View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16675_low_12 (Length: 342)
Name: NF16675_low_12
Description: NF16675
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16675_low_12 |
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Alignment Details
Target: chr7 (Bit Score: 297; Significance: 1e-167; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 297; E-Value: 1e-167
Query Start/End: Original strand, 1 - 325
Target Start/End: Complemental strand, 22956435 - 22956111
Alignment:
| Q |
1 |
gattcgaaattgtttttgaatcaagtatgaagtcgacattatcaacgtgagaatgatgacaacgagcaactatcttatggacatttctctattaaattat |
100 |
Q |
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||||||||||||||||||||||||| |||||||||||||||||||| |||||||||||||||||||||||||||||| ||||||||||||||||||| || |
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| T |
22956435 |
gattcgaaattgtttttgaatcaagcatgaagtcgacattatcaacatgagaatgatgacaacgagcaactatcttaaggacatttctctattaaatgat |
22956336 |
T |
|
| Q |
101 |
gaactcgctctaccacttgtgtgcatagctcattaacatcttgccatgatttaaggttcatgtgcttccaaatactcaaaaacagggagagattcaacta |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |
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| T |
22956335 |
gaactcgctctaccacttgtgtgcatagctcattaacatcttgccatgatttaaggttcatgtgcttccaaatactcaaaaacagggagagattcagcta |
22956236 |
T |
|
| Q |
201 |
acacaacgtgtagggaattgcacaccattaccaaaaatagcacaatctttgttgccgcttaaaacctactgaaccaaatcatggttccaattcttacatg |
300 |
Q |
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|
||||||| |||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
22956235 |
acacaacttgtagggaattgcacaccattaccgaaaatagcacaatctttgttgccgcttaaaacctactgaaccaaatcatggttccaattcttacatg |
22956136 |
T |
|
| Q |
301 |
aagtatcaatcaggctattcacata |
325 |
Q |
| |
|
||||||||||||||||||||||||| |
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| T |
22956135 |
aagtatcaatcaggctattcacata |
22956111 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 44; Significance: 5e-16; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 111 - 182
Target Start/End: Original strand, 6979788 - 6979859
Alignment:
| Q |
111 |
taccacttgtgtgcatagctcattaacatcttgccatgatttaaggttcatgtgcttccaaatactcaaaaa |
182 |
Q |
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||||||||||| |||||||||| ||||||||| |||| ||||||| ||||||| ||||||||||||| |||| |
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| T |
6979788 |
taccacttgtgcgcatagctcactaacatcttcccataatttaagattcatgttcttccaaatactccaaaa |
6979859 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 32; Significance: 0.000000008; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 108 - 155
Target Start/End: Complemental strand, 33168922 - 33168875
Alignment:
| Q |
108 |
ctctaccacttgtgtgcatagctcattaacatcttgccatgatttaag |
155 |
Q |
| |
|
|||||||||||| | |||||||||||||||||| ||||||| |||||| |
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| T |
33168922 |
ctctaccacttgcgcgcatagctcattaacatcgtgccatggtttaag |
33168875 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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