View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF16675_high_12 (Length: 317)

Name: NF16675_high_12
Description: NF16675
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF16675_high_12
NF16675_high_12
[»] chr4 (1 HSPs)
chr4 (19-307)||(28622061-28622352)


Alignment Details
Target: chr4 (Bit Score: 228; Significance: 1e-126; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 228; E-Value: 1e-126
Query Start/End: Original strand, 19 - 307
Target Start/End: Complemental strand, 28622352 - 28622061
Alignment:
Q  19 aaactagctatgaggaagcaagatgaaatgaaatttagaagcttataagctttgaatatgacaatgttagctatgcaagagtggaagcttttaactaatc 118  Q
    |||||||||| |||||||||||||| |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||    
T  28622352 aaactagctacgaggaagcaagatggaatgaaatttagaagcttataagctttgaatatggcaatgttagctatgcaagagtggaagcttttaactaatc 28622253  T
Q  119 caaaggatcttattaattacttgtttattcaaagttaaatattttcccaatgatgg--nnnnnnngcgccatactaagcataatcacaaccatgtttgca 216  Q
    |||||||||||||||||||||||||||||||||| ||||||| |||||||||||||         |||||||||||||||||||||||||||||||||||    
T  28622252 caaaggatcttattaattacttgtttattcaaagctaaatatgttcccaatgatggtttttttttgcgccatactaagcataatcacaaccatgtttgca 28622153  T
Q  217 aaagtgttgagtattaacacgggtgcaac-tatacctgtatggaaacgaaattggtttctgatggtactaacctcaaacctctttgatgatg 307  Q
    ||||||||||||||||||||||||||||| |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||    
T  28622152 aaagtgttgagtattaacacgggtgcaacgtatacctgtatggaaaggaaattggtttctgatggtactaacctcaaacctctttgatgatg 28622061  T

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