View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16675_high_5 (Length: 572)
Name: NF16675_high_5
Description: NF16675
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16675_high_5 |
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Alignment Details
Target: chr5 (Bit Score: 503; Significance: 0; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 503; E-Value: 0
Query Start/End: Original strand, 1 - 556
Target Start/End: Original strand, 30266909 - 30267472
Alignment:
| Q |
1 |
ctgattctgattaccttaaataccgttggaaaccactcaattgtgagctcccaaggtataaaaaataataaaagcatatgtagcattaacacgtctgatc |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
30266909 |
ctgattctgattaccttaaataccgttggaaaccactcaattgtgagctcccaaggtataaaaaataataaaagcatatgtagcattaacacgtctgatc |
30267008 |
T |
|
| Q |
101 |
aaagatgtgtctggtgtctgacacgtgattatgttcaataattcattttctcaagtgtcaatgtcgtgtctggtgttcgtgtttgggtttgtgcttcata |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
30267009 |
aaagatgtgtctggtgtctgacacgtgattatgttcaataattcattttctcaagtgtcaatgtcgtgtctggtgttcgtgtttgggtttgtgcttcata |
30267108 |
T |
|
| Q |
201 |
gcaaaatattgtgtttttaagataatgtagtgtgtggttgcttagtataatttgaatgatggt-----------gttttgtaatggtaggttcaatggag |
289 |
Q |
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| T |
30267109 |
gcaaaatatagtgtttttaagata---tagtgtgtggttgcttagtataatttgaatgatggtgtttttgtggtgttttgtaatggcaggttcaatggag |
30267205 |
T |
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| Q |
290 |
ttgagtttttgttgaagatgaaaggaaaaagtgtgatgtttgttggtgattcgttgggaaggaaccaatggcagtctttgatttgtatgatatctgctgc |
389 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |
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| T |
30267206 |
ttgagtttttgttgaagatgaaaggaaaaagtgtgatgtttgttggtgattcgttaggaaggaaccaatggcagtctttgatttgtatgatatctgctgc |
30267305 |
T |
|
| Q |
390 |
agcacctaatgtggagacacaattggttaggggagatcctctctccactttcacattcttggtgagtctagaaaaaatttctgagctttaagttgattgc |
489 |
Q |
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| T |
30267306 |
agcacctaatgtggagacacaattggttaggggagatcctctctccactttcacattcttggtgagtctagaaaaaatttctgagctttaagttgattgc |
30267405 |
T |
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| Q |
490 |
taacaaaaagttttaaattgtggctgtgatcattgatatattcggaagaattgcggtcaaatgtatc |
556 |
Q |
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| T |
30267406 |
taacaaaaagttttaaattgtggctgtgatcattgatatattcggaagaattgcggtcaaatgtatc |
30267472 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 231; E-Value: 1e-127
Query Start/End: Original strand, 275 - 561
Target Start/End: Complemental strand, 29365395 - 29365109
Alignment:
| Q |
275 |
gtaggttcaatggagttgagtttttgttgaagatgaaaggaaaaagtgtgatgtttgttggtgattcgttgggaaggaaccaatggcagtctttgatttg |
374 |
Q |
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| T |
29365395 |
gtaggttcaacggagttgagtttctgatgaagatgaaaggaaaaaatgtgatgtttgttggtgattcgttaggaaggaaccaatggcagtctttgattta |
29365296 |
T |
|
| Q |
375 |
tatgatatctgctgcagcacctaatgtggagacacaattggttaggggagatcctctctccactttcacattcttggtgagtctagaaaaaatttctgag |
474 |
Q |
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|||||||||||||||||||||| |||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| ||||| |
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| T |
29365295 |
tatgatatctgctgcagcacctcgtgtggagacagaattggttaggggagatcctctctccactttcacattcttggtgagtatagaaaaaattcctgag |
29365196 |
T |
|
| Q |
475 |
ctttaagttgattgctaacaaaaagttttaaattgtggctgtgatcattgatatattcggaagaattgcggtcaaatgtatctgatg |
561 |
Q |
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| T |
29365195 |
ctttaagtagattgctaacaaaaagttttaaattgtggctttgatcattgatatatttggaagaattgcggtcaaatgtatctgatg |
29365109 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 47; Significance: 1e-17; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 276 - 382
Target Start/End: Original strand, 25959220 - 25959326
Alignment:
| Q |
276 |
taggttcaatggagttgagtttttgttgaagatgaaaggaaaaagtgtgatgtttgttggtgattcgttgggaaggaaccaatggcagtctttgatttgt |
375 |
Q |
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|||||||||||||||| ||||| || || ||||| ||||||||| | ||||||||||||||||| ||||| ||||| |||||| | || ||||||||| |
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| T |
25959220 |
taggttcaatggagttcagtttctgatgggaatgaagggaaaaagtataatgtttgttggtgattctttggggaggaatcaatgggaatcattgatttgt |
25959319 |
T |
|
| Q |
376 |
atgatat |
382 |
Q |
| |
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||||||| |
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| T |
25959320 |
atgatat |
25959326 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 29; Significance: 0.0000008; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 94 - 122
Target Start/End: Original strand, 5660319 - 5660347
Alignment:
| Q |
94 |
tctgatcaaagatgtgtctggtgtctgac |
122 |
Q |
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| T |
5660319 |
tctgatcaaagatgtgtctggtgtctgac |
5660347 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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