View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16676_high_22 (Length: 320)
Name: NF16676_high_22
Description: NF16676
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16676_high_22 |
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Alignment Details
Target: chr1 (Bit Score: 228; Significance: 1e-126; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 228; E-Value: 1e-126
Query Start/End: Original strand, 39 - 308
Target Start/End: Complemental strand, 43047036 - 43046763
Alignment:
| Q |
39 |
ttggtattcgattatcataatcatgctgaaattatgtgcctgtttaattgtaattctgaatacaaaaagtgataatcgtttatgtttttaaaaggtggtc |
138 |
Q |
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| T |
43047036 |
ttggtattcgattatcataatcatgctgaaattatgcgcctgtttaattgtaattctgaatacaaaaagtgataatcgtttatgtttttaaaaggtggtc |
43046937 |
T |
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| Q |
139 |
ttactttgttgtgatggtgttaactttttggatcgata-ttccgagttttatgttgattcattcagttaatacaacataactgatataaacatgcgtatc |
237 |
Q |
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|||||||||||||||||||||||||||||||||| ||| || ||||||||||||||||||||||| ||||||||||||||||||||| ||||||||||| |
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| T |
43046936 |
ttactttgttgtgatggtgttaactttttggatccatattttcgagttttatgttgattcattcatgtaatacaacataactgatatacacatgcgtatc |
43046837 |
T |
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| Q |
238 |
tata---ttttgtttctggattctgctgaaacatcatatttcgtgcccgatgtatattctgttgctgacatatt |
308 |
Q |
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|||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
43046836 |
tatatttttttgtttctggattctgctgaaacatcatatttcgtgcccgatgtatattctgttgctgacatatt |
43046763 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 45 - 80
Target Start/End: Complemental strand, 43046646 - 43046611
Alignment:
| Q |
45 |
ttcgattatcataatcatgctgaaattatgtgcctg |
80 |
Q |
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| T |
43046646 |
ttcgattatcataatcatgctgaaattatgtgcctg |
43046611 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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