View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF16675_low_4 (Length: 578)

Name: NF16675_low_4
Description: NF16675
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF16675_low_4
NF16675_low_4
[»] chr7 (5 HSPs)
chr7 (189-492)||(11830828-11831132)
chr7 (1-193)||(11831254-11831447)
chr7 (500-562)||(11829608-11829670)
chr7 (1-46)||(37742493-37742538)
chr7 (1-29)||(41020483-41020511)
[»] chr3 (7 HSPs)
chr3 (429-559)||(24680458-24680587)
chr3 (1-36)||(14216872-14216907)
chr3 (1-36)||(14223001-14223036)
chr3 (1-36)||(10335330-10335365)
chr3 (1-48)||(22774114-22774161)
chr3 (1-38)||(3865600-3865637)
chr3 (1-48)||(28812483-28812530)
[»] chr8 (4 HSPs)
chr8 (1-48)||(36450798-36450845)
chr8 (1-43)||(22204612-22204654)
chr8 (1-33)||(15816173-15816205)
chr8 (1-33)||(41838167-41838199)
[»] chr5 (3 HSPs)
chr5 (1-48)||(14674237-14674284)
chr5 (1-48)||(43001768-43001815)
chr5 (12-48)||(7175074-7175110)
[»] chr2 (5 HSPs)
chr2 (1-48)||(37558945-37558992)
chr2 (1-36)||(12940979-12941014)
chr2 (1-36)||(20539718-20539753)
chr2 (1-36)||(36756388-36756423)
chr2 (449-491)||(6310276-6310318)
[»] chr1 (3 HSPs)
chr1 (1-48)||(18556500-18556547)
chr1 (1-48)||(46348427-46348474)
chr1 (1-47)||(37598800-37598847)
[»] scaffold0306 (1 HSPs)
scaffold0306 (1-36)||(13380-13415)
[»] scaffold0152 (1 HSPs)
scaffold0152 (1-36)||(21912-21947)
[»] scaffold0018 (1 HSPs)
scaffold0018 (1-36)||(178863-178898)
[»] chr6 (4 HSPs)
chr6 (1-36)||(8365563-8365598)
chr6 (1-36)||(8777017-8777052)
chr6 (1-48)||(17841633-17841680)
chr6 (1-35)||(15489776-15489810)
[»] chr4 (5 HSPs)
chr4 (1-48)||(30298914-30298961)
chr4 (1-48)||(30327782-30327829)
chr4 (429-491)||(29632975-29633036)
chr4 (1-33)||(4383351-4383383)
chr4 (1-33)||(11651178-11651210)
[»] scaffold0103 (1 HSPs)
scaffold0103 (1-43)||(51784-51826)


Alignment Details
Target: chr7 (Bit Score: 221; Significance: 1e-121; HSPs: 5)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 221; E-Value: 1e-121
Query Start/End: Original strand, 189 - 492
Target Start/End: Complemental strand, 11831132 - 11830828
Alignment:
Q  189 aatttcacatgtgggcaaagcaccttaagtagcttatttggcatgattaacacttttgatcttggtcaacatttggtttgtattggttagtcaacattca 288  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  11831132 aatttcacatgtgggcaaagcaccttaagtagcttatttggcatgattaacacttttgatcttggtcaacatttggtttgtattggttagtcaacattca 11831033  T
Q  289 tcttgttggtttggtttcatttggtactctgcaagtgtggcagtttggnnnnnnnnnctgttcggtttagtttgattttgtttctttagtcgagttaaga 388  Q
    |||||||||||||||||| |||||||||||||||||||||||||||||          | |||||||||||||||||||||| |||||||| ||||||||    
T  11831032 tcttgttggtttggtttcctttggtactctgcaagtgtggcagtttggttttttttttttttcggtttagtttgattttgttcctttagtccagttaaga 11830933  T
Q  389 tcatctctattgatgtcnnnnnnna-ttgttctatttgaagaagagtgatgataggtatgcacacttaggtggcaaacccccattgtacaccccttatgt 487  Q
    ||||||||||||||||        | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||    
T  11830932 tcatctctattgatgtttttctctatttgttctatttgaagaagagtgatgataggtatgcacacttaggtggcaaacccccattgtacacccctcatgt 11830833  T
Q  488 ggcag 492  Q
    |||||    
T  11830832 ggcag 11830828  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 151; E-Value: 1e-79
Query Start/End: Original strand, 1 - 193
Target Start/End: Complemental strand, 11831447 - 11831254
Alignment:
Q  1 aattattagttgtgtcgacgtgtcagtgtcc-gtgtctgtatccgtgctaataatttgatggctttgaaacaaccaagagaaagatttacccgtaaaaca 99  Q
    |||||||||||||||||| ||||| |||||| ||||| ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  11831447 aattattagttgtgtcgatgtgtc-gtgtccagtgtccgtatccgtgttaataatttgatggctttgaaacaaccaagagaaagatttacccgtaaaaca 11831349  T
Q  100 gcctcgtaaacatgcgggcaaagtacttgtccgaacaaactgtacatactgtgctgtttacttaattgattaaatggttca-ttggtaataattt 193  Q
    |||| ||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |||||||||||||    
T  11831348 gccttgtaaacatgcgggcaaagtacttgtccgaacaaactgtacacactgtgctgtttacttaattgattaaatggttcatttggtaataattt 11831254  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 51; E-Value: 6e-20
Query Start/End: Original strand, 500 - 562
Target Start/End: Complemental strand, 11829670 - 11829608
Alignment:
Q  500 attaatttgttaggggtaattttgtctatttacactcacttctctctctttctgcccatctct 562  Q
    ||||||||||||||||||||||| |||||||||||||||||||||||||| || |||||||||    
T  11829670 attaatttgttaggggtaattttatctatttacactcacttctctctcttccttcccatctct 11829608  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 1 - 46
Target Start/End: Complemental strand, 37742538 - 37742493
Alignment:
Q  1 aattattagttgtgtcgacgtgtcagtgtccgtgtctgtatccgtg 46  Q
    |||||||||| |||||| |||| |||||||||||||||||||||||    
T  37742538 aattattagtggtgtcggcgtggcagtgtccgtgtctgtatccgtg 37742493  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 1 - 29
Target Start/End: Complemental strand, 41020511 - 41020483
Alignment:
Q  1 aattattagttgtgtcgacgtgtcagtgt 29  Q
    |||||||||||||||||||||||||||||    
T  41020511 aattattagttgtgtcgacgtgtcagtgt 41020483  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 66; Significance: 7e-29; HSPs: 7)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 66; E-Value: 7e-29
Query Start/End: Original strand, 429 - 559
Target Start/End: Original strand, 24680458 - 24680587
Alignment:
Q  429 aagagtgatgataggtatgcacacttaggtggcaaacccccattgtacaccccttatgtggcagnnnnnnnattaatttgttaggggtaattttgtctat 528  Q
    ||||||||||| ||  || ||||||||||||||||||| ||||| ||||| ||||||||||||        |||||||||||||||||||||||||||||    
T  24680458 aagagtgatgacagaaatacacacttaggtggcaaacctccattatacactccttatgtggca-atttttaattaatttgttaggggtaattttgtctat 24680556  T
Q  529 ttacactcacttctctctctttctgcccatc 559  Q
    ||||||||||||||||||||| || ||||||    
T  24680557 ttacactcacttctctctcttccttcccatc 24680587  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 1 - 36
Target Start/End: Complemental strand, 14216907 - 14216872
Alignment:
Q  1 aattattagttgtgtcgacgtgtcagtgtccgtgtc 36  Q
    ||||||||||||||||||||||||||||||||||||    
T  14216907 aattattagttgtgtcgacgtgtcagtgtccgtgtc 14216872  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 1 - 36
Target Start/End: Complemental strand, 14223036 - 14223001
Alignment:
Q  1 aattattagttgtgtcgacgtgtcagtgtccgtgtc 36  Q
    ||||||||||||||||||||||||||||||||||||    
T  14223036 aattattagttgtgtcgacgtgtcagtgtccgtgtc 14223001  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 1 - 36
Target Start/End: Original strand, 10335330 - 10335365
Alignment:
Q  1 aattattagttgtgtcgacgtgtcagtgtccgtgtc 36  Q
    ||||||||||||||||| ||||||||||||||||||    
T  10335330 aattattagttgtgtcggcgtgtcagtgtccgtgtc 10335365  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 1 - 48
Target Start/End: Original strand, 22774114 - 22774161
Alignment:
Q  1 aattattagttgtgtcgacgtgtcagtgtccgtgtctgtatccgtgct 48  Q
    |||||||||| ||||||||||||| ||||| ||||| |||||||||||    
T  22774114 aattattagtggtgtcgacgtgtctgtgtctgtgtccgtatccgtgct 22774161  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 1 - 38
Target Start/End: Original strand, 3865600 - 3865637
Alignment:
Q  1 aattattagttgtgtcgacgtgtcagtgtccgtgtctg 38  Q
    ||||||||| ||||||| ||||||||||||||||||||    
T  3865600 aattattagctgtgtcggcgtgtcagtgtccgtgtctg 3865637  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 1 - 48
Target Start/End: Complemental strand, 28812530 - 28812483
Alignment:
Q  1 aattattagttgtgtcgacgtgtcagtgtccg-tgtctgtatccgtgct 48  Q
    ||||||||||||||||| |||||| ||||||| ||||||||||||||||    
T  28812530 aattattagttgtgtcggcgtgtc-gtgtccgttgtctgtatccgtgct 28812483  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 4)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 1 - 48
Target Start/End: Original strand, 36450798 - 36450845
Alignment:
Q  1 aattattagttgtgtcgacgtgtcagtgtccgtgtctgtatccgtgct 48  Q
    ||||||||||||||||| |||||||||||||||||| |||||||||||    
T  36450798 aattattagttgtgtcggcgtgtcagtgtccgtgtccgtatccgtgct 36450845  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 1 - 43
Target Start/End: Complemental strand, 22204654 - 22204612
Alignment:
Q  1 aattattagttgtgtcgacgtgtcagtgtccgtgtctgtatcc 43  Q
    ||||||||||||||||| ||||||||||||||| || ||||||    
T  22204654 aattattagttgtgtcggcgtgtcagtgtccgtatccgtatcc 22204612  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 1 - 33
Target Start/End: Original strand, 15816173 - 15816205
Alignment:
Q  1 aattattagttgtgtcgacgtgtcagtgtccgt 33  Q
    ||||||||||||||||| |||||||||||||||    
T  15816173 aattattagttgtgtcggcgtgtcagtgtccgt 15816205  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 1 - 33
Target Start/End: Original strand, 41838167 - 41838199
Alignment:
Q  1 aattattagttgtgtcgacgtgtcagtgtccgt 33  Q
    ||||||||| |||||||||||||||||||||||    
T  41838167 aattattagctgtgtcgacgtgtcagtgtccgt 41838199  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 1 - 48
Target Start/End: Complemental strand, 14674284 - 14674237
Alignment:
Q  1 aattattagttgtgtcgacgtgtcagtgtccgtgtctgtatccgtgct 48  Q
    ||||||||| ||||||| ||||||||||||||||||||||||||||||    
T  14674284 aattattagctgtgtcggcgtgtcagtgtccgtgtctgtatccgtgct 14674237  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 1 - 48
Target Start/End: Complemental strand, 43001815 - 43001768
Alignment:
Q  1 aattattagttgtgtcgacgtgtcagtgtccgtgtctgtatccgtgct 48  Q
    |||||||||  |||||||| |||||||||||||||| |||||||||||    
T  43001815 aattattagcagtgtcgacatgtcagtgtccgtgtccgtatccgtgct 43001768  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 12 - 48
Target Start/End: Original strand, 7175074 - 7175110
Alignment:
Q  12 gtgtcgacgtgtcagtgtccgtgtctgtatccgtgct 48  Q
    ||||||| |||||||||||||||||||||||| ||||    
T  7175074 gtgtcgatgtgtcagtgtccgtgtctgtatccatgct 7175110  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 36; Significance: 0.00000000005; HSPs: 5)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 1 - 48
Target Start/End: Complemental strand, 37558992 - 37558945
Alignment:
Q  1 aattattagttgtgtcgacgtgtcagtgtccgtgtctgtatccgtgct 48  Q
    ||||||||| ||||||| |||||||||||||||||| |||||||||||    
T  37558992 aattattagctgtgtcggcgtgtcagtgtccgtgtccgtatccgtgct 37558945  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 1 - 36
Target Start/End: Original strand, 12940979 - 12941014
Alignment:
Q  1 aattattagttgtgtcgacgtgtcagtgtccgtgtc 36  Q
    |||||||||||||||| |||||||||||||||||||    
T  12940979 aattattagttgtgtcaacgtgtcagtgtccgtgtc 12941014  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 1 - 36
Target Start/End: Original strand, 20539718 - 20539753
Alignment:
Q  1 aattattagttgtgtcgacgtgtcagtgtccgtgtc 36  Q
    ||||||||| ||||||||||||||||||||||||||    
T  20539718 aattattagctgtgtcgacgtgtcagtgtccgtgtc 20539753  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 1 - 36
Target Start/End: Original strand, 36756388 - 36756423
Alignment:
Q  1 aattattagttgtgtcgacgtgtcagtgtccgtgtc 36  Q
    |||||||||||||||||||||||||||||| |||||    
T  36756388 aattattagttgtgtcgacgtgtcagtgtctgtgtc 36756423  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 449 - 491
Target Start/End: Complemental strand, 6310318 - 6310276
Alignment:
Q  449 acacttaggtggcaaacccccattgtacaccccttatgtggca 491  Q
    |||||||| |||||||||||| ||||||||||| |||||||||    
T  6310318 acacttagctggcaaaccccctttgtacaccccatatgtggca 6310276  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 36; Significance: 0.00000000005; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 1 - 48
Target Start/End: Original strand, 18556500 - 18556547
Alignment:
Q  1 aattattagttgtgtcgacgtgtcagtgtccgtgtctgtatccgtgct 48  Q
    ||||||||| ||||||| |||||||||||||||||| |||||||||||    
T  18556500 aattattagctgtgtcggcgtgtcagtgtccgtgtccgtatccgtgct 18556547  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 1 - 48
Target Start/End: Original strand, 46348427 - 46348474
Alignment:
Q  1 aattattagttgtgtcgacgtgtcagtgtccgtgtctgtatccgtgct 48  Q
    ||||||||| ||||||| |||||||||||||||||| |||||||||||    
T  46348427 aattattagctgtgtcggcgtgtcagtgtccgtgtccgtatccgtgct 46348474  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 1 - 47
Target Start/End: Complemental strand, 37598847 - 37598800
Alignment:
Q  1 aattattagttgtgtcgacgtgtcagtgtcc-gtgtctgtatccgtgc 47  Q
    ||||||||||||||||| ||||||||||||| |||||||| |||||||    
T  37598847 aattattagttgtgtcggcgtgtcagtgtccggtgtctgtgtccgtgc 37598800  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0306 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: scaffold0306
Description:

Target: scaffold0306; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 1 - 36
Target Start/End: Complemental strand, 13415 - 13380
Alignment:
Q  1 aattattagttgtgtcgacgtgtcagtgtccgtgtc 36  Q
    ||||||||||||||||| ||||||||||||||||||    
T  13415 aattattagttgtgtcggcgtgtcagtgtccgtgtc 13380  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0152 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: scaffold0152
Description:

Target: scaffold0152; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 1 - 36
Target Start/End: Original strand, 21912 - 21947
Alignment:
Q  1 aattattagttgtgtcgacgtgtcagtgtccgtgtc 36  Q
    ||||||||||||||||| ||||||||||||||||||    
T  21912 aattattagttgtgtcggcgtgtcagtgtccgtgtc 21947  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0018 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: scaffold0018
Description:

Target: scaffold0018; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 1 - 36
Target Start/End: Original strand, 178863 - 178898
Alignment:
Q  1 aattattagttgtgtcgacgtgtcagtgtccgtgtc 36  Q
    ||||||||||||||||| ||||||||||||||||||    
T  178863 aattattagttgtgtcggcgtgtcagtgtccgtgtc 178898  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 32; Significance: 0.00000001; HSPs: 4)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 1 - 36
Target Start/End: Original strand, 8365563 - 8365598
Alignment:
Q  1 aattattagttgtgtcgacgtgtcagtgtccgtgtc 36  Q
    ||||||||||||||||| ||||||||||||||||||    
T  8365563 aattattagttgtgtcggcgtgtcagtgtccgtgtc 8365598  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 1 - 36
Target Start/End: Original strand, 8777017 - 8777052
Alignment:
Q  1 aattattagttgtgtcgacgtgtcagtgtccgtgtc 36  Q
    ||||||||||||||||| ||||||||||||||||||    
T  8777017 aattattagttgtgtcggcgtgtcagtgtccgtgtc 8777052  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 1 - 48
Target Start/End: Original strand, 17841633 - 17841680
Alignment:
Q  1 aattattagttgtgtcgacgtgtcagtgtccgtgtctgtatccgtgct 48  Q
    ||||||||| ||||||| |||||||||||||||||| ||||| |||||    
T  17841633 aattattagctgtgtcggcgtgtcagtgtccgtgtccgtatcagtgct 17841680  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 1 - 35
Target Start/End: Original strand, 15489776 - 15489810
Alignment:
Q  1 aattattagttgtgtcgacgtgtcagtgtccgtgt 35  Q
    ||||||||||||||||||||||| |||||||||||    
T  15489776 aattattagttgtgtcgacgtgttagtgtccgtgt 15489810  T

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Target: chr4 (Bit Score: 32; Significance: 0.00000001; HSPs: 5)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 1 - 48
Target Start/End: Complemental strand, 30298961 - 30298914
Alignment:
Q  1 aattattagttgtgtcgacgtgtcagtgtccgtgtctgtatccgtgct 48  Q
    ||||||||| ||||||| |||||||||||||||||| ||||| |||||    
T  30298961 aattattagctgtgtcggcgtgtcagtgtccgtgtccgtatctgtgct 30298914  T

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Target: chr4; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 1 - 48
Target Start/End: Complemental strand, 30327829 - 30327782
Alignment:
Q  1 aattattagttgtgtcgacgtgtcagtgtccgtgtctgtatccgtgct 48  Q
    ||||||||| ||||||| |||||||||||||||||| ||||| |||||    
T  30327829 aattattagctgtgtcggcgtgtcagtgtccgtgtccgtatctgtgct 30327782  T

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Target: chr4; HSP #3
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 429 - 491
Target Start/End: Original strand, 29632975 - 29633036
Alignment:
Q  429 aagagtgatgataggtatgcacacttaggtggcaaacccccattgtacaccccttatgtggca 491  Q
    |||||||||||||| ||| |||||| | |||||||| | ||||| ||||||||||||||||||    
T  29632975 aagagtgatgatagatatacacactaatgtggcaaa-caccattctacaccccttatgtggca 29633036  T

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Target: chr4; HSP #4
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 1 - 33
Target Start/End: Complemental strand, 4383383 - 4383351
Alignment:
Q  1 aattattagttgtgtcgacgtgtcagtgtccgt 33  Q
    ||||||||||||| |||||||||||||||||||    
T  4383383 aattattagttgtatcgacgtgtcagtgtccgt 4383351  T

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Target: chr4; HSP #5
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 1 - 33
Target Start/End: Original strand, 11651178 - 11651210
Alignment:
Q  1 aattattagttgtgtcgacgtgtcagtgtccgt 33  Q
    ||||||||| |||||||||||||||||||||||    
T  11651178 aattattagctgtgtcgacgtgtcagtgtccgt 11651210  T

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Target: scaffold0103 (Bit Score: 31; Significance: 0.00000005; HSPs: 1)
Name: scaffold0103
Description:

Target: scaffold0103; HSP #1
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 1 - 43
Target Start/End: Complemental strand, 51826 - 51784
Alignment:
Q  1 aattattagttgtgtcgacgtgtcagtgtccgtgtctgtatcc 43  Q
    ||||||||| ||||||| |||||||||||||||||| ||||||    
T  51826 aattattagctgtgtcggcgtgtcagtgtccgtgtccgtatcc 51784  T

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