View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16676_high_17 (Length: 358)
Name: NF16676_high_17
Description: NF16676
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16676_high_17 |
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| [»] chr1 (1 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 332; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 332; E-Value: 0
Query Start/End: Original strand, 15 - 358
Target Start/End: Complemental strand, 52376743 - 52376401
Alignment:
| Q |
15 |
cacagacagtatgatggatggtgttcatctttgatcaactcctcttgttcttgctacccagcaacaaagacaaatagaatagaatcctgaagaagaaacc |
114 |
Q |
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| T |
52376743 |
cacagacagtatgatggatggtgttcatctt-gatcaactcctcttgttcttgctacccagcaacaaagacaaatagaatagaatcctgaagaagaaacc |
52376645 |
T |
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| Q |
115 |
ccaagccacagttacccacaaacaattccacttgctcaaatccgtcaccgcattttgcttcaacaaatcagttccagttgtcaaacaagtagacgctgtg |
214 |
Q |
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| T |
52376644 |
ccaagccacagttacccacaaacaattccacttgctcaaatccgtcaccgcattttgcttcaacaaatcagtaccagttgtcaaacaagtagacgctgtg |
52376545 |
T |
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| Q |
215 |
attttcattcctaatgtatcactcatactgtccaacaatttcaacttcaatgcatcagacactgaagcaagaggtgagttatcaaaaatctgcacccccc |
314 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
52376544 |
attttcattcctaatgtatcactcatactgtccaacaatttcaacttcaatgcatcagacactgaagcaagaggtgagttatcaaaaatctgcacccccc |
52376445 |
T |
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| Q |
315 |
tcacaaaacatttagctgcatcactaaactcgttctgcagaact |
358 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||| |
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| T |
52376444 |
tcacaaaacatttagctgcatcactaaactcgttctgcagaact |
52376401 |
T |
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