View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF16676_high_24 (Length: 296)

Name: NF16676_high_24
Description: NF16676
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF16676_high_24
NF16676_high_24
[»] chr6 (9 HSPs)
chr6 (1-292)||(20237926-20238217)
chr6 (1-292)||(22131910-22132201)
chr6 (1-162)||(22204989-22205150)
chr6 (1-291)||(20086013-20086303)
chr6 (2-162)||(24385201-24385361)
chr6 (1-291)||(20205333-20205623)
chr6 (1-291)||(22099356-22099646)
chr6 (1-171)||(21971894-21972067)
chr6 (236-292)||(24385072-24385128)
[»] scaffold0264 (2 HSPs)
scaffold0264 (1-162)||(15962-16123)
scaffold0264 (257-288)||(16218-16249)
[»] scaffold0074 (2 HSPs)
scaffold0074 (1-199)||(47781-47976)
scaffold0074 (257-291)||(47689-47723)
[»] scaffold0007 (1 HSPs)
scaffold0007 (1-199)||(5302-5503)


Alignment Details
Target: chr6 (Bit Score: 200; Significance: 1e-109; HSPs: 9)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 200; E-Value: 1e-109
Query Start/End: Original strand, 1 - 292
Target Start/End: Original strand, 20237926 - 20238217
Alignment:
Q  1 agtgattgtactgtggtttcttgagcaattataggaaagataaactggatcttgtgaatatcttgaatcttgttttgaattatttgtttgaggaacaagc 100  Q
    ||||||||||||||||||||||| |||||||| ||||||||||||||||||||||| | |  | |||||||||||||||| |||||||||||||||||||    
T  20237926 agtgattgtactgtggtttcttgggcaattatcggaaagataaactggatcttgtgtaaaattagaatcttgttttgaatcatttgtttgaggaacaagc 20238025  T
Q  101 acatttgttgaaggagcattgatagacctataaaaaggatatagttcatacataatattacaacttggatataaatttctcccaccctgctttccatcat 200  Q
     |||||  ||||||||||||  |||| ||||||||||||||||| |||||| ||||||||||||| ||||||||||||||||||||||||||||||||||    
T  20238026 tcatttagtgaaggagcattagtagatctataaaaaggatatagctcatacctaatattacaactaggatataaatttctcccaccctgctttccatcat 20238125  T
Q  201 acacatatgaaagttcactaatagcaagaccgaggcaggttctgcaatcatagaacgacaagtctggcgtgcactgagctagacagtaaagc 292  Q
    |||||| ||||||||  |||||||||  ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||    
T  20238126 acacatttgaaagtttcctaatagcacaaccgaggcaggttctgcaatcattgaacgacaagtctggcgtgcactgagctagacagtaaagc 20238217  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 200; E-Value: 1e-109
Query Start/End: Original strand, 1 - 292
Target Start/End: Original strand, 22131910 - 22132201
Alignment:
Q  1 agtgattgtactgtggtttcttgagcaattataggaaagataaactggatcttgtgaatatcttgaatcttgttttgaattatttgtttgaggaacaagc 100  Q
    ||||||||||||||||||||||| |||||||| ||||||||||||||||||||||| | |  | |||||||||||||||| |||||||||||||||||||    
T  22131910 agtgattgtactgtggtttcttgggcaattatcggaaagataaactggatcttgtgtaaaattagaatcttgttttgaatcatttgtttgaggaacaagc 22132009  T
Q  101 acatttgttgaaggagcattgatagacctataaaaaggatatagttcatacataatattacaacttggatataaatttctcccaccctgctttccatcat 200  Q
     |||||  ||||||||||||  |||| ||||||||||||||||| |||||| ||||||||||||| ||||||||||||||||||||||||||||||||||    
T  22132010 tcatttagtgaaggagcattagtagatctataaaaaggatatagctcatacctaatattacaactaggatataaatttctcccaccctgctttccatcat 22132109  T
Q  201 acacatatgaaagttcactaatagcaagaccgaggcaggttctgcaatcatagaacgacaagtctggcgtgcactgagctagacagtaaagc 292  Q
    |||||| ||||||||  |||||||||  ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||    
T  22132110 acacatttgaaagtttcctaatagcacaaccgaggcaggttctgcaatcattgaacgacaagtctggcgtgcactgagctagacagtaaagc 22132201  T

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Target: chr6; HSP #3
Raw Score: 118; E-Value: 3e-60
Query Start/End: Original strand, 1 - 162
Target Start/End: Complemental strand, 22205150 - 22204989
Alignment:
Q  1 agtgattgtactgtggtttcttgagcaattataggaaagataaactggatcttgtgaatatcttgaatcttgttttgaattatttgtttgaggaacaagc 100  Q
    ||||||| |||||||||||||||||||||||||||||||||||| ||||||||||||| |||| ||||||||  |||||| |||||||||||||||||||    
T  22205150 agtgattttactgtggtttcttgagcaattataggaaagataaaatggatcttgtgaaaatctagaatcttgggttgaatgatttgtttgaggaacaagc 22205051  T
Q  101 acatttgttgaaggagcattgatagacctataaaaaggatatagttcatacataatattaca 162  Q
     |||||| |||||||||||| |||||||||||||||||||||||||||||| ||||||||||    
T  22205050 tcatttggtgaaggagcattaatagacctataaaaaggatatagttcatacctaatattaca 22204989  T

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Target: chr6; HSP #4
Raw Score: 116; E-Value: 5e-59
Query Start/End: Original strand, 1 - 291
Target Start/End: Original strand, 20086013 - 20086303
Alignment:
Q  1 agtgattgtactgtggtttcttgagcaattataggaaagataaactggatcttgtgaatatcttgaatcttgttttgaattatttgtttgaggaacaagc 100  Q
    |||||||||||||| ||||||||||||||||||||||||||||| ||||||||||||| |||| |||||||| ||||||| |||||||||||||||||||    
T  20086013 agtgattgtactgttgtttcttgagcaattataggaaagataaattggatcttgtgaaaatctagaatcttggtttgaatgatttgtttgaggaacaagc 20086112  T
Q  101 acatttgttgaaggagcattgatagacctataaaaaggatatagttcatacataatattacaacttggatataaatttctcccaccctgctttccatca- 199  Q
     ||||||  ||||||||||| |||||||||||||||||||||| ||||||| ||| |||||| || ||| | | |  ||||||||||  ||||||||||     
T  20086113 tcatttggcgaaggagcattaatagacctataaaaaggatataattcatacctaacattacagctaggaaaaagaactctcccacccacctttccatcac 20086212  T
Q  200 tacacatatgaaagttcactaatagcaagaccgaggcaggttctgcaatcatagaacgacaagtctggcgtgcactgagctagacagtaaag 291  Q
     |||  || |||  ||| | |||||||  |  ||| |||||||||||||||  |   |||||||| ||||||||||||||||||||||||||    
T  20086213 aacagctaggaagtttctc-aatagcactattgagacaggttctgcaatcaccgggtgacaagtccggcgtgcactgagctagacagtaaag 20086303  T

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Target: chr6; HSP #5
Raw Score: 101; E-Value: 4e-50
Query Start/End: Original strand, 2 - 162
Target Start/End: Complemental strand, 24385361 - 24385201
Alignment:
Q  2 gtgattgtactgtggtttcttgagcaattataggaaagataaactggatcttgtgaatatcttgaatcttgttttgaattatttgtttgaggaacaagca 101  Q
    |||||| || ||||||||||||||||||||||||||||||||| ||||||||||||| |||| |||||||||||||||| |||||||||||||||||||     
T  24385361 gtgattatattgtggtttcttgagcaattataggaaagataaattggatcttgtgaaaatctagaatcttgttttgaatcatttgtttgaggaacaagct 24385262  T
Q  102 catttgttgaaggagcattgatagacctataaaaaggatatagttcatacataatattaca 162  Q
    |||||| |||||||||| | |||||  ||||||||||| ||||||||||| |||| |||||    
T  24385261 catttgatgaaggagcaataatagatttataaaaaggaaatagttcatacctaatgttaca 24385201  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 67; E-Value: 8e-30
Query Start/End: Original strand, 1 - 291
Target Start/End: Original strand, 20205333 - 20205623
Alignment:
Q  1 agtgattgtactgtggtttcttgagcaattataggaaagataaactggatcttgtgaatatcttgaatcttgttttgaattatttgtttgaggaacaagc 100  Q
    |||||||||  ||||||||||||||||||||||||||||||||| ||  |||| ||||  | | ||||||||||| |||| ||||||| ||||| | |||    
T  20205333 agtgattgtgttgtggtttcttgagcaattataggaaagataaaatgattcttctgaaagtttagaatcttgtttggaatcatttgttcgaggagctagc 20205432  T
Q  101 acatttgttgaaggagcattgatagacctataaaaaggatatagttcatacataatattacaacttggatataaatttctcccaccctgctttccatcat 200  Q
     |||||| |||| || || | |||||||||||||| ||||||| ||||||| | | |||||| || ||||| | |  |||||| |||  ||||||||||     
T  20205433 tcatttggtgaaagaacagtaatagacctataaaatggatataattcataccttacattacagctaggataaagaaatctccctcccacctttccatcac 20205532  T
Q  201 acacatatgaaagttcactaatagcaagaccgaggcaggttctgcaatcatagaacgacaagtctggcgtgcactgagctagacagtaaag 291  Q
    |    | ||||| ||    |||||||  || ||| ||||||||||||||||    |||||| || ||||||||||||||||||||||||||    
T  20205533 aactctttgaaactttctcaatagcactactgagacaggttctgcaatcattaggcgacaaatccggcgtgcactgagctagacagtaaag 20205623  T

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Target: chr6; HSP #7
Raw Score: 67; E-Value: 8e-30
Query Start/End: Original strand, 1 - 291
Target Start/End: Original strand, 22099356 - 22099646
Alignment:
Q  1 agtgattgtactgtggtttcttgagcaattataggaaagataaactggatcttgtgaatatcttgaatcttgttttgaattatttgtttgaggaacaagc 100  Q
    |||||||||  ||||||||||||||||||||||||||||||||| ||  |||| ||||  | | ||||||||||| |||| ||||||| ||||| | |||    
T  22099356 agtgattgtgttgtggtttcttgagcaattataggaaagataaaatgattcttctgaaagtttagaatcttgtttggaatcatttgttcgaggagctagc 22099455  T
Q  101 acatttgttgaaggagcattgatagacctataaaaaggatatagttcatacataatattacaacttggatataaatttctcccaccctgctttccatcat 200  Q
     |||||| |||| || || | |||||||||||||| ||||||| ||||||| | | |||||| || ||||| | |  |||||| |||  ||||||||||     
T  22099456 tcatttggtgaaagaacagtaatagacctataaaatggatataattcataccttacattacagctaggataaagaaatctccctcccacctttccatcac 22099555  T
Q  201 acacatatgaaagttcactaatagcaagaccgaggcaggttctgcaatcatagaacgacaagtctggcgtgcactgagctagacagtaaag 291  Q
    |    | ||||| ||    |||||||  || ||| ||||||||||||||||    |||||| || ||||||||||||||||||||||||||    
T  22099556 aactctttgaaactttctcaatagcactactgagacaggttctgcaatcattaggcgacaaatccggcgtgcactgagctagacagtaaag 22099646  T

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Target: chr6; HSP #8
Raw Score: 59; E-Value: 5e-25
Query Start/End: Original strand, 1 - 171
Target Start/End: Original strand, 21971894 - 21972067
Alignment:
Q  1 agtgattgtactgtggtttcttgagcaattataggaaagataaactggatcttgtgaa--tatctt-gaatcttgttttgaattatttgtttgaggaaca 97  Q
    |||||||||| |||  |||||||||||||||||||||||||||| |||||||| ||||  ||| || ||||||||| | |||| ||||||||||||| ||    
T  21971894 agtgattgtattgtaatttcttgagcaattataggaaagataaaatggatcttctgaaagtattttagaatcttgtatggaatcatttgtttgaggagca 21971993  T
Q  98 agcacatttgttgaaggagcattgatagacctataaaaaggatatagttcatacataatattacaacttggata 171  Q
    ||| ||||||  ||| || |||   ||||||||||||| ||||||| ||||||| ||| |||||| || |||||    
T  21971994 agctcatttggggaaagaacataagtagacctataaaatggatataattcatacctaacattacagctaggata 21972067  T

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Target: chr6; HSP #9
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 236 - 292
Target Start/End: Complemental strand, 24385128 - 24385072
Alignment:
Q  236 caggttctgcaatcatagaacgacaagtctggcgtgcactgagctagacagtaaagc 292  Q
    ||||||||||||||||     ||||||||||||||||||||||||| | ||||||||    
T  24385128 caggttctgcaatcattaggggacaagtctggcgtgcactgagctaaatagtaaagc 24385072  T

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Target: scaffold0264 (Bit Score: 114; Significance: 8e-58; HSPs: 2)
Name: scaffold0264
Description:

Target: scaffold0264; HSP #1
Raw Score: 114; E-Value: 8e-58
Query Start/End: Original strand, 1 - 162
Target Start/End: Original strand, 15962 - 16123
Alignment:
Q  1 agtgattgtactgtggtttcttgagcaattataggaaagataaactggatcttgtgaatatcttgaatcttgttttgaattatttgtttgaggaacaagc 100  Q
    |||||||||||||| ||||||||||||||||||||||||||||| ||||||||||||| |||| |||||||| ||||||| |||||||||||||||||||    
T  15962 agtgattgtactgttgtttcttgagcaattataggaaagataaattggatcttgtgaaaatctagaatcttggtttgaatgatttgtttgaggaacaagc 16061  T
Q  101 acatttgttgaaggagcattgatagacctataaaaaggatatagttcatacataatattaca 162  Q
     ||||||  ||||||||||| |||||||||||||||||||||||||||||| ||| ||||||    
T  16062 tcatttggcgaaggagcattaatagacctataaaaaggatatagttcatacctaacattaca 16123  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0264; HSP #2
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 257 - 288
Target Start/End: Original strand, 16218 - 16249
Alignment:
Q  257 gacaagtctggcgtgcactgagctagacagta 288  Q
    ||||||||||||||||||||||||||||||||    
T  16218 gacaagtctggcgtgcactgagctagacagta 16249  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0074 (Bit Score: 109; Significance: 7e-55; HSPs: 2)
Name: scaffold0074
Description:

Target: scaffold0074; HSP #1
Raw Score: 109; E-Value: 7e-55
Query Start/End: Original strand, 1 - 199
Target Start/End: Complemental strand, 47976 - 47781
Alignment:
Q  1 agtgattgtactgtggtttcttgagcaattataggaaagataaactggatcttgtgaatatcttgaatcttgttttgaattatttgtttgaggaacaagc 100  Q
    ||||||||||||||||||||||| |||||||||||||||||||| ||||||||||||| |||| ||||||||||||||||  ||||||||||||||||||    
T  47976 agtgattgtactgtggtttcttgggcaattataggaaagataaattggatcttgtgaaaatctagaatcttgttttgaatgttttgtttgaggaacaagc 47877  T
Q  101 acatttgttgaaggagcattgatagacctataaaaaggatatagttcatacataatattacaacttggatataaatttctcccaccctgctttccatca 199  Q
     |||||| |||   || |||||||||||||||||||||||||||||||||| ||| |||||| || ||| | |||    ||||||||||||||||||||    
T  47876 tcatttggtga---agtattgatagacctataaaaaggatatagttcatacctaacattacagctaggaaaaaaaaccatcccaccctgctttccatca 47781  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0074; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 257 - 291
Target Start/End: Complemental strand, 47723 - 47689
Alignment:
Q  257 gacaagtctggcgtgcactgagctagacagtaaag 291  Q
    |||||||||||||||||||||||||||||||||||    
T  47723 gacaagtctggcgtgcactgagctagacagtaaag 47689  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0007 (Bit Score: 100; Significance: 2e-49; HSPs: 1)
Name: scaffold0007
Description:

Target: scaffold0007; HSP #1
Raw Score: 100; E-Value: 2e-49
Query Start/End: Original strand, 1 - 199
Target Start/End: Complemental strand, 5503 - 5302
Alignment:
Q  1 agtgattgtactgtggtttcttgagcaattataggaaagataaactggatcttgtgaatatcttgaatcttgttttgaattatttgtttgaggaacaagc 100  Q
    |||||||||||| |||||||||||||||||||||||||||||||  ||||||| |||| |||| | ||||||||||||||  ||||||||||||||||||    
T  5503 agtgattgtactttggtttcttgagcaattataggaaagataaaagggatcttttgaaaatctagtatcttgttttgaatagtttgtttgaggaacaagc 5404  T
Q  101 acatttgtt---gaaggagcattgatagacctataaaaaggatatagttcatacataatattacaacttggatataaatttctcccaccctgctttccat 197  Q
     |||||| |   |||| || |||||||||||||||||||||||||||||||||| |||||||||| || ||| | | |  ||||||||||| ||||||||    
T  5403 tcatttggtgaagaagtagtattgatagacctataaaaaggatatagttcatacctaatattacagctaggaaaaacaactctcccaccctcctttccat 5304  T
Q  198 ca 199  Q
    ||    
T  5303 ca 5302  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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