View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16675_high_1 (Length: 647)
Name: NF16675_high_1
Description: NF16675
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16675_high_1 |
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Alignment Details
Target: chr4 (Bit Score: 556; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 556; E-Value: 0
Query Start/End: Original strand, 10 - 631
Target Start/End: Original strand, 33886075 - 33886693
Alignment:
| Q |
10 |
catcatcacttgggatcaagaggatattccaaattagcctaaagttgagaaaaaggtaaaattctattccatacataaataaataaagataattgaagct |
109 |
Q |
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| T |
33886075 |
catcataacttgggatcaagaggatattccaaattagcctaaagttgagaaaaaggtaaaattctattccatacataaataaataaagataattgaagct |
33886174 |
T |
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| Q |
110 |
gcggaaagccaaaaaggaaacgtgcactaaaaaggaagttacaacaaaagatacttttcatataaaattactactactactaaactagtaccaaatagca |
209 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
33886175 |
gcggaaagccaaaaaggaaacgtgcactaaaaaggaagttacaacaaaagatacttttcatataaaattactactactactaaactagtaccaaatagca |
33886274 |
T |
|
| Q |
210 |
attgaagttgtatcaatataagttccaatgataatgaataatgtaaatagatcagatcactctaacaaagaacctatctatattagatgattaattgcct |
309 |
Q |
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||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| ||| |
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| T |
33886275 |
attgaagttgtatcaatataatttccaatgataatgaataatgtaaatagatcagatcactctaacaaagaacctatc-----tagatgattaattccct |
33886369 |
T |
|
| Q |
310 |
tatt-attgtacaggaaacaagcactgaaatagacacaatgccactgtaataattgattaacctgaagaaaataacaagattctaaacttgtacaattgt |
408 |
Q |
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|||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
33886370 |
tattaattgtacaggaaacaagcactgaaatagacacaatgccactgtaataattgattaacctgaagaaaataacaagattctaaacttgtacaattgt |
33886469 |
T |
|
| Q |
409 |
atctatgagaaagctcagctgagatttgttgcagaaaaactagctttgttgtatccgacataa-agagaaattaagcagttatactatataattatatct |
507 |
Q |
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||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |||||| |||||||||||||||||||||||||||||||||||| |
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| T |
33886470 |
atctatgagaaagctcagctgagatttgttgcaaaaaaactagctttgttgtatcccacataatagagaaattaagcagttatactatataattatatct |
33886569 |
T |
|
| Q |
508 |
gtacaaaatttttaaccatcaacagcatcaccatctctccatgttgcacggtcaatttcttttaaccttgtgtcaggttagtttacttatgcggtcacct |
607 |
Q |
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|||||||| |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
33886570 |
gtacaaaaattttaaccgtcaacagcatcaccatctctccatgttgcacggtcaatttcttttaaccttgtgtcaggttagtttacttatgcggtcacct |
33886669 |
T |
|
| Q |
608 |
tgtctagtgggcaccactgctgct |
631 |
Q |
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|||||||||||||||||| ||||| |
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| T |
33886670 |
tgtctagtgggcaccactactgct |
33886693 |
T |
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