View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16675_low_18 (Length: 253)
Name: NF16675_low_18
Description: NF16675
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16675_low_18 |
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| [»] chr1 (1 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 197; Significance: 1e-107; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 197; E-Value: 1e-107
Query Start/End: Original strand, 13 - 253
Target Start/End: Original strand, 35296377 - 35296617
Alignment:
| Q |
13 |
gagaagaaaatggttgtgcagatttacttgcgtctcatgggcattcgacatcattctctttaactgttattgatagtttcttccctttattagatgctat |
112 |
Q |
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| T |
35296377 |
gagaagaaaatggttgtgcatatttacttgcgtctcatgggcattcgacatcattctctttaactgttattgatagttccttccctttattagatgctat |
35296476 |
T |
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| Q |
113 |
tatgttaaatactctgataactgtgttatggatgttgcaactatatattgtaatccaatatttatttgatgccatgttttggtttaaaactctcaactat |
212 |
Q |
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|||||||||||||||||||||||||||||||||||| ||||||||||||||||| ||||||||||||| |||||||||||||| |||||| |||| |||| |
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| T |
35296477 |
tatgttaaatactctgataactgtgttatggatgttacaactatatattgtaatgcaatatttatttggtgccatgttttggtctaaaaccctcagctat |
35296576 |
T |
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| Q |
213 |
gaaggataggtactcgacttttgatggacgtcaatacttct |
253 |
Q |
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| T |
35296577 |
gaaggataggtacttgacttttgatggacgacaataattct |
35296617 |
T |
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