View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16675_low_9 (Length: 371)
Name: NF16675_low_9
Description: NF16675
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16675_low_9 |
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Alignment Details
Target: chr2 (Bit Score: 286; Significance: 1e-160; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 286; E-Value: 1e-160
Query Start/End: Original strand, 8 - 357
Target Start/End: Complemental strand, 31720860 - 31720511
Alignment:
| Q |
8 |
catcatcagtatcgatgtatcagtgtcagattcgtgtctaactgtcatagttcaaaattgttgctacaactataattattatacataaaaaagatgatag |
107 |
Q |
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|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |
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| T |
31720860 |
catcatcagtgtcgatgtatcagtgtcagattcgtgtctaactgtcatagttcaaaattgtcgctacaactataattattatacataaaaaagatgatag |
31720761 |
T |
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| Q |
108 |
taccggcaagcattgtcccagtaacaagctttacatggtagctaggaatactgctctttaaccaaccagacaaagcatacaccacttccaacccatcctc |
207 |
Q |
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|||| |||||||||||||||||||||||| |||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
31720760 |
tacctgcaagcattgtcccagtaacaagccttacatggtagctaggaatactactctttaaccaaccagacaaagcatacaccacttccaacccatcctc |
31720661 |
T |
|
| Q |
208 |
atgtttttcaacaaactcctgaagcaacctacatataacgaaattttcaacttttcacatgctcataccatagtaagaaaacccatcaatttcacaaagt |
307 |
Q |
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||||||||||||||||||| ||||||||||| |||||||||||||||||||||||||||| ||||||||||||||| ||||||||||||||||||||||| |
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| T |
31720660 |
atgtttttcaacaaactcccgaagcaacctatatataacgaaattttcaacttttcacatactcataccatagtaaaaaaacccatcaatttcacaaagt |
31720561 |
T |
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| Q |
308 |
aacagagctttttacacnnnnnnnnccatcaatttcagaaaactaaaaac |
357 |
Q |
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|||| |||||||||||| ||||||||||||||||||||||||| |
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| T |
31720560 |
aacaaagctttttacacaaaaaaacccatcaatttcagaaaactaaaaac |
31720511 |
T |
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