View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16675_low_3 (Length: 593)
Name: NF16675_low_3
Description: NF16675
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16675_low_3 |
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Alignment Details
Target: chr1 (Bit Score: 417; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 417; E-Value: 0
Query Start/End: Original strand, 15 - 576
Target Start/End: Original strand, 36951434 - 36952002
Alignment:
| Q |
15 |
caaaggtgacaacaacatacatctaccatgttgaataaactctacaatcaataaataattaacatgattaagctaattctagtatgcaataaacaacnnn |
114 |
Q |
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||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| ||||||||||||||||||||||||||| |||||||||| |
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| T |
36951434 |
caaaggtgacaacaacatacatctaccatgttgaataaactatacaatcaataaataaataacatgattaagctaattctagtatgtaataaacaacata |
36951533 |
T |
|
| Q |
115 |
nnnnnncttaccaaaaggaaacaaagtgacagcaacatacatctaccaataccatgctgaataatccatactcaaataattttctagctagaacaggtac |
214 |
Q |
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| T |
36951534 |
aaaaaacttaccaaaaggaaacaaagtgacagcaacatacatctaccaataccatgctgaataatccatactcaaataattttctagctagaacaggtac |
36951633 |
T |
|
| Q |
215 |
tcaaaactttttatcatttttagaagnnnnnnnnttctttcaaattataannnnnnnnaagaaagttgtgacaaacgtgctctaattctaatnnnnnnnn |
314 |
Q |
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|||||||||||||||||||||||||| |||||||||||||||| |||||||||||||||||||||||||||||||||| |
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| T |
36951634 |
tcaaaactttttatcatttttagaagaaaaaaaattctttcaaattataattttttttaagaaagttgtgacaaacgtgctctaattctaataaaaaaa- |
36951732 |
T |
|
| Q |
315 |
ttgttacccagtgaaagaaccgcatagaaacgcgctttcacctccatgaggccaaacaaacaagtgaggaatggaaaaaggttgaggataaggtactggt |
414 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |
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| T |
36951733 |
ttgttacccagtgaaagaaccgcatagaaacgcgctttcacctccatgaggccaaacaaacaagtgaggaatggaaaaaggttgaggatcaggtactggt |
36951832 |
T |
|
| Q |
415 |
acatcactactacttccatttcctcctctacctgcagctaatgaaccagacatttcaatctcaaatcaca--------aacaattgaagcaacctttgat |
506 |
Q |
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|||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |
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| T |
36951833 |
acatcactgctacttccatttcctcctctacctgcagctaatgaaccagacatttcaatctcaaatcacaaacaactgaacaattgaagcaacctttgat |
36951932 |
T |
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| Q |
507 |
tactaggtagtagcaagaatttaaatgctttgtaaaataatgtagcaaatagtgtgacaaagttcatatt |
576 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
36951933 |
tactaggtagtagcaagaatttaaatgctttgtaaaataatgtagcaaatagtgtgacaaagttcatatt |
36952002 |
T |
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