View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF16675_high_7 (Length: 465)
Name: NF16675_high_7
Description: NF16675
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16675_high_7 |
 | |
|
Alignment Details
Target: chr1 (Bit Score: 418; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 418; E-Value: 0
Query Start/End: Original strand, 14 - 455
Target Start/End: Complemental strand, 35297163 - 35296722
Alignment:
| Q |
14 |
cattcttatcattcctctcttcttgcattctttcattcattcaatgaatgcctacaaattgaaaagacagaaatcactttgcatcaatctttgtgcctca |
113 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
35297163 |
cattcttatcattcctctcttcttgcattctttcattcattcaatgaatgcctacaaattgaaaagacagaaatcactttgcatcaatctttgtgcctca |
35297064 |
T |
|
| Q |
114 |
cttttagttcattcatatgtataaatgaaggatggatgcacatttgttggctcatattgaaatttctgtacgagtactgaaaacgtgaattaaatggtat |
213 |
Q |
| |
|
||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |
|
|
| T |
35297063 |
cttttagttaattcatatgtataaatgaaggatggatgcacatttgttggctcatattgaaatttctgtacgagtactgaaaacgtgaattaaatgttat |
35296964 |
T |
|
| Q |
214 |
tcaaattttctaaactttaagtcattcaaggctatgtgtcttcggtgatatcattccaaactacttgtaaatacaacagtggtcacaatgaagccttttt |
313 |
Q |
| |
|
|||||||||||||||||||||||||||||||| |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
35296963 |
tcaaattttctaaactttaagtcattcaaggccatgtgtcttcggtgatgtcattccaaactacttgtaaatacaacagtggtcacaatgaagccttttt |
35296864 |
T |
|
| Q |
314 |
acctttttaagaagaatgtttaagtgtcagaaacaagttacaatactgctagctactacagattatattttactattttagttttgtaccgattaattat |
413 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
35296863 |
acctttttaagaagaatgtttaagtgtcagaaacaagttacaatactgctagctactacagattatattttactattttagttttgtaccgattaattat |
35296764 |
T |
|
| Q |
414 |
agtttggtactactattcttagtgtaaataccacaggttctg |
455 |
Q |
| |
|
||||||||||||||||||||||||||||||||| ||||||| |
|
|
| T |
35296763 |
agtttggtactactattcttagtgtaaataccattggttctg |
35296722 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University