View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16675_low_2 (Length: 600)
Name: NF16675_low_2
Description: NF16675
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16675_low_2 |
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Alignment Details
Target: chr1 (Bit Score: 547; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 547; E-Value: 0
Query Start/End: Original strand, 1 - 586
Target Start/End: Original strand, 34362218 - 34362804
Alignment:
| Q |
1 |
atgatttaatattataaacacacatgcatgtgaagatggattgatgtatatatgtcaaataatattctttatacacacaaatgatttagaagtatactgc |
100 |
Q |
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| T |
34362218 |
atgatttaatattataaacacacatgcatgtgaagatggattgatgtatatttgccaaataatattctttatacacacaaatgatttagaagtatactgc |
34362317 |
T |
|
| Q |
101 |
tgccgcccagcactcttctttgtatggtagcaaatgctttgcaagttagaatttagatgtagtggtgagtgagaccactacctacatgctacatataata |
200 |
Q |
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| T |
34362318 |
tgccgcccagcactcttctttgtatggtagcaaatgctttgcaagttagaatttagatgtagtggtgagtgagaccactacctacatgctacatataata |
34362417 |
T |
|
| Q |
201 |
taagcgtgtatacagcacttgcaaaatcaaggttgtagaaaatttatggctcatgcttggtatcctatataactttttcattaagttagttttgtcccac |
300 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |||||||||||||||||| |
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| T |
34362418 |
taagcgtgtatacagcacttgcaaaatcaaggttgtagaaaatttatggctcatgcttagtatcctatataactttttcatcaagttagttttgtcccac |
34362517 |
T |
|
| Q |
301 |
ttccacataaagatatataggacagcactcaaataataatgttgtatactaactttactttaatttgtctctcaaaagtcttaagtggcaacaagctagc |
400 |
Q |
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|||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |
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| T |
34362518 |
ttccacataaaggtatataggacagcactcaaataataatgttgtatactaactttactttaatttgtctctcaaaagtcttaagtggcaaccagctagc |
34362617 |
T |
|
| Q |
401 |
tcatcaagcacttcaccatgcccgagttgaaccttctcactcaatttttgacttccattagacacaaattcaca-ttttaacctattgcattagagtaca |
499 |
Q |
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||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |
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| T |
34362618 |
tcatcaagcacttcaccatgcccgagttgaaccttctcacttaatttttgacttccattagacacaaattcacatttttaacctattgcattagagtacc |
34362717 |
T |
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| Q |
500 |
atgcctaagttgaaccaaaattaaacataagattttggagttaattaagttctgaaagttcaatgtataaggtactgatttgtttgt |
586 |
Q |
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| T |
34362718 |
atgcctaagttgaaccaaaattaaacataagattttggagttaattaagttctgaaagttcaatgtataaggtactgatttgtttgt |
34362804 |
T |
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