View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16675_high_10 (Length: 347)
Name: NF16675_high_10
Description: NF16675
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16675_high_10 |
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Alignment Details
Target: chr2 (Bit Score: 300; Significance: 1e-169; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 300; E-Value: 1e-169
Query Start/End: Original strand, 11 - 314
Target Start/End: Complemental strand, 43070732 - 43070429
Alignment:
| Q |
11 |
caaaggttttgcgaatactagagggtgacacggtcatggaatcgccacgccattatggtggttctccttccctttgaagctaagaactaaactacagaca |
110 |
Q |
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| T |
43070732 |
caaaggttttgcgaatactagagggtgacacggtcatggaatcgccacgccattatggtggttctccttccctttgaagctaagaactaaactacagaca |
43070633 |
T |
|
| Q |
111 |
tgcctattggaaaagtggttcactgtgaaaactgcattcttaccctacgtttggattttatagttttatttctatatttctgcaatgatataattttgta |
210 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
43070632 |
tgcctattggaaaagtggttcactgtgaaaactgcattcttaccctacgtttggattttatagttttatttctatatttctgcaatgatataattttgta |
43070533 |
T |
|
| Q |
211 |
tttgtatagtagagggaacgtaggattaacaaagtaatgaatatatagaatagaagctaaacccttgaaattcttttaagcaattttgtaaacatgtgcc |
310 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |
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| T |
43070532 |
tttgtatagtagagggaacgtaggattaacaaagtaatgaatatatagaatagaagctaaacccttgaaattcttttaagaaattttgtaaacatgtgcc |
43070433 |
T |
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| Q |
311 |
tgta |
314 |
Q |
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|||| |
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| T |
43070432 |
tgta |
43070429 |
T |
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