View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF16675_low_13 (Length: 335)

Name: NF16675_low_13
Description: NF16675
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF16675_low_13
NF16675_low_13
[»] chr4 (3 HSPs)
chr4 (1-318)||(29422375-29422693)
chr4 (14-105)||(29458303-29458394)
chr4 (223-318)||(29458583-29458677)
[»] chr6 (2 HSPs)
chr6 (223-273)||(6346930-6346980)
chr6 (224-273)||(6331668-6331717)
[»] chr5 (2 HSPs)
chr5 (223-273)||(30655248-30655298)
chr5 (223-267)||(14416665-14416709)
[»] chr2 (2 HSPs)
chr2 (224-274)||(7732224-7732274)
chr2 (224-272)||(32265917-32265965)
[»] chr3 (1 HSPs)
chr3 (224-272)||(24993328-24993376)


Alignment Details
Target: chr4 (Bit Score: 215; Significance: 1e-118; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 215; E-Value: 1e-118
Query Start/End: Original strand, 1 - 318
Target Start/End: Original strand, 29422375 - 29422693
Alignment:
Q  1 attagtgagaggaatattcaatttttattgctgtttatcccaatagaattagctaaaattgttttatagagattggttgcgaattagctactaaatagta 100  Q
    |||||||| |||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |||||||||||||||| |||    
T  29422375 attagtgaaaggaatattcaatttttattgctgtttatcccaatagaattaactaaaattgttttatagagattggttgtgaattagctactaaatggta 29422474  T
Q  101 acactctttgaatgttactaataata--ctcaggggttactgaaactactcagtaacacaggtgacaggctttacctaacaaatgataaatgttactaga 198  Q
    ||||||||||||||||||||||||||  |||||||||||||||||||||||||||||||||  ||||||||||||||||||||||| |||||||||||||    
T  29422475 acactctttgaatgttactaataatactctcaggggttactgaaactactcagtaacacagtcgacaggctttacctaacaaatgacaaatgttactaga 29422574  T
Q  199 tctaaaaggtaacannnnnnnnnngatttagtaacacttttaaaatgttactaaatctcatatatgttgcagtgttccattaatatcgaatgttcttctc 298  Q
    ||||||| ||||||           ||||||||||||||||||||||||||| ||||||||||||| ||||| |||||||||| || ||||||||||| |    
T  29422575 tctaaaaagtaacatttttttttt-atttagtaacacttttaaaatgttactgaatctcatatatgctgcagagttccattaaaattgaatgttcttccc 29422673  T
Q  299 atttgtcatgactttgctga 318  Q
    ||||||||||||||||||||    
T  29422674 atttgtcatgactttgctga 29422693  T

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Target: chr4; HSP #2
Raw Score: 52; E-Value: 9e-21
Query Start/End: Original strand, 14 - 105
Target Start/End: Original strand, 29458303 - 29458394
Alignment:
Q  14 atattcaatttttattgctgtttatcccaatagaattagctaaaattgttttatagagattggttgcgaattagctactaaatagtaacact 105  Q
    ||||||||| ||| ||| |||||||||||| | ||||||||||||||||||| |||||| |||||||||||||| |||||||  ||||||||    
T  29458303 atattcaatctttgttgttgtttatcccaacaaaattagctaaaattgttttctagagaatggttgcgaattagttactaaacggtaacact 29458394  T

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Target: chr4; HSP #3
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 223 - 318
Target Start/End: Original strand, 29458583 - 29458677
Alignment:
Q  223 gatttagtaacacttttaaaatgttactaaatctcatatatgttgcagtgttccattaatatcgaatgttcttctcatttgtcatgactttgctga 318  Q
    |||||||||| |||| | ||||| || ||||||||||| |||||| || ||||||||||||||  |||||||| |||||||| |||||||| ||||    
T  29458583 gatttagtaagacttctcaaatgcta-taaatctcatagatgttgtagggttccattaatatctgatgttcttttcatttgttatgacttttctga 29458677  T

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Target: chr6 (Bit Score: 35; Significance: 0.0000000001; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 223 - 273
Target Start/End: Original strand, 6346930 - 6346980
Alignment:
Q  223 gatttagtaacacttttaaaatgttactaaatctcatatatgttgcagtgt 273  Q
    |||||||| ||| ||||||  ||||||||||||||||||||||||||||||    
T  6346930 gatttagttacaattttaatgtgttactaaatctcatatatgttgcagtgt 6346980  T

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Target: chr6; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 224 - 273
Target Start/End: Original strand, 6331668 - 6331717
Alignment:
Q  224 atttagtaacacttttaaaatgttactaaatctcatatatgttgcagtgt 273  Q
    ||||||| |||  |||||| |||||||||||||||||||||||| |||||    
T  6331668 atttagttacaactttaaagtgttactaaatctcatatatgttgtagtgt 6331717  T

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Target: chr5 (Bit Score: 31; Significance: 0.00000003; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 223 - 273
Target Start/End: Original strand, 30655248 - 30655298
Alignment:
Q  223 gatttagtaacacttttaaaatgttactaaatctcatatatgttgcagtgt 273  Q
    |||||||| ||| |||| || |||||||||||||||||||||||| |||||    
T  30655248 gatttagttacaattttgaagtgttactaaatctcatatatgttgtagtgt 30655298  T

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Target: chr5; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 223 - 267
Target Start/End: Complemental strand, 14416709 - 14416665
Alignment:
Q  223 gatttagtaacacttttaaaatgttactaaatctcatatatgttg 267  Q
    |||||||| |||  |||||| ||||||||||||||||||||||||    
T  14416709 gatttagttacaaatttaaagtgttactaaatctcatatatgttg 14416665  T

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Target: chr2 (Bit Score: 31; Significance: 0.00000003; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 224 - 274
Target Start/End: Complemental strand, 7732274 - 7732224
Alignment:
Q  224 atttagtaacacttttaaaatgttactaaatctcatatatgttgcagtgtt 274  Q
    ||||| ||||| |||| || |||||||||||||||||||||||| ||||||    
T  7732274 atttactaacatttttcaagtgttactaaatctcatatatgttgtagtgtt 7732224  T

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Target: chr2; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 224 - 272
Target Start/End: Complemental strand, 32265965 - 32265917
Alignment:
Q  224 atttagtaacacttttaaaatgttactaaatctcatatatgttgcagtg 272  Q
    ||||||| ||| |||| || |||||||||||||||||||||||| ||||    
T  32265965 atttagttacaattttgaactgttactaaatctcatatatgttgtagtg 32265917  T

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Target: chr3 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 224 - 272
Target Start/End: Complemental strand, 24993376 - 24993328
Alignment:
Q  224 atttagtaacacttttaaaatgttactaaatctcatatatgttgcagtg 272  Q
    ||||||| ||| |||| || |||||||||||||||||||||||| ||||    
T  24993376 atttagttacaattttgaagtgttactaaatctcatatatgttgtagtg 24993328  T

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