View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF16676_high_32 (Length: 264)
Name: NF16676_high_32
Description: NF16676
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16676_high_32 |
 | |
|
Alignment Details
Target: chr3 (Bit Score: 204; Significance: 1e-111; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 204; E-Value: 1e-111
Query Start/End: Original strand, 19 - 251
Target Start/End: Original strand, 34023139 - 34023373
Alignment:
| Q |
19 |
ataaacttctccat--ttatgggaaccattgcatttgcataatgttgggcagcgaaaatgtgcactaaaaccaaagatttgctatgttcatgaagttgta |
116 |
Q |
| |
|
|||||||||||||| |||||||||||||||||||||||||||||| ||||| ||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
34023139 |
ataaacttctccatatttatgggaaccattgcatttgcataatgttaggcagtgaaaatgtgcactaaaaccaaagatttgctatgttcatgaagttgta |
34023238 |
T |
|
| Q |
117 |
aaatgcaattatagatagagttgtgaaagttgcaagtaagctgacaacgagttaaataatgataatattagtggacagattcatgtattcaatgaataac |
216 |
Q |
| |
|
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
34023239 |
aaatggaattatagatagagttgtgaaagttgcaagtaagctgacaacgagttaaataatgataatattagtggacagattcatgtattcaatgaataag |
34023338 |
T |
|
| Q |
217 |
tctatcactttagttcattgattagagttcatctc |
251 |
Q |
| |
|
||||||||||||||||||| ||||||||||||||| |
|
|
| T |
34023339 |
tctatcactttagttcattaattagagttcatctc |
34023373 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 170; E-Value: 3e-91
Query Start/End: Original strand, 19 - 251
Target Start/End: Original strand, 34030392 - 34030625
Alignment:
| Q |
19 |
ataaacttctccatttatgggaaccattgcatttgcataatgttgggcagcgaaaatgtgcactaaaacc-aaagatttgctatgttcatgaagttgtaa |
117 |
Q |
| |
|
|||||| |||||||||||| |||||||||||||||||||||||| ||||| ||||||||||||||||| | ||||||||||||||||||||||||||||| |
|
|
| T |
34030392 |
ataaacctctccatttatgcgaaccattgcatttgcataatgttaggcagtgaaaatgtgcactaaaaactaaagatttgctatgttcatgaagttgtaa |
34030491 |
T |
|
| Q |
118 |
aatgcaattatagatagagttgtgaaagttgcaagtaagctgacaacgagttaaataatgataatattagtggacagattcatgtattcaatgaataact |
217 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| || |||||||| ||||||| ||| |||||||||||||||||||||||||||||||||||||| | |
|
|
| T |
34030492 |
aatgcaattatagatagagttgtgaaagttgcaaataggctgacaatgagttaagtaaagataatattagtggacagattcatgtattcaatgaatatgt |
34030591 |
T |
|
| Q |
218 |
ctatcactttagttcattgattagagttcatctc |
251 |
Q |
| |
|
|| ||||||||||||||||||| ||||||||||| |
|
|
| T |
34030592 |
ctctcactttagttcattgattggagttcatctc |
34030625 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University