View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF16676_high_31 (Length: 268)
Name: NF16676_high_31
Description: NF16676
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16676_high_31 |
 | |
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| [»] scaffold0074 (1 HSPs) |
| | |
|
| [»] scaffold0007 (1 HSPs) |
| | |
|
| [»] scaffold0264 (1 HSPs) |
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Alignment Details
Target: scaffold0074 (Bit Score: 235; Significance: 1e-130; HSPs: 1)
Name: scaffold0074
Description:
Target: scaffold0074; HSP #1
Raw Score: 235; E-Value: 1e-130
Query Start/End: Original strand, 15 - 249
Target Start/End: Complemental strand, 48112 - 47878
Alignment:
| Q |
15 |
cacagaggcgaacgggaaggtcacctcgacacatgaagaggccatacagcatttcttccactttaacagtatgggatttttcgccatttgtggcgttgga |
114 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
48112 |
cacagaggcgaacgggaaggtcacctcgacacatgaagaggccatacagcatttcttccactttaacagtatgggatttttcgccatttgtggcgttgga |
48013 |
T |
|
| Q |
115 |
ggacaaataagagagaagtaatttgaagtttttcttagtgattgtactgtggtttcttgggcaattataggaaagataaattggatcttgtgaaaatcta |
214 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
48012 |
ggacaaataagagagaagtaatttgaagtttttcttagtgattgtactgtggtttcttgggcaattataggaaagataaattggatcttgtgaaaatcta |
47913 |
T |
|
| Q |
215 |
gaatcttgttttgaatgttttgtttgaggaacaag |
249 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| |
|
|
| T |
47912 |
gaatcttgttttgaatgttttgtttgaggaacaag |
47878 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0007 (Bit Score: 198; Significance: 1e-108; HSPs: 1)
Name: scaffold0007
Description:
Target: scaffold0007; HSP #1
Raw Score: 198; E-Value: 1e-108
Query Start/End: Original strand, 12 - 249
Target Start/End: Complemental strand, 5642 - 5405
Alignment:
| Q |
12 |
gagcacagaggcgaacgggaaggtcacctcgacacatgaagaggccatacagcatttcttccactttaacagtatgggatttttcgccatttgtggcgtt |
111 |
Q |
| |
|
||||||||||| ||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
5642 |
gagcacagaggtgaacgggaaggtcacctcgacacatgaagaggccatacagcgtttcttccactttaacagtatgggatttttcgccatttgtggcgtt |
5543 |
T |
|
| Q |
112 |
ggaggacaaataagagagaagtaatttgaagtttttcttagtgattgtactgtggtttcttgggcaattataggaaagataaattggatcttgtgaaaat |
211 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |||||||||||||||||||| ||||||| ||||||| |
|
|
| T |
5542 |
ggaggacaaataagagagaagtaatttgaagtttttcttagtgattgtactttggtttcttgagcaattataggaaagataaaagggatcttttgaaaat |
5443 |
T |
|
| Q |
212 |
ctagaatcttgttttgaatgttttgtttgaggaacaag |
249 |
Q |
| |
|
|||| |||||||||||||| ||||||||||||||||| |
|
|
| T |
5442 |
ctagtatcttgttttgaatagtttgtttgaggaacaag |
5405 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 175; Significance: 3e-94; HSPs: 8)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 175; E-Value: 3e-94
Query Start/End: Original strand, 15 - 249
Target Start/End: Original strand, 20085877 - 20086111
Alignment:
| Q |
15 |
cacagaggcgaacgggaaggtcacctcgacacatgaagaggccatacagcatttcttccactttaacagtatgggatttttcgccatttgtggcgttgga |
114 |
Q |
| |
|
||||||||||||| ||||||||||||||||||| ||||||||| |||| |||||| |||||||||||||||| ||||||||||||||||||||||||| |
|
|
| T |
20085877 |
cacagaggcgaacaggaaggtcacctcgacacaagaagaggccgtacaccatttcatccactttaacagtataaaatttttcgccatttgtggcgttgga |
20085976 |
T |
|
| Q |
115 |
ggacaaataagagagaagtaatttgaagtttttcttagtgattgtactgtggtttcttgggcaattataggaaagataaattggatcttgtgaaaatcta |
214 |
Q |
| |
|
||||| |||||||||||||||||||||||| || |||||||||||||||| |||||||| |||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
20085977 |
ggacagataagagagaagtaatttgaagttattgttagtgattgtactgttgtttcttgagcaattataggaaagataaattggatcttgtgaaaatcta |
20086076 |
T |
|
| Q |
215 |
gaatcttgttttgaatgttttgtttgaggaacaag |
249 |
Q |
| |
|
|||||||| |||||||| ||||||||||||||||| |
|
|
| T |
20086077 |
gaatcttggtttgaatgatttgtttgaggaacaag |
20086111 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 167; E-Value: 2e-89
Query Start/End: Original strand, 15 - 249
Target Start/End: Complemental strand, 24385498 - 24385264
Alignment:
| Q |
15 |
cacagaggcgaacgggaaggtcacctcgacacatgaagaggccatacagcatttcttccactttaacagtatgggatttttcgccatttgtggcgttgga |
114 |
Q |
| |
|
||||||| ||||||||||||||||||||||||||||||||||| |||| ||||||||||||||| ||||||| | |||||| |||||||||||||||||| |
|
|
| T |
24385498 |
cacagagacgaacgggaaggtcacctcgacacatgaagaggccgtacaccatttcttccacttttacagtatagaattttttgccatttgtggcgttgga |
24385399 |
T |
|
| Q |
115 |
ggacaaataagagagaagtaatttgaagtttttcttagtgattgtactgtggtttcttgggcaattataggaaagataaattggatcttgtgaaaatcta |
214 |
Q |
| |
|
||||| |||||||||||||||||||||||| | || |||||| || |||||||||||| |||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
24385398 |
ggacagataagagagaagtaatttgaagttatcgtttgtgattatattgtggtttcttgagcaattataggaaagataaattggatcttgtgaaaatcta |
24385299 |
T |
|
| Q |
215 |
gaatcttgttttgaatgttttgtttgaggaacaag |
249 |
Q |
| |
|
|||||||||||||||| ||||||||||||||||| |
|
|
| T |
24385298 |
gaatcttgttttgaatcatttgtttgaggaacaag |
24385264 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 165; E-Value: 3e-88
Query Start/End: Original strand, 17 - 249
Target Start/End: Complemental strand, 22205284 - 22205052
Alignment:
| Q |
17 |
cagaggcgaacgggaaggtcacctcgacacatgaagaggccatacagcatttcttccactttaacagtatgggatttttcgccatttgtggcgttggagg |
116 |
Q |
| |
|
|||||| |||||||||||||||||||||||||||||||||| |||| ||||||||||||||| || | ||| | ||| ||||||||||||||||||||| |
|
|
| T |
22205284 |
cagaggtgaacgggaaggtcacctcgacacatgaagaggccgtacaccatttcttccacttttactttttggaaatttccgccatttgtggcgttggagg |
22205185 |
T |
|
| Q |
117 |
acaaataagagagaagtaatttgaagtttttcttagtgattgtactgtggtttcttgggcaattataggaaagataaattggatcttgtgaaaatctaga |
216 |
Q |
| |
|
||||||||||||||||||||||||||||||| ||||||||| ||||||||||||||| |||||||||||||||||||| ||||||||||||||||||||| |
|
|
| T |
22205184 |
acaaataagagagaagtaatttgaagtttttgttagtgattttactgtggtttcttgagcaattataggaaagataaaatggatcttgtgaaaatctaga |
22205085 |
T |
|
| Q |
217 |
atcttgttttgaatgttttgtttgaggaacaag |
249 |
Q |
| |
|
|||||| ||||||| ||||||||||||||||| |
|
|
| T |
22205084 |
atcttgggttgaatgatttgtttgaggaacaag |
22205052 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 147; E-Value: 1e-77
Query Start/End: Original strand, 15 - 249
Target Start/End: Original strand, 20237790 - 20238024
Alignment:
| Q |
15 |
cacagaggcgaacgggaaggtcacctcgacacatgaagaggccatacagcatttcttccactttaacagtatgggatttttcgccatttgtggcgttgga |
114 |
Q |
| |
|
||||||||||| ||||||||||||||||||| ||||||||| |||| | |||||||||||||| || ||||| || || |||||||||||||||||| |
|
|
| T |
20237790 |
cacagaggcgattaggaaggtcacctcgacacaagaagaggccgtacaccttttcttccactttagcaatatggaatgttgtgccatttgtggcgttgga |
20237889 |
T |
|
| Q |
115 |
ggacaaataagagagaagtaatttgaagtttttcttagtgattgtactgtggtttcttgggcaattataggaaagataaattggatcttgtgaaaatcta |
214 |
Q |
| |
|
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| ||||||||||| ||||||||||| ||| || |
|
|
| T |
20237890 |
agacaaataagagagaagtaatttgaagtttttgttagtgattgtactgtggtttcttgggcaattatcggaaagataaactggatcttgtgtaaaatta |
20237989 |
T |
|
| Q |
215 |
gaatcttgttttgaatgttttgtttgaggaacaag |
249 |
Q |
| |
|
|||||||||||||||| ||||||||||||||||| |
|
|
| T |
20237990 |
gaatcttgttttgaatcatttgtttgaggaacaag |
20238024 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 147; E-Value: 1e-77
Query Start/End: Original strand, 15 - 249
Target Start/End: Original strand, 22131774 - 22132008
Alignment:
| Q |
15 |
cacagaggcgaacgggaaggtcacctcgacacatgaagaggccatacagcatttcttccactttaacagtatgggatttttcgccatttgtggcgttgga |
114 |
Q |
| |
|
||||||||||| ||||||||||||||||||| ||||||||| |||| | |||||||||||||| || ||||| || || |||||||||||||||||| |
|
|
| T |
22131774 |
cacagaggcgattaggaaggtcacctcgacacaagaagaggccgtacaccttttcttccactttagcaatatggaatgttgtgccatttgtggcgttgga |
22131873 |
T |
|
| Q |
115 |
ggacaaataagagagaagtaatttgaagtttttcttagtgattgtactgtggtttcttgggcaattataggaaagataaattggatcttgtgaaaatcta |
214 |
Q |
| |
|
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| ||||||||||| ||||||||||| ||| || |
|
|
| T |
22131874 |
agacaaataagagagaagtaatttgaagtttttgttagtgattgtactgtggtttcttgggcaattatcggaaagataaactggatcttgtgtaaaatta |
22131973 |
T |
|
| Q |
215 |
gaatcttgttttgaatgttttgtttgaggaacaag |
249 |
Q |
| |
|
|||||||||||||||| ||||||||||||||||| |
|
|
| T |
22131974 |
gaatcttgttttgaatcatttgtttgaggaacaag |
22132008 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #6
Raw Score: 84; E-Value: 5e-40
Query Start/End: Original strand, 29 - 244
Target Start/End: Original strand, 20205211 - 20205426
Alignment:
| Q |
29 |
ggaaggtcacctcgacacatgaagaggccatacagcatttcttccactttaacagtatgggatttttcgccatttgtggcgttggaggacaaataagaga |
128 |
Q |
| |
|
||||| |||||||||||||||||||| ||||||| |||||||||||||||| |||| |||||| ||| | |||||||| || |||||||||| | |
|
|
| T |
20205211 |
ggaagatcacctcgacacatgaagagaccatacacaatttcttccactttaaggctatgaaattttttgccgatggtggcgttcgacaacaaataagaca |
20205310 |
T |
|
| Q |
129 |
gaagtaatttgaagtttttcttagtgattgtactgtggtttcttgggcaattataggaaagataaattggatcttgtgaaaatctagaatcttgttttga |
228 |
Q |
| |
|
|||||||||||| |||||| | ||||||||| |||||||||||| |||||||||||||||||||| || |||| ||||| | ||||||||||||| || |
|
|
| T |
20205311 |
gaagtaatttgatgtttttgtcagtgattgtgttgtggtttcttgagcaattataggaaagataaaatgattcttctgaaagtttagaatcttgtttgga |
20205410 |
T |
|
| Q |
229 |
atgttttgtttgagga |
244 |
Q |
| |
|
|| |||||| ||||| |
|
|
| T |
20205411 |
atcatttgttcgagga |
20205426 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #7
Raw Score: 84; E-Value: 5e-40
Query Start/End: Original strand, 29 - 244
Target Start/End: Original strand, 22099234 - 22099449
Alignment:
| Q |
29 |
ggaaggtcacctcgacacatgaagaggccatacagcatttcttccactttaacagtatgggatttttcgccatttgtggcgttggaggacaaataagaga |
128 |
Q |
| |
|
||||| |||||||||||||||||||| ||||||| |||||||||||||||| |||| |||||| ||| | |||||||| || |||||||||| | |
|
|
| T |
22099234 |
ggaagatcacctcgacacatgaagagaccatacacaatttcttccactttaaggctatgaaattttttgccgatggtggcgttcgacaacaaataagaca |
22099333 |
T |
|
| Q |
129 |
gaagtaatttgaagtttttcttagtgattgtactgtggtttcttgggcaattataggaaagataaattggatcttgtgaaaatctagaatcttgttttga |
228 |
Q |
| |
|
|||||||||||| |||||| | ||||||||| |||||||||||| |||||||||||||||||||| || |||| ||||| | ||||||||||||| || |
|
|
| T |
22099334 |
gaagtaatttgatgtttttgtcagtgattgtgttgtggtttcttgagcaattataggaaagataaaatgattcttctgaaagtttagaatcttgtttgga |
22099433 |
T |
|
| Q |
229 |
atgttttgtttgagga |
244 |
Q |
| |
|
|| |||||| ||||| |
|
|
| T |
22099434 |
atcatttgttcgagga |
22099449 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #8
Raw Score: 62; E-Value: 7e-27
Query Start/End: Original strand, 29 - 249
Target Start/End: Original strand, 21971772 - 21971995
Alignment:
| Q |
29 |
ggaaggtcacctcgacacatgaagaggccatacagcatttcttccactttaacagtatgggatttttcgccatttgtggcgttggaggacaaataagaga |
128 |
Q |
| |
|
||||| |||||||||||||||||||| |||||| |||||||||||||||| || |||||| ||| | |||||||| || |||||||||| | |
|
|
| T |
21971772 |
ggaagatcacctcgacacatgaagagaccatacgcaatttcttccactttaagccaataaaattttttgccgatggtggcgttcgacaacaaataagaca |
21971871 |
T |
|
| Q |
129 |
gaagtaatttgaagtttttcttagtgattgtactgtggtttcttgggcaattataggaaagataaattggatcttgtgaa---aatctagaatcttgttt |
225 |
Q |
| |
|
|||||| ||||| |||||| | |||||||||| ||| ||||||| |||||||||||||||||||| |||||||| |||| | | ||||||||||| | |
|
|
| T |
21971872 |
gaagtagtttgatgtttttgtcagtgattgtattgtaatttcttgagcaattataggaaagataaaatggatcttctgaaagtattttagaatcttgtat |
21971971 |
T |
|
| Q |
226 |
tgaatgttttgtttgaggaacaag |
249 |
Q |
| |
|
|||| |||||||||||| |||| |
|
|
| T |
21971972 |
ggaatcatttgtttgaggagcaag |
21971995 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0264 (Bit Score: 153; Significance: 4e-81; HSPs: 1)
Name: scaffold0264
Description:
Target: scaffold0264; HSP #1
Raw Score: 153; E-Value: 4e-81
Query Start/End: Original strand, 17 - 249
Target Start/End: Original strand, 15829 - 16060
Alignment:
| Q |
17 |
cagaggcgaacgggaaggtcacctcgacacatgaagaggccatacagcatttcttccactttaacagtatgggatttttcgccatttgtggcgttggagg |
116 |
Q |
| |
|
|||||| |||||||||||||||||||||||||||||||||| |||| ||||||||||||||| || | ||| | ||| |||| ||||||||||||||| |
|
|
| T |
15829 |
cagaggtgaacgggaaggtcacctcgacacatgaagaggccgtacaccatttcttccacttttactttttggaaatttctgcca-ttgtggcgttggagg |
15927 |
T |
|
| Q |
117 |
acaaataagagagaagtaatttgaagtttttcttagtgattgtactgtggtttcttgggcaattataggaaagataaattggatcttgtgaaaatctaga |
216 |
Q |
| |
|
||| |||||||||||||||||||||||| || |||||||||||||||| |||||||| |||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
15928 |
acagataagagagaagtaatttgaagttattgttagtgattgtactgttgtttcttgagcaattataggaaagataaattggatcttgtgaaaatctaga |
16027 |
T |
|
| Q |
217 |
atcttgttttgaatgttttgtttgaggaacaag |
249 |
Q |
| |
|
|||||| |||||||| ||||||||||||||||| |
|
|
| T |
16028 |
atcttggtttgaatgatttgtttgaggaacaag |
16060 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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