View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16674_low_4 (Length: 266)
Name: NF16674_low_4
Description: NF16674
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16674_low_4 |
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Alignment Details
Target: chr4 (Bit Score: 207; Significance: 1e-113; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 207; E-Value: 1e-113
Query Start/End: Original strand, 14 - 248
Target Start/End: Original strand, 55714125 - 55714359
Alignment:
| Q |
14 |
agatgaatatccagtcgcatagaatactcctctttgtggtaggacatgtggtcgtgtcacaaggcctttctagtttaattagaagagcttatagtatata |
113 |
Q |
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| T |
55714125 |
agatgaatatccagtcgcatagaatgctcctctttgtggtagggcacgtggtcgtgtcacaaggcctttctagtttaattagaatagcttatagtatata |
55714224 |
T |
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| Q |
114 |
taacataatgtcacaagagggtggcatgatgtttatatctacatatctatacctatatgatatgatgagaattgtcttcttctattgagtgaacatacac |
213 |
Q |
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| T |
55714225 |
taacataatgtcacaagagggtggcataatgtttatatctacatatctatacctatatgatatgatgagaattgtcttcttctattgagtgaacatacac |
55714324 |
T |
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| Q |
214 |
atgcggggaatttattattcaaagctagctccttt |
248 |
Q |
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| T |
55714325 |
acgcggggaatttattattcaaagctaactccttt |
55714359 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 77; E-Value: 8e-36
Query Start/End: Original strand, 13 - 154
Target Start/End: Original strand, 55297409 - 55297554
Alignment:
| Q |
13 |
gagatgaatatccagtcgcatagaatactcctctttgtggtaggacatgtggtcgtgtcacaaggcctttctagtttaattagaagagcttatag----t |
108 |
Q |
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| T |
55297409 |
gagatgaatatccagtcccaaagaatgctcttctttgtggcagggcaagtggtcgtgtcacaaggcctttctagtttaattaggatagtttatagtatat |
55297508 |
T |
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| Q |
109 |
atatataacataatgtcacaagagggtggcatgatgtttatatcta |
154 |
Q |
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| T |
55297509 |
atatataacatgatgtcacgagagggtggcataatgtttatatcta |
55297554 |
T |
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