View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16675_low_10 (Length: 367)
Name: NF16675_low_10
Description: NF16675
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16675_low_10 |
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Alignment Details
Target: chr7 (Bit Score: 286; Significance: 1e-160; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 286; E-Value: 1e-160
Query Start/End: Original strand, 16 - 341
Target Start/End: Original strand, 36886952 - 36887277
Alignment:
| Q |
16 |
atgagaagaacagttgccttacatatgtgtgacattggggggtaaaccaaacggtatttcgcccactatgttattagaactgacatacctacaaaaacca |
115 |
Q |
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| T |
36886952 |
atgagaagaacagttgccttacatatgtgtgacattggggggtaaaccaaacggcatttcgcccactatgttattagaactgacatccctacaaaaacca |
36887051 |
T |
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| Q |
116 |
aaaacatggaaacaggtcaattaatagcataacttgaaattcacatatcctaatataagaatctaatactaatgccttgcaaattcaaaaacactcacag |
215 |
Q |
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| T |
36887052 |
aaaatatggaaacaagttaattaatagcataacttgaaattcacatatcctgatataagaatctaatactaatgccttgcaaaatcaaaaacactcacag |
36887151 |
T |
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| Q |
216 |
ctgtttcaaatttcggagattataaagcctgcatagactcccagtgaggtctaacccttgaatgtttctgcattttgacatagaacacggataacaatta |
315 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |
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| T |
36887152 |
ctgtttcaaatttcggagattataaagcctgcatagactcccagtgaggtctaacccttgaatgtttctgcattttgacatagaacacggataccaatta |
36887251 |
T |
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| Q |
316 |
tcaatatcattatgatcttagagtct |
341 |
Q |
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||||||||||| ||||||||| |||| |
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| T |
36887252 |
tcaatatcattctgatcttagggtct |
36887277 |
T |
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Target: chr1 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 23 - 101
Target Start/End: Original strand, 22557140 - 22557218
Alignment:
| Q |
23 |
gaacagttgccttacatatgtgtgacattggggggtaaaccaaacggtatttcgcccactatgttattagaactgacat |
101 |
Q |
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||||||| | |||||||||||||| ||||||||||||| ||| | || ||||| |||| |||| | || |||||||||| |
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| T |
22557140 |
gaacagtaggcttacatatgtgtggcattggggggtaatccatatggaatttcacccattatgctgttggaactgacat |
22557218 |
T |
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