View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF16676_high_3 (Length: 699)

Name: NF16676_high_3
Description: NF16676
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF16676_high_3
NF16676_high_3
[»] chr4 (16 HSPs)
chr4 (14-329)||(12213411-12213726)
chr4 (491-684)||(12219318-12219513)
chr4 (346-422)||(12219240-12219316)
chr4 (18-74)||(21857632-21857689)
chr4 (18-74)||(21913495-21913552)
chr4 (19-71)||(31891893-31891945)
chr4 (18-77)||(38575560-38575619)
chr4 (18-72)||(22535221-22535275)
chr4 (21-73)||(29616740-29616792)
chr4 (18-72)||(6644042-6644096)
chr4 (18-72)||(53139986-53140040)
chr4 (19-76)||(29617597-29617654)
chr4 (18-74)||(29762437-29762494)
chr4 (22-71)||(42259304-42259353)
chr4 (15-74)||(24317643-24317703)
chr4 (21-72)||(48084036-48084088)
[»] chr6 (4 HSPs)
chr6 (96-245)||(11720540-11720686)
chr6 (14-72)||(21784303-21784361)
chr6 (17-72)||(10624480-10624536)
chr6 (17-72)||(23766979-23767035)
[»] chr7 (15 HSPs)
chr7 (15-76)||(23678895-23678956)
chr7 (16-90)||(24212309-24212386)
chr7 (17-75)||(4237191-4237250)
chr7 (20-71)||(31308264-31308314)
chr7 (19-72)||(30022480-30022534)
chr7 (19-72)||(30023275-30023329)
chr7 (18-72)||(36787434-36787488)
chr7 (18-72)||(37711326-37711380)
chr7 (20-76)||(21387263-21387320)
chr7 (19-72)||(28290032-28290085)
chr7 (18-74)||(12231029-12231085)
chr7 (17-72)||(17272581-17272637)
chr7 (17-72)||(26831551-26831607)
chr7 (17-72)||(34959173-34959229)
chr7 (19-75)||(42260703-42260759)
[»] chr3 (15 HSPs)
chr3 (19-72)||(45149840-45149893)
chr3 (18-71)||(34921178-34921231)
chr3 (21-73)||(51313290-51313342)
chr3 (18-72)||(1033849-1033903)
chr3 (18-72)||(20411236-20411290)
chr3 (18-72)||(24814098-24814152)
chr3 (18-72)||(25360349-25360402)
chr3 (14-71)||(25555489-25555547)
chr3 (18-72)||(34503652-34503706)
chr3 (18-72)||(41222695-41222749)
chr3 (18-72)||(44519051-44519105)
chr3 (19-72)||(24828290-24828343)
chr3 (18-74)||(36951923-36951980)
chr3 (28-77)||(47731859-47731908)
chr3 (22-71)||(55482385-55482434)
[»] chr5 (15 HSPs)
chr5 (16-72)||(5790542-5790598)
chr5 (18-72)||(5573987-5574041)
chr5 (22-83)||(42546204-42546265)
chr5 (17-72)||(6834507-6834562)
chr5 (18-72)||(41411821-41411876)
chr5 (18-72)||(5382426-5382480)
chr5 (17-71)||(6809510-6809564)
chr5 (18-72)||(11156970-11157024)
chr5 (21-71)||(21085768-21085818)
chr5 (18-72)||(27188756-27188810)
chr5 (18-72)||(36811594-36811648)
chr5 (18-72)||(42341923-42341977)
chr5 (18-71)||(3976108-3976161)
chr5 (19-72)||(21362537-21362590)
chr5 (18-73)||(4104990-4105046)
[»] scaffold0004 (1 HSPs)
scaffold0004 (18-72)||(38229-38284)
[»] chr8 (14 HSPs)
chr8 (17-72)||(37746321-37746376)
chr8 (20-72)||(11180007-11180059)
chr8 (18-74)||(38257177-38257233)
chr8 (21-72)||(6743633-6743684)
chr8 (18-72)||(12765112-12765167)
chr8 (18-72)||(15602087-15602142)
chr8 (19-72)||(26431598-26431652)
chr8 (21-71)||(32448967-32449017)
chr8 (18-83)||(39863361-39863426)
chr8 (17-72)||(9116263-9116319)
chr8 (20-72)||(27071602-27071653)
chr8 (21-77)||(41450470-41450525)
chr8 (17-72)||(44458600-44458656)
chr8 (17-72)||(44466133-44466189)
[»] chr2 (9 HSPs)
chr2 (17-72)||(6731423-6731478)
chr2 (18-72)||(18736659-18736713)
chr2 (18-72)||(44748007-44748062)
chr2 (18-72)||(17540403-17540457)
chr2 (18-72)||(28149886-28149940)
chr2 (22-72)||(45160372-45160422)
chr2 (21-74)||(135968-136021)
chr2 (20-72)||(7275650-7275702)
chr2 (16-72)||(39939299-39939355)
[»] chr1 (13 HSPs)
chr1 (17-72)||(38064784-38064839)
chr1 (22-72)||(17825848-17825898)
chr1 (18-72)||(30634320-30634374)
chr1 (18-72)||(32186088-32186142)
chr1 (18-72)||(32537230-32537284)
chr1 (18-72)||(48751568-48751622)
chr1 (19-74)||(22775461-22775517)
chr1 (18-76)||(45216770-45216829)
chr1 (18-72)||(16834389-16834443)
chr1 (18-72)||(36723308-36723362)
chr1 (18-71)||(18542295-18542348)
chr1 (19-72)||(26615828-26615881)
chr1 (21-72)||(30754013-30754065)
[»] scaffold0140 (1 HSPs)
scaffold0140 (14-71)||(4394-4452)


Alignment Details
Target: chr4 (Bit Score: 245; Significance: 1e-135; HSPs: 16)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 245; E-Value: 1e-135
Query Start/End: Original strand, 14 - 329
Target Start/End: Original strand, 12213411 - 12213726
Alignment:
Q  14 caaaggggtaattgaaattttattaatgtcagagagtgattgacgaaacttacaatttcggagacaattggctatttcgagcataagatagtgtaaaatg 113  Q
    |||||| |||||||||||||| |||| ||||||| ||||| |||||||||||||||||||  |  ||||| |||||||||||||||||||||||||||||    
T  12213411 caaaggagtaattgaaattttgttaacgtcagagggtgatggacgaaacttacaatttcgagggtaattgcctatttcgagcataagatagtgtaaaatg 12213510  T
Q  114 gttgttaaatttaccacaaccgaacattcatagatttcaatgtataaaactagtatgcattcaaaaaacgccatatcatgatttaatggttctttagaat 213  Q
    ||||||||| ||||||| |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||    
T  12213511 gttgttaaaattaccaccaccgaacattcatagatttcaatgtataaaactagtatgcattc-aaaaacgccatatcatgatttaatggttctttagaat 12213609  T
Q  214 ggacaaattgttcatgccacaatgaaggtcc-agggaaaggggtagtctaaagagtgtgcaataaacggtgacgatgatgatttcatggcagatcggcca 312  Q
    ||||||||||||||||||||||||||||||| ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  12213610 ggacaaattgttcatgccacaatgaaggtccaaggaaaaggggtagtctaaagagtgtgcaataaacggtgacgatgatgatttcatggcagatcggcca 12213709  T
Q  313 tgggaaccttagagaaa 329  Q
    |||||| ||||||||||    
T  12213710 tgggaatcttagagaaa 12213726  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 177; E-Value: 5e-95
Query Start/End: Original strand, 491 - 684
Target Start/End: Original strand, 12219318 - 12219513
Alignment:
Q  491 atcaataatatatatttaagacggtaaaa--aagtatttaaaatcacttcaataattttgaaaccgaaaatttcggtctatgtttccatccaatcgatcc 588  Q
    |||||||||||||||||||||||||||||  |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  12219318 atcaataatatatatttaagacggtaaaaaaaagtatttaaaatcacttcaataattttgaaaccgaaaatttcggtctatgtttccatccaatcgatcc 12219417  T
Q  589 caaaatccttttgaaattggtaaattgaaggtttgcattaacatgtacacaattagtttaggcagccagcatattttagtatacacgtaaatggtg 684  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| ||||||||||||||    
T  12219418 caaaatccttttgaaattggtaaattgaaggtttgcattaacatgtacaaaattagtttaggcagccagcatattttagtacacacgtaaatggtg 12219513  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 65; E-Value: 3e-28
Query Start/End: Original strand, 346 - 422
Target Start/End: Original strand, 12219240 - 12219316
Alignment:
Q  346 gtgtccatctttccgctagtattaataaagaaatagaacatgtgtaaccgggttggacatgtgaatgattaggtagg 422  Q
    |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |||||||    
T  12219240 gtgttcatctttccgctagtattaataaagaaatagaacatgtgtaaccgggttggacatgcgaatgatcaggtagg 12219316  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 18 - 74
Target Start/End: Complemental strand, 21857689 - 21857632
Alignment:
Q  18 ggggtaattgaaattttattaatgtcagag-agtgattgacgaaacttacaatttcgg 74  Q
    |||||||||||| |||| ||||| |||||| |||||||||||||||||||||||||||    
T  21857689 ggggtaattgaagttttgttaatttcagaggagtgattgacgaaacttacaatttcgg 21857632  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 18 - 74
Target Start/End: Complemental strand, 21913552 - 21913495
Alignment:
Q  18 ggggtaattgaaattttattaatgtcagag-agtgattgacgaaacttacaatttcgg 74  Q
    |||||||||||| |||| ||||| |||||| |||||||||||||||||||||||||||    
T  21913552 ggggtaattgaagttttgttaatttcagaggagtgattgacgaaacttacaatttcgg 21913495  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 19 - 71
Target Start/End: Complemental strand, 31891945 - 31891893
Alignment:
Q  19 gggtaattgaaattttattaatgtcagagagtgattgacgaaacttacaattt 71  Q
    ||||||||||| |||| ||||||||||||||| |||||| |||||||||||||    
T  31891945 gggtaattgaagttttgttaatgtcagagagtaattgacaaaacttacaattt 31891893  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 18 - 77
Target Start/End: Complemental strand, 38575619 - 38575560
Alignment:
Q  18 ggggtaattgaaattttattaatgtcagagagtgattgacgaaacttacaatttcggaga 77  Q
    |||||||||||| |||| ||||||||||||  | ||||||||||||||||||||| ||||    
T  38575619 ggggtaattgaagttttgttaatgtcagaggataattgacgaaacttacaatttcagaga 38575560  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 18 - 72
Target Start/End: Complemental strand, 22535275 - 22535221
Alignment:
Q  18 ggggtaattgaaattttattaatgtcagagagtgattgacgaaacttacaatttc 72  Q
    ||||||||||||||||| ||||| ||||| ||| ||||| |||||||||||||||    
T  22535275 ggggtaattgaaattttgttaatttcagaaagtaattgatgaaacttacaatttc 22535221  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 21 - 73
Target Start/End: Complemental strand, 29616792 - 29616740
Alignment:
Q  21 gtaattgaaattttattaatgtcagagagtgattgacgaaacttacaatttcg 73  Q
    |||||||||||||| ||||| |||| | || ||||||||||||||||||||||    
T  29616792 gtaattgaaattttgttaatatcagggggtaattgacgaaacttacaatttcg 29616740  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 18 - 72
Target Start/End: Complemental strand, 6644096 - 6644042
Alignment:
Q  18 ggggtaattgaaattttattaatgtcagagagtgattgacgaaacttacaatttc 72  Q
    |||||||||||| |||| ||||| |||| | || |||||||||||||||||||||    
T  6644096 ggggtaattgaagttttgttaatttcagggggtaattgacgaaacttacaatttc 6644042  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 18 - 72
Target Start/End: Original strand, 53139986 - 53140040
Alignment:
Q  18 ggggtaattgaaattttattaatgtcagagagtgattgacgaaacttacaatttc 72  Q
    |||||||||||| |||| ||||| |||| | || |||||||||||||||||||||    
T  53139986 ggggtaattgaagttttgttaatttcagggggtaattgacgaaacttacaatttc 53140040  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 19 - 76
Target Start/End: Original strand, 29617597 - 29617654
Alignment:
Q  19 gggtaattgaaattttattaatgtcagagagtgattgacgaaacttacaatttcggag 76  Q
    ||||||||||| |||| ||||| ||||   || |||||||||||||||||||||||||    
T  29617597 gggtaattgaagttttgttaatatcaggtggtaattgacgaaacttacaatttcggag 29617654  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 18 - 74
Target Start/End: Original strand, 29762437 - 29762494
Alignment:
Q  18 ggggtaattgaaattttattaatgtcagag-agtgattgacgaaacttacaatttcgg 74  Q
    |||||||||||| |||  ||||| |||||| ||| |||||||||||||||||||||||    
T  29762437 ggggtaattgaagtttcgttaatttcagaggagtaattgacgaaacttacaatttcgg 29762494  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 22 - 71
Target Start/End: Complemental strand, 42259353 - 42259304
Alignment:
Q  22 taattgaaattttattaatgtcagagagtgattgacgaaacttacaattt 71  Q
    |||||||| |||||||||| |||  |||| ||||||||||||||||||||    
T  42259353 taattgaagttttattaatttcaaggagtaattgacgaaacttacaattt 42259304  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 15 - 74
Target Start/End: Complemental strand, 24317703 - 24317643
Alignment:
Q  15 aaaggggtaattgaaattttattaatgtcag-agagtgattgacgaaacttacaatttcgg 74  Q
    |||| ||||||||||||||| ||||| |||| ||| | ||||| |||||||||||||||||    
T  24317703 aaagaggtaattgaaattttgttaatttcaggagattaattgatgaaacttacaatttcgg 24317643  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 21 - 72
Target Start/End: Original strand, 48084036 - 48084088
Alignment:
Q  21 gtaattgaaattttattaatgtcaga-gagtgattgacgaaacttacaatttc 72  Q
    |||||||||||||| ||||| ||||| | || |||||||||||||||||||||    
T  48084036 gtaattgaaattttgttaatttcagaagggtaattgacgaaacttacaatttc 48084088  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 87; Significance: 2e-41; HSPs: 4)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 87; E-Value: 2e-41
Query Start/End: Original strand, 96 - 245
Target Start/End: Original strand, 11720540 - 11720686
Alignment:
Q  96 ataagatagtgtaaaatggttgttaaatttaccacaaccgaacattcatagatttcaatgtataaaactagtatgcattcaaaaaacgccatatcatgat 195  Q
    |||||| |||||||||||||||||||| ||||||| ||| || ||| ||||||||||||||||||||| |||||||||| |||||| ||||||||||| |    
T  11720540 ataagaaagtgtaaaatggttgttaaaattaccaccaccaaaaatttatagatttcaatgtataaaaccagtatgcatt-aaaaaatgccatatcatgtt 11720638  T
Q  196 ttaatggttctttagaatggacaaattgttcatgccacaatgaaggtcca 245  Q
    |||||||||||||||||||||||| |  |||||| |||||||||||||||    
T  11720639 ttaatggttctttagaatggacaagt--ttcatgtcacaatgaaggtcca 11720686  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 14 - 72
Target Start/End: Original strand, 21784303 - 21784361
Alignment:
Q  14 caaaggggtaattgaaattttattaatgtcagagagtgattgacgaaacttacaatttc 72  Q
    |||||||||||||||| |||| | ||| |||||| || ||||| |||||||||||||||    
T  21784303 caaaggggtaattgaagttttgtaaatttcagagggtaattgatgaaacttacaatttc 21784361  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 17 - 72
Target Start/End: Complemental strand, 10624536 - 10624480
Alignment:
Q  17 aggggtaattgaaattttattaatgtcag-agagtgattgacgaaacttacaatttc 72  Q
    ||||||||||||| |||| ||||| |||| ||||| || ||||||||||||||||||    
T  10624536 aggggtaattgaagttttgttaatttcaggagagtaatcgacgaaacttacaatttc 10624480  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 17 - 72
Target Start/End: Complemental strand, 23767035 - 23766979
Alignment:
Q  17 aggggtaattgaaattttattaatgtcaga-gagtgattgacgaaacttacaatttc 72  Q
    ||||||||||||| |||||||||| ||||| | || ||||| |||||||||||||||    
T  23767035 aggggtaattgaagttttattaatttcagaggggtaattgatgaaacttacaatttc 23766979  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 42; Significance: 0.00000000000002; HSPs: 15)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 15 - 76
Target Start/End: Original strand, 23678895 - 23678956
Alignment:
Q  15 aaaggggtaattgaaattttattaatgtcagagagtgattgacgaaacttacaatttcggag 76  Q
    ||||||||||||||| ||||||||| |||||||||| |||||||||||||| ||||| ||||    
T  23678895 aaaggggtaattgaagttttattaacgtcagagagtaattgacgaaacttataattttggag 23678956  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 16 - 90
Target Start/End: Complemental strand, 24212386 - 24212309
Alignment:
Q  16 aaggggtaattgaaattttattaatgtca-gagagtgattgacgaaacttacaatttc--ggagacaattggctattt 90  Q
    ||||||||||||||||||| ||||| ||| | | || |||||||||||||||||||||  ||||||||||| ||||||    
T  24212386 aaggggtaattgaaattttgttaatttcaagggggtaattgacgaaacttacaatttcagggagacaattgcctattt 24212309  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 17 - 75
Target Start/End: Original strand, 4237191 - 4237250
Alignment:
Q  17 aggggtaattgaaattttattaatgtca-gagagtgattgacgaaacttacaatttcgga 75  Q
    |||||||||||||||||| ||||| ||| |||| | |||||||||| |||||||||||||    
T  4237191 aggggtaattgaaattttgttaatttcaggagaataattgacgaaatttacaatttcgga 4237250  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 20 - 71
Target Start/End: Complemental strand, 31308314 - 31308264
Alignment:
Q  20 ggtaattgaaattttattaatgtcagagagtgattgacgaaacttacaattt 71  Q
    ||||||||||||||| |||||||||||| || |||||| |||||||||||||    
T  31308314 ggtaattgaaattttgttaatgtcagag-gtaattgacaaaacttacaattt 31308264  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 19 - 72
Target Start/End: Complemental strand, 30022534 - 30022480
Alignment:
Q  19 gggtaattgaaattttattaatgtcag-agagtgattgacgaaacttacaatttc 72  Q
    ||||||||||| |||| ||||| |||| ||||| |||||||||||||||||||||    
T  30022534 gggtaattgaagttttgttaatttcaggagagtaattgacgaaacttacaatttc 30022480  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 19 - 72
Target Start/End: Original strand, 30023275 - 30023329
Alignment:
Q  19 gggtaattgaaattttattaatgtcag-agagtgattgacgaaacttacaatttc 72  Q
    ||||||||||| |||| ||||| |||| ||||| |||||||||||||||||||||    
T  30023275 gggtaattgaagttttgttaatttcaggagagtaattgacgaaacttacaatttc 30023329  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 18 - 72
Target Start/End: Original strand, 36787434 - 36787488
Alignment:
Q  18 ggggtaattgaaattttattaatgtcagagagtgattgacgaaacttacaatttc 72  Q
    |||||||||||| |||| ||||| |||||| || ||||| |||||||||||||||    
T  36787434 ggggtaattgaagttttgttaatttcagagggtaattgatgaaacttacaatttc 36787488  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 18 - 72
Target Start/End: Original strand, 37711326 - 37711380
Alignment:
Q  18 ggggtaattgaaattttattaatgtcagagagtgattgacgaaacttacaatttc 72  Q
    |||||||||||| |||| ||||| || ||| || |||||||||||||||||||||    
T  37711326 ggggtaattgaagttttgttaatttcggagggtaattgacgaaacttacaatttc 37711380  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 20 - 76
Target Start/End: Original strand, 21387263 - 21387320
Alignment:
Q  20 ggtaattgaaattttattaatgtca-gagagtgattgacgaaacttacaatttcggag 76  Q
    |||||||||| |||| ||||| ||| ||| || |||||||||||||||||||||||||    
T  21387263 ggtaattgaagttttgttaatttcaagagggtaattgacgaaacttacaatttcggag 21387320  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 19 - 72
Target Start/End: Complemental strand, 28290085 - 28290032
Alignment:
Q  19 gggtaattgaaattttattaatgtcagagagtgattgacgaaacttacaatttc 72  Q
    ||||||||||| |||| ||||| |||| |||| ||||| |||||||||||||||    
T  28290085 gggtaattgaagttttgttaatttcagggagtaattgatgaaacttacaatttc 28290032  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 18 - 74
Target Start/End: Complemental strand, 12231085 - 12231029
Alignment:
Q  18 ggggtaattgaaattttattaatgtcagagagtgattgacgaaacttacaatttcgg 74  Q
    |||||||||||| |||| ||||| |||| | || ||||||||||| |||||||||||    
T  12231085 ggggtaattgaagttttgttaatttcagggggtaattgacgaaacctacaatttcgg 12231029  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 17 - 72
Target Start/End: Original strand, 17272581 - 17272637
Alignment:
Q  17 aggggtaattgaaattttattaatgtcagaga-gtgattgacgaaacttacaatttc 72  Q
    ||||||||||||| |||| ||||| ||||||| || ||||| |||||||||||||||    
T  17272581 aggggtaattgaagttttgttaatttcagagaggtaattgatgaaacttacaatttc 17272637  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 17 - 72
Target Start/End: Complemental strand, 26831607 - 26831551
Alignment:
Q  17 aggggtaattgaaattttattaatgtcagagag-tgattgacgaaacttacaatttc 72  Q
    ||||||||||||| |||||||||| ||| || | | |||||||||||||||||||||    
T  26831607 aggggtaattgaagttttattaatttcaaaggggtaattgacgaaacttacaatttc 26831551  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 17 - 72
Target Start/End: Original strand, 34959173 - 34959229
Alignment:
Q  17 aggggtaattgaaattttattaatgtcagagag-tgattgacgaaacttacaatttc 72  Q
    ||||||||||||| |||| ||||| |||| ||| | |||||||||||||||||||||    
T  34959173 aggggtaattgaagttttgttaatttcagggaggtaattgacgaaacttacaatttc 34959229  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 19 - 75
Target Start/End: Complemental strand, 42260759 - 42260703
Alignment:
Q  19 gggtaattgaaattttattaatgtcagagagtgattgacgaaacttacaatttcgga 75  Q
    ||||||||||| |||| ||||| |||| |  | ||||||||||||||||||||||||    
T  42260759 gggtaattgaagttttgttaatttcagtggataattgacgaaacttacaatttcgga 42260703  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 42; Significance: 0.00000000000002; HSPs: 15)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 19 - 72
Target Start/End: Original strand, 45149840 - 45149893
Alignment:
Q  19 gggtaattgaaattttattaatgtcagagagtgattgacgaaacttacaatttc 72  Q
    |||||||||||||||| ||||| ||||||||| |||||||||||||||||||||    
T  45149840 gggtaattgaaattttgttaatttcagagagtaattgacgaaacttacaatttc 45149893  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 18 - 71
Target Start/End: Complemental strand, 34921231 - 34921178
Alignment:
Q  18 ggggtaattgaaattttattaatgtcagagagtgattgacgaaacttacaattt 71  Q
    ||||||||||||||||| ||||| |||  |||| ||||||||||||||||||||    
T  34921231 ggggtaattgaaattttgttaatttcaaggagtaattgacgaaacttacaattt 34921178  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 21 - 73
Target Start/End: Complemental strand, 51313342 - 51313290
Alignment:
Q  21 gtaattgaaattttattaatgtcagagagtgattgacgaaacttacaatttcg 73  Q
    |||||||||||||| ||||| |||||| || ||| ||||||||||||||||||    
T  51313342 gtaattgaaattttgttaatatcagagggtaattaacgaaacttacaatttcg 51313290  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 18 - 72
Target Start/End: Original strand, 1033849 - 1033903
Alignment:
Q  18 ggggtaattgaaattttattaatgtcagagagtgattgacgaaacttacaatttc 72  Q
    |||||||||||| |||| ||||| |||| | || |||||||||||||||||||||    
T  1033849 ggggtaattgaagttttgttaatatcagggggtaattgacgaaacttacaatttc 1033903  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 18 - 72
Target Start/End: Original strand, 20411236 - 20411290
Alignment:
Q  18 ggggtaattgaaattttattaatgtcagagagtgattgacgaaacttacaatttc 72  Q
    |||||||||||| |||| ||||| ||||||| | |||||||||||||| ||||||    
T  20411236 ggggtaattgaagttttgttaatttcagagaataattgacgaaacttataatttc 20411290  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 18 - 72
Target Start/End: Complemental strand, 24814152 - 24814098
Alignment:
Q  18 ggggtaattgaaattttattaatgtcagagagtgattgacgaaacttacaatttc 72  Q
    |||||||||||| |||| ||||| |||||| || ||||| |||||||||||||||    
T  24814152 ggggtaattgaagttttgttaatttcagagggtaattgatgaaacttacaatttc 24814098  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 18 - 72
Target Start/End: Original strand, 25360349 - 25360402
Alignment:
Q  18 ggggtaattgaaattttattaatgtcagagagtgattgacgaaacttacaatttc 72  Q
    |||||||||||| |||| ||||| |||||| || |||||||||||||||||||||    
T  25360349 ggggtaattgaagttttgttaatttcagag-gtaattgacgaaacttacaatttc 25360402  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 14 - 71
Target Start/End: Complemental strand, 25555547 - 25555489
Alignment:
Q  14 caaaggggtaattgaaattttattaatgtcag-agagtgattgacgaaacttacaattt 71  Q
    ||||| ||||||||||||||| ||||| |||| || || ||||||||||||||||||||    
T  25555547 caaagaggtaattgaaattttgttaatttcagaagggtaattgacgaaacttacaattt 25555489  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 18 - 72
Target Start/End: Original strand, 34503652 - 34503706
Alignment:
Q  18 ggggtaattgaaattttattaatgtcagagagtgattgacgaaacttacaatttc 72  Q
    |||||||||||| |||| ||||| |||| |||| |||||||||||||| ||||||    
T  34503652 ggggtaattgaagttttgttaatttcagggagtaattgacgaaacttaaaatttc 34503706  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 18 - 72
Target Start/End: Original strand, 41222695 - 41222749
Alignment:
Q  18 ggggtaattgaaattttattaatgtcagagagtgattgacgaaacttacaatttc 72  Q
    |||||||||||| |||| ||||| ||||||||| ||| | |||||||||||||||    
T  41222695 ggggtaattgaagttttgttaatttcagagagtaattaatgaaacttacaatttc 41222749  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 18 - 72
Target Start/End: Original strand, 44519051 - 44519105
Alignment:
Q  18 ggggtaattgaaattttattaatgtcagagagtgattgacgaaacttacaatttc 72  Q
    |||||||||||| |||| ||||| |||||| || ||||| |||||||||||||||    
T  44519051 ggggtaattgaagttttgttaatttcagagggtaattgatgaaacttacaatttc 44519105  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 19 - 72
Target Start/End: Original strand, 24828290 - 24828343
Alignment:
Q  19 gggtaattgaaattttattaatgtcagagagtgattgacgaaacttacaatttc 72  Q
    ||||||||||| |||| ||||| |||| |||| ||||| |||||||||||||||    
T  24828290 gggtaattgaagttttgttaatttcagggagtaattgatgaaacttacaatttc 24828343  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 18 - 74
Target Start/End: Original strand, 36951923 - 36951980
Alignment:
Q  18 ggggtaattgaaattttattaatgtcagagag-tgattgacgaaacttacaatttcgg 74  Q
    |||||||||||| |||| ||||| |||||| | | |||||||||||||||||||||||    
T  36951923 ggggtaattgaagttttgttaatttcagagggataattgacgaaacttacaatttcgg 36951980  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 28 - 77
Target Start/End: Original strand, 47731859 - 47731908
Alignment:
Q  28 aaattttattaatgtcagagagtgattgacgaaacttacaatttcggaga 77  Q
    ||||||||||||| ||||   || ||||||||||||||||||||||||||    
T  47731859 aaattttattaatttcaggaggtaattgacgaaacttacaatttcggaga 47731908  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 22 - 71
Target Start/End: Original strand, 55482385 - 55482434
Alignment:
Q  22 taattgaaattttattaatgtcagagagtgattgacgaaacttacaattt 71  Q
    |||||||| |||| ||||| |||||| || ||||||||||||||||||||    
T  55482385 taattgaagttttgttaatttcagagggtaattgacgaaacttacaattt 55482434  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 37; Significance: 0.00000000002; HSPs: 15)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 16 - 72
Target Start/End: Original strand, 5790542 - 5790598
Alignment:
Q  16 aaggggtaattgaaattttattaatgtcagagagtgattgacgaaacttacaatttc 72  Q
    |||||||||||||| |||| ||||| |||| |||| |||||||||||||||||||||    
T  5790542 aaggggtaattgaagttttgttaatttcagggagtaattgacgaaacttacaatttc 5790598  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 18 - 72
Target Start/End: Complemental strand, 5574041 - 5573987
Alignment:
Q  18 ggggtaattgaaattttattaatgtcagagagtgattgacgaaacttacaatttc 72  Q
    |||||||||||| |||||||||| |||| | || |||||||||||||||||||||    
T  5574041 ggggtaattgaagttttattaatttcagggggtaattgacgaaacttacaatttc 5573987  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 22 - 83
Target Start/End: Complemental strand, 42546265 - 42546204
Alignment:
Q  22 taattgaaattttattaatgtcagagagtgattgacgaaacttacaatttcggagacaattg 83  Q
    ||||||||||||| ||||| |||  | || |||||||||||||||||||||||||| |||||    
T  42546265 taattgaaattttgttaatatcaatgggtaattgacgaaacttacaatttcggagataattg 42546204  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 17 - 72
Target Start/End: Complemental strand, 6834562 - 6834507
Alignment:
Q  17 aggggtaattgaaattttattaatgtcagagagtgattgacgaaacttacaatttc 72  Q
    |||||||||||||||||| |||||||||| |  | |||||||||||||| ||||||    
T  6834562 aggggtaattgaaattttgttaatgtcaggggataattgacgaaacttataatttc 6834507  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 18 - 72
Target Start/End: Complemental strand, 41411876 - 41411821
Alignment:
Q  18 ggggtaattgaaattttattaatgtcagaga-gtgattgacgaaacttacaatttc 72  Q
    ||||||||||||||||| ||||| ||||||| || ||||| |||||||||||||||    
T  41411876 ggggtaattgaaattttgttaatttcagagaggtaattgatgaaacttacaatttc 41411821  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 18 - 72
Target Start/End: Original strand, 5382426 - 5382480
Alignment:
Q  18 ggggtaattgaaattttattaatgtcagagagtgattgacgaaacttacaatttc 72  Q
    |||||||||||| |||| ||||| |||| | || |||||||||||||||||||||    
T  5382426 ggggtaattgaagttttgttaatttcagggggtaattgacgaaacttacaatttc 5382480  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 17 - 71
Target Start/End: Original strand, 6809510 - 6809564
Alignment:
Q  17 aggggtaattgaaattttattaatgtcagagagtgattgacgaaacttacaattt 71  Q
    ||||||||||||| |||| |||||||||  | || ||||||||||||||||||||    
T  6809510 aggggtaattgaagttttgttaatgtcatggggtaattgacgaaacttacaattt 6809564  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 18 - 72
Target Start/End: Complemental strand, 11157024 - 11156970
Alignment:
Q  18 ggggtaattgaaattttattaatgtcagagagtgattgacgaaacttacaatttc 72  Q
    |||||||||||| |||| |||||||||| | || ||||||||||||| |||||||    
T  11157024 ggggtaattgaagttttgttaatgtcagggggtaattgacgaaacttgcaatttc 11156970  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 21 - 71
Target Start/End: Complemental strand, 21085818 - 21085768
Alignment:
Q  21 gtaattgaaattttattaatgtcagagagtgattgacgaaacttacaattt 71  Q
    ||||||||| |||| ||||||||| || || ||||||||||||||||||||    
T  21085818 gtaattgaagttttgttaatgtcatagggtaattgacgaaacttacaattt 21085768  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 18 - 72
Target Start/End: Original strand, 27188756 - 27188810
Alignment:
Q  18 ggggtaattgaaattttattaatgtcagagagtgattgacgaaacttacaatttc 72  Q
    |||||||||||| |||| ||||| |||| | || |||||||||||||||||||||    
T  27188756 ggggtaattgaagttttgttaatttcagggggtaattgacgaaacttacaatttc 27188810  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 18 - 72
Target Start/End: Original strand, 36811594 - 36811648
Alignment:
Q  18 ggggtaattgaaattttattaatgtcagagagtgattgacgaaacttacaatttc 72  Q
    |||||||||||| |||| ||||| |||| |||| ||||| |||||||||||||||    
T  36811594 ggggtaattgaagttttgttaatttcagggagtaattgatgaaacttacaatttc 36811648  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 18 - 72
Target Start/End: Original strand, 42341923 - 42341977
Alignment:
Q  18 ggggtaattgaaattttattaatgtcagagagtgattgacgaaacttacaatttc 72  Q
    |||||||||||| |||| ||||| |||||| || ||||| |||||||||||||||    
T  42341923 ggggtaattgaagttttgttaatttcagagggtaattgatgaaacttacaatttc 42341977  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 18 - 71
Target Start/End: Complemental strand, 3976161 - 3976108
Alignment:
Q  18 ggggtaattgaaattttattaatgtcagagagtgattgacgaaacttacaattt 71  Q
    |||||||||||| |||| |||||||||| | || |||||| |||||||||||||    
T  3976161 ggggtaattgaagttttgttaatgtcagtgggtaattgactaaacttacaattt 3976108  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 19 - 72
Target Start/End: Original strand, 21362537 - 21362590
Alignment:
Q  19 gggtaattgaaattttattaatgtcagagagtgattgacgaaacttacaatttc 72  Q
    ||||||||||| |||| |||||||||  | || |||||||||||||||||||||    
T  21362537 gggtaattgaagttttgttaatgtcatggggtaattgacgaaacttacaatttc 21362590  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 18 - 73
Target Start/End: Original strand, 4104990 - 4105046
Alignment:
Q  18 ggggtaattgaaattttattaatgtcagagag-tgattgacgaaacttacaatttcg 73  Q
    ||||||||||||||||| ||||| |||||  | | ||||||||||||||||||||||    
T  4104990 ggggtaattgaaattttgttaatttcagaaggataattgacgaaacttacaatttcg 4105046  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0004 (Bit Score: 36; Significance: 0.00000000007; HSPs: 1)
Name: scaffold0004
Description:

Target: scaffold0004; HSP #1
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 18 - 72
Target Start/End: Original strand, 38229 - 38284
Alignment:
Q  18 ggggtaattgaaattttattaatgtcagagag-tgattgacgaaacttacaatttc 72  Q
    ||||||||||||||||| ||||| |||||||| | |||||||||||||||||||||    
T  38229 ggggtaattgaaattttgttaatatcagagagataattgacgaaacttacaatttc 38284  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 36; Significance: 0.00000000007; HSPs: 14)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 17 - 72
Target Start/End: Complemental strand, 37746376 - 37746321
Alignment:
Q  17 aggggtaattgaaattttattaatgtcagagagtgattgacgaaacttacaatttc 72  Q
    ||||||||||||| |||| ||||| ||||||||| ||||| |||||||||||||||    
T  37746376 aggggtaattgaagttttcttaatttcagagagtaattgatgaaacttacaatttc 37746321  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 20 - 72
Target Start/End: Original strand, 11180007 - 11180059
Alignment:
Q  20 ggtaattgaaattttattaatgtcagagagtgattgacgaaacttacaatttc 72  Q
    |||||||||| |||| ||||| |||| |||| |||||||||||||||||||||    
T  11180007 ggtaattgaagttttgttaatttcagggagtaattgacgaaacttacaatttc 11180059  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 18 - 74
Target Start/End: Original strand, 38257177 - 38257233
Alignment:
Q  18 ggggtaattgaaattttattaatgtcagagagtgattgacgaaacttacaatttcgg 74  Q
    |||||||||||| |||| ||||| |||||  || |||||||||||||||||||||||    
T  38257177 ggggtaattgaagttttgttaatttcagaaggtaattgacgaaacttacaatttcgg 38257233  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 21 - 72
Target Start/End: Original strand, 6743633 - 6743684
Alignment:
Q  21 gtaattgaaattttattaatgtcagagagtgattgacgaaacttacaatttc 72  Q
    |||||||||||||| ||||| ||||  ||| |||||||||||||||||||||    
T  6743633 gtaattgaaattttgttaatatcaggaagtaattgacgaaacttacaatttc 6743684  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 18 - 72
Target Start/End: Original strand, 12765112 - 12765167
Alignment:
Q  18 ggggtaattgaaattttattaatgtcagag-agtgattgacgaaacttacaatttc 72  Q
    |||||||||||| |||| ||||| |||||| ||| |||||||||||||||||||||    
T  12765112 ggggtaattgaagttttgttaatttcagaggagtaattgacgaaacttacaatttc 12765167  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 18 - 72
Target Start/End: Original strand, 15602087 - 15602142
Alignment:
Q  18 ggggtaattgaaattttattaatgtcaga-gagtgattgacgaaacttacaatttc 72  Q
    ||||||||||||||||| ||||| ||||| | || |||||||||||||||||||||    
T  15602087 ggggtaattgaaattttgttaatttcagaggggtaattgacgaaacttacaatttc 15602142  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 19 - 72
Target Start/End: Original strand, 26431598 - 26431652
Alignment:
Q  19 gggtaattgaaattttattaatgtcagagag-tgattgacgaaacttacaatttc 72  Q
    |||||||||||||||| ||||| ||| |||| | |||||||||||||||||||||    
T  26431598 gggtaattgaaattttgttaatttcaaagagataattgacgaaacttacaatttc 26431652  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 21 - 71
Target Start/End: Complemental strand, 32449017 - 32448967
Alignment:
Q  21 gtaattgaaattttattaatgtcagagagtgattgacgaaacttacaattt 71  Q
    ||||||||| |||| ||||| ||||||| | ||||||||||||||||||||    
T  32449017 gtaattgaagttttgttaatttcagagaataattgacgaaacttacaattt 32448967  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 18 - 83
Target Start/End: Complemental strand, 39863426 - 39863361
Alignment:
Q  18 ggggtaattgaaattttattaatgtcagagagtgattgacgaaacttacaatttcggagacaattg 83  Q
    |||||||||||| |||| ||||| ||| |  || ||||||||||||||||||||| |||| |||||    
T  39863426 ggggtaattgaagttttgttaatttcaaaaggtaattgacgaaacttacaatttcagagaaaattg 39863361  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 17 - 72
Target Start/End: Original strand, 9116263 - 9116319
Alignment:
Q  17 aggggtaattgaaattttattaatgtcaga-gagtgattgacgaaacttacaatttc 72  Q
    ||||||||||||| |||| ||||| ||||| |||| ||||| |||||||||||||||    
T  9116263 aggggtaattgaagttttgttaatttcagaagagtaattgatgaaacttacaatttc 9116319  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 20 - 72
Target Start/End: Complemental strand, 27071653 - 27071602
Alignment:
Q  20 ggtaattgaaattttattaatgtcagagagtgattgacgaaacttacaatttc 72  Q
    ||||||||||||||| ||||| ||||||| | |||||||||||||| ||||||    
T  27071653 ggtaattgaaattttgttaatttcagaga-taattgacgaaacttataatttc 27071602  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 21 - 77
Target Start/End: Original strand, 41450470 - 41450525
Alignment:
Q  21 gtaattgaaattttattaatgtcagagagtgattgacgaaacttacaatttcggaga 77  Q
    |||||| ||||||| |||||||||| | || ||||||||||||||| ||||||||||    
T  41450470 gtaattaaaattttgttaatgtcagtg-gtaattgacgaaacttacgatttcggaga 41450525  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 17 - 72
Target Start/End: Complemental strand, 44458656 - 44458600
Alignment:
Q  17 aggggtaattgaaattttattaatgtcagagag-tgattgacgaaacttacaatttc 72  Q
    ||||||||||||| |||| |||||||||| | | | |||||||||||||||||||||    
T  44458656 aggggtaattgaagttttgttaatgtcaggggggtaattgacgaaacttacaatttc 44458600  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 17 - 72
Target Start/End: Complemental strand, 44466189 - 44466133
Alignment:
Q  17 aggggtaattgaaattttattaatgtcagagag-tgattgacgaaacttacaatttc 72  Q
    ||||||||||||| |||| |||||||||| | | | |||||||||||||||||||||    
T  44466189 aggggtaattgaagttttgttaatgtcaggggggtaattgacgaaacttacaatttc 44466133  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 36; Significance: 0.00000000007; HSPs: 9)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 17 - 72
Target Start/End: Original strand, 6731423 - 6731478
Alignment:
Q  17 aggggtaattgaaattttattaatgtcagagagtgattgacgaaacttacaatttc 72  Q
    ||||||||||||| |||| |||||||||||  || |||||||||||||||||||||    
T  6731423 aggggtaattgaagttttgttaatgtcagaaggtaattgacgaaacttacaatttc 6731478  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 18 - 72
Target Start/End: Complemental strand, 18736713 - 18736659
Alignment:
Q  18 ggggtaattgaaattttattaatgtcagagagtgattgacgaaacttacaatttc 72  Q
    ||||||||||||||||| ||||| ||||||  | |||||||||||||||||||||    
T  18736713 ggggtaattgaaattttgttaatttcagaggataattgacgaaacttacaatttc 18736659  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 18 - 72
Target Start/End: Original strand, 44748007 - 44748062
Alignment:
Q  18 ggggtaattgaaattttattaatgtcagag-agtgattgacgaaacttacaatttc 72  Q
    |||||||||||| |||| ||||| |||||| ||| |||||||||||||||||||||    
T  44748007 ggggtaattgaagttttgttaatttcagaggagtaattgacgaaacttacaatttc 44748062  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 18 - 72
Target Start/End: Original strand, 17540403 - 17540457
Alignment:
Q  18 ggggtaattgaaattttattaatgtcagagagtgattgacgaaacttacaatttc 72  Q
    |||||||||||| |||| ||||| |||||| || ||||||||||| |||||||||    
T  17540403 ggggtaattgaagttttgttaatttcagagggtaattgacgaaacctacaatttc 17540457  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 18 - 72
Target Start/End: Complemental strand, 28149940 - 28149886
Alignment:
Q  18 ggggtaattgaaattttattaatgtcagagagtgattgacgaaacttacaatttc 72  Q
    ||||||||||||||||| ||||| |||| | || ||||||||||| |||||||||    
T  28149940 ggggtaattgaaattttgttaatttcagggggtaattgacgaaacctacaatttc 28149886  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 22 - 72
Target Start/End: Original strand, 45160372 - 45160422
Alignment:
Q  22 taattgaaattttattaatgtcagagagtgattgacgaaacttacaatttc 72  Q
    |||||||| |||||||||| || | |||| |||||||||||||||||||||    
T  45160372 taattgaagttttattaatttcggggagtaattgacgaaacttacaatttc 45160422  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 21 - 74
Target Start/End: Original strand, 135968 - 136021
Alignment:
Q  21 gtaattgaaattttattaatgtcagagagtgattgacgaaacttacaatttcgg 74  Q
    |||||||||||||| ||||||| | || || |||||||||| ||||||||||||    
T  135968 gtaattgaaattttgttaatgttatagggtaattgacgaaagttacaatttcgg 136021  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 20 - 72
Target Start/End: Original strand, 7275650 - 7275702
Alignment:
Q  20 ggtaattgaaattttattaatgtcagagagtgattgacgaaacttacaatttc 72  Q
    |||||||||| |||| ||||||||||||  | ||||||||||||| |||||||    
T  7275650 ggtaattgaagttttgttaatgtcagaggataattgacgaaacttccaatttc 7275702  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 16 - 72
Target Start/End: Complemental strand, 39939355 - 39939299
Alignment:
Q  16 aaggggtaattgaaattttattaatgtcagagagtgattgacgaaacttacaatttc 72  Q
    |||||||||||||| |||| |||||||||| |  | |||||| ||||||||||||||    
T  39939355 aaggggtaattgaagttttgttaatgtcaggggataattgacaaaacttacaatttc 39939299  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 36; Significance: 0.00000000007; HSPs: 13)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 17 - 72
Target Start/End: Complemental strand, 38064839 - 38064784
Alignment:
Q  17 aggggtaattgaaattttattaatgtcagagagtgattgacgaaacttacaatttc 72  Q
    ||||||||||||| |||||||||||| | || || |||||||||||||||||||||    
T  38064839 aggggtaattgaagttttattaatgttatagggtaattgacgaaacttacaatttc 38064784  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 22 - 72
Target Start/End: Complemental strand, 17825898 - 17825848
Alignment:
Q  22 taattgaaattttattaatgtcagagagtgattgacgaaacttacaatttc 72  Q
    ||||||||||||| |||||| |||||| | |||||||||||||||||||||    
T  17825898 taattgaaattttgttaatgccagagattaattgacgaaacttacaatttc 17825848  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 18 - 72
Target Start/End: Complemental strand, 30634374 - 30634320
Alignment:
Q  18 ggggtaattgaaattttattaatgtcagagagtgattgacgaaacttacaatttc 72  Q
    |||||||||||| |||| ||||| |||||| || |||||||||||||||||||||    
T  30634374 ggggtaattgaagttttgttaatttcagagggtaattgacgaaacttacaatttc 30634320  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 18 - 72
Target Start/End: Complemental strand, 32186142 - 32186088
Alignment:
Q  18 ggggtaattgaaattttattaatgtcagagagtgattgacgaaacttacaatttc 72  Q
    ||||||||||||||||| ||||| |||||| || ||||| |||||||||||||||    
T  32186142 ggggtaattgaaattttgttaatttcagagggtaattgatgaaacttacaatttc 32186088  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 18 - 72
Target Start/End: Original strand, 32537230 - 32537284
Alignment:
Q  18 ggggtaattgaaattttattaatgtcagagagtgattgacgaaacttacaatttc 72  Q
    |||||||||||| |||||||||| |||| | || |||||||||||||||||||||    
T  32537230 ggggtaattgaagttttattaatttcagggggtaattgacgaaacttacaatttc 32537284  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 18 - 72
Target Start/End: Complemental strand, 48751622 - 48751568
Alignment:
Q  18 ggggtaattgaaattttattaatgtcagagagtgattgacgaaacttacaatttc 72  Q
    |||||||||||| |||| |||||||||| | ||||||||| ||||||||||||||    
T  48751622 ggggtaattgaagttttgttaatgtcagtgtgtgattgacaaaacttacaatttc 48751568  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 19 - 74
Target Start/End: Complemental strand, 22775517 - 22775461
Alignment:
Q  19 gggtaattgaaattttattaatgtcagag-agtgattgacgaaacttacaatttcgg 74  Q
    |||||||||||||||| ||||| |||||| ||| ||||| |||||||||||||||||    
T  22775517 gggtaattgaaattttgttaatttcagagaagtaattgatgaaacttacaatttcgg 22775461  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 18 - 76
Target Start/End: Complemental strand, 45216829 - 45216770
Alignment:
Q  18 ggggtaattgaaattttattaatgtcag-agagtgattgacgaaacttacaatttcggag 76  Q
    |||||||||||| |||| ||||| |||| || || |||||||||||||||||||||||||    
T  45216829 ggggtaattgaagttttgttaatttcaggagggtaattgacgaaacttacaatttcggag 45216770  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 18 - 72
Target Start/End: Complemental strand, 16834443 - 16834389
Alignment:
Q  18 ggggtaattgaaattttattaatgtcagagagtgattgacgaaacttacaatttc 72  Q
    |||||||||||| |||| ||||| |||| | || |||||||||||||||||||||    
T  16834443 ggggtaattgaagttttgttaatttcagggggtaattgacgaaacttacaatttc 16834389  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 18 - 72
Target Start/End: Complemental strand, 36723362 - 36723308
Alignment:
Q  18 ggggtaattgaaattttattaatgtcagagagtgattgacgaaacttacaatttc 72  Q
    ||||||||||||||||| ||||| |||  | || |||||||||||||||||||||    
T  36723362 ggggtaattgaaattttgttaatttcaaggggtaattgacgaaacttacaatttc 36723308  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 18 - 71
Target Start/End: Original strand, 18542295 - 18542348
Alignment:
Q  18 ggggtaattgaaattttattaatgtcagagagtgattgacgaaacttacaattt 71  Q
    ||||||||| || |||| |||||||||| | || ||||||||||||||||||||    
T  18542295 ggggtaattaaagttttgttaatgtcagggggtaattgacgaaacttacaattt 18542348  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 19 - 72
Target Start/End: Original strand, 26615828 - 26615881
Alignment:
Q  19 gggtaattgaaattttattaatgtcagagagtgattgacgaaacttacaatttc 72  Q
    ||||||||||| |||| ||||||||||||  | ||| |||||||||||||||||    
T  26615828 gggtaattgaagttttgttaatgtcagaggataattcacgaaacttacaatttc 26615881  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 21 - 72
Target Start/End: Original strand, 30754013 - 30754065
Alignment:
Q  21 gtaattgaaattttattaatgtca-gagagtgattgacgaaacttacaatttc 72  Q
    ||||||||| |||||||||| ||| | |||| |||||||||||||||||||||    
T  30754013 gtaattgaagttttattaatttcatgggagtaattgacgaaacttacaatttc 30754065  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0140 (Bit Score: 31; Significance: 0.00000006; HSPs: 1)
Name: scaffold0140
Description:

Target: scaffold0140; HSP #1
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 14 - 71
Target Start/End: Complemental strand, 4452 - 4394
Alignment:
Q  14 caaaggggtaattgaaattttattaatgtc-agagagtgattgacgaaacttacaattt 71  Q
    |||||||||||||||| |||||||||| || ||||  | ||||||||||||||||||||    
T  4452 caaaggggtaattgaagttttattaatttcaagaggataattgacgaaacttacaattt 4394  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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