View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF16675_low_6 (Length: 544)

Name: NF16675_low_6
Description: NF16675
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF16675_low_6
NF16675_low_6
[»] chr2 (1 HSPs)
chr2 (24-101)||(26834983-26835060)
[»] chr7 (4 HSPs)
chr7 (417-485)||(34225357-34225426)
chr7 (417-485)||(34229485-34229554)
chr7 (487-529)||(34224850-34224892)
chr7 (487-529)||(34228978-34229020)
[»] chr8 (1 HSPs)
chr8 (487-529)||(44734690-44734732)
[»] chr1 (1 HSPs)
chr1 (487-529)||(41752826-41752868)


Alignment Details
Target: chr2 (Bit Score: 78; Significance: 4e-36; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 78; E-Value: 4e-36
Query Start/End: Original strand, 24 - 101
Target Start/End: Original strand, 26834983 - 26835060
Alignment:
Q  24 gatggtgaaggggtttctcacaaaggaattggacgttttgtttgttgcaaagcttagaacttttcatccaaatgtgtt 101  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  26834983 gatggtgaaggggtttctcacaaaggaattggacgttttgtttgttgcaaagcttagaacttttcatccaaatgtgtt 26835060  T

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Target: chr7 (Bit Score: 50; Significance: 2e-19; HSPs: 4)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 417 - 485
Target Start/End: Complemental strand, 34225426 - 34225357
Alignment:
Q  417 ttataatttatatgttatgtagaatatattgtcaagtgct-aacgaatgaataagaattagtctctctat 485  Q
    |||||||||||||||||||||||| ||||||||||||||| || |||||||||||||||| |||||||||    
T  34225426 ttataatttatatgttatgtagaagatattgtcaagtgctaaaagaatgaataagaattaatctctctat 34225357  T

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Target: chr7; HSP #2
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 417 - 485
Target Start/End: Complemental strand, 34229554 - 34229485
Alignment:
Q  417 ttataatttatatgttatgtagaatatattgtcaagtgct-aacgaatgaataagaattagtctctctat 485  Q
    |||||||||||||||||||||||| ||||||||||||||| || |||||||||||||||| |||||||||    
T  34229554 ttataatttatatgttatgtagaagatattgtcaagtgctaaaagaatgaataagaattaatctctctat 34229485  T

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Target: chr7; HSP #3
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 487 - 529
Target Start/End: Complemental strand, 34224892 - 34224850
Alignment:
Q  487 agaatttgtagtatgaggcattgaacttgaaagctaactttgt 529  Q
    ||||||||| |||||||||||||||||||||||||| ||||||    
T  34224892 agaatttgtggtatgaggcattgaacttgaaagctatctttgt 34224850  T

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Target: chr7; HSP #4
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 487 - 529
Target Start/End: Complemental strand, 34229020 - 34228978
Alignment:
Q  487 agaatttgtagtatgaggcattgaacttgaaagctaactttgt 529  Q
    ||||||||| |||||||||||||||||||||||||| ||||||    
T  34229020 agaatttgtggtatgaggcattgaacttgaaagctatctttgt 34228978  T

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Target: chr8 (Bit Score: 43; Significance: 0.000000000000003; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 487 - 529
Target Start/End: Original strand, 44734690 - 44734732
Alignment:
Q  487 agaatttgtagtatgaggcattgaacttgaaagctaactttgt 529  Q
    |||||||||||||||||||||||||||||||||||||||||||    
T  44734690 agaatttgtagtatgaggcattgaacttgaaagctaactttgt 44734732  T

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Target: chr1 (Bit Score: 43; Significance: 0.000000000000003; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 487 - 529
Target Start/End: Original strand, 41752826 - 41752868
Alignment:
Q  487 agaatttgtagtatgaggcattgaacttgaaagctaactttgt 529  Q
    |||||||||||||||||||||||||||||||||||||||||||    
T  41752826 agaatttgtagtatgaggcattgaacttgaaagctaactttgt 41752868  T

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