View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16676_high_16 (Length: 366)
Name: NF16676_high_16
Description: NF16676
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16676_high_16 |
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Alignment Details
Target: chr4 (Bit Score: 255; Significance: 1e-142; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 255; E-Value: 1e-142
Query Start/End: Original strand, 18 - 356
Target Start/End: Complemental strand, 20094716 - 20094376
Alignment:
| Q |
18 |
tagcttggatttttgcatttactttgtagtttgttaacgacatagggaattttgaattgagggaatcatatcatatagttt-gaaaggaatatggttgct |
116 |
Q |
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| T |
20094716 |
tagcttggatttttgcatttactttgtagtttgttaacgacatagggaattttgaattgagggaatcacatcatatagttttgaaaggaatatggttgct |
20094617 |
T |
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| Q |
117 |
ttactttattaggggaaagttaatactatagatgaaaagnnnnnnn-gttagcattccctctttataacctgaataataagaagcatgcattctcactca |
215 |
Q |
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| T |
20094616 |
ttactttattaggggaaagttaatactatagatgaaaagaaaaaaaagttagcatgccctctttataacctgaatcataagaagcatgcattctcactca |
20094517 |
T |
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| Q |
216 |
ccnnnnnnnagatctccacttaaataggtcaactaaaactttgttagtacaatttagatggtagaagactacaaaaatatttgatacgataagacatgag |
315 |
Q |
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| T |
20094516 |
cctttttttagatctccccttaaataggtcaactaaaactttgttagtacaatttagatggtagaagactataaaaatatttgatacgataagacatgag |
20094417 |
T |
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| Q |
316 |
atcgaagatgcaattttacacttcttaatacttattgtgtg |
356 |
Q |
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|||||||||||||||||||||||||||| | |||||||||| |
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| T |
20094416 |
atcgaagatgcaattttacacttcttaacatttattgtgtg |
20094376 |
T |
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