View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF16674_low_5 (Length: 259)
Name: NF16674_low_5
Description: NF16674
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16674_low_5 |
 | |
|
| [»] chr6 (1 HSPs) |
| |
|
Alignment Details
Target: chr6 (Bit Score: 228; Significance: 1e-126; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 228; E-Value: 1e-126
Query Start/End: Original strand, 1 - 259
Target Start/End: Complemental strand, 17990158 - 17989903
Alignment:
| Q |
1 |
ttaaacctatgaagcacatagatagacacgaccctgacacatcaacactagtagattgtccaattagattccagcataaagtcctgaaaagtagaatgaa |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
17990158 |
ttaaacctatgaagcacatagatagacacgaccctgacacatcaacactagtagattgtccaattagattccagcataaagtcctgaaaagtagaatgaa |
17990059 |
T |
|
| Q |
101 |
tacaatgttagagagatcccttatataaataacatgacctaaaagtaacatctttctttcgctcctaacttgaaaggatatgacaaagttctaaattttt |
200 |
Q |
| |
|
||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |||| |
|
|
| T |
17990058 |
taccatgttagagagatcccttatataaataacatgacctaaaagtaacatctttctttcgctcctaacttgaaaggatatgac-aagttctaaaatttt |
17989960 |
T |
|
| Q |
201 |
catcaatacccttcagaagcatatatgtgttttaaaagtaacataatttcgtctcttct |
259 |
Q |
| |
|
|||||||||||||||||||| ||||||||||||||||||||||||||| ||||||||| |
|
|
| T |
17989959 |
catcaatacccttcagaagc--atatgtgttttaaaagtaacataattttgtctcttct |
17989903 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University