View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16675_high_8 (Length: 439)
Name: NF16675_high_8
Description: NF16675
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16675_high_8 |
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Alignment Details
Target: chr5 (Bit Score: 243; Significance: 1e-134; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 243; E-Value: 1e-134
Query Start/End: Original strand, 19 - 297
Target Start/End: Complemental strand, 36841461 - 36841185
Alignment:
| Q |
19 |
atagatctccaaaatatttatttttgtagaccccaatttaattataatgcaggaactaccaaaacactcccacattaagtgacaataatgataatcacca |
118 |
Q |
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| T |
36841461 |
atagatctccaaaatatttatttttgtagaccccaatttaattataatgcaggaactaccaaaacactcccacattaagtgacaataatgataa--acca |
36841364 |
T |
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| Q |
119 |
cactgaaatggccatttatgaagtcaaaataatgaaagcaaaaatataatatagcatatgaaatttgaaatattctctgctgacaaaacaatgctttttc |
218 |
Q |
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| T |
36841363 |
cgctgaaatggccatttatgaagtcaaaataatgaaagcaaaaatataatatagcatatgaaatttgaaatattctctgctgacaaaacaatgctttttc |
36841264 |
T |
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| Q |
219 |
aagctttcttgaatttctcttagcctcaagnnnnnnntcaagactaatctacactcattgctcatgaatagggagcagc |
297 |
Q |
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| T |
36841263 |
aagctttcttgaatttctcttagcctcaagaaaaaaatcaagactaatctacactcattgctcatgaatagggagcagc |
36841185 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 99; E-Value: 1e-48
Query Start/End: Original strand, 331 - 429
Target Start/End: Complemental strand, 36841151 - 36841053
Alignment:
| Q |
331 |
tagtttgaagagacagatacatcttaatactatatactacttgatgaattttcttatcttatttctaaaaaatgggagaagaatatttttactcctttg |
429 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
36841151 |
tagtttgaagagacagatacatcttaatactatatactacttgatgaattttcttatcttatttctaaaaaatgggagaagaatatttttactcctttg |
36841053 |
T |
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