View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF16676_high_34 (Length: 253)

Name: NF16676_high_34
Description: NF16676
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF16676_high_34
NF16676_high_34
[»] chr3 (25 HSPs)
chr3 (15-236)||(55302295-55302516)
chr3 (19-236)||(30235745-30235963)
chr3 (30-236)||(43404063-43404269)
chr3 (19-236)||(28074238-28074454)
chr3 (30-236)||(43402120-43402326)
chr3 (19-236)||(47303872-47304090)
chr3 (30-236)||(49199801-49200007)
chr3 (15-236)||(54593321-54593543)
chr3 (15-236)||(40912954-40913177)
chr3 (30-236)||(4569583-4569789)
chr3 (19-236)||(34490833-34491051)
chr3 (37-236)||(6095929-6096128)
chr3 (50-236)||(41819852-41820037)
chr3 (30-236)||(36018482-36018689)
chr3 (50-236)||(46860122-46860309)
chr3 (35-236)||(5434207-5434410)
chr3 (37-198)||(26323881-26324042)
chr3 (19-180)||(34795490-34795652)
chr3 (30-228)||(39127191-39127389)
chr3 (30-225)||(35139046-35139250)
chr3 (30-105)||(31340502-31340577)
chr3 (94-235)||(1683184-1683325)
chr3 (139-193)||(31340449-31340503)
chr3 (56-185)||(36796064-36796198)
chr3 (108-179)||(50432937-50433006)
[»] chr5 (17 HSPs)
chr5 (14-236)||(40146877-40147099)
chr5 (19-236)||(213089-213307)
chr5 (19-236)||(28277934-28278154)
chr5 (30-236)||(38746637-38746843)
chr5 (15-236)||(5057666-5057885)
chr5 (33-236)||(27015168-27015370)
chr5 (19-237)||(16642207-16642424)
chr5 (19-233)||(27637949-27638161)
chr5 (19-228)||(316380-316596)
chr5 (19-187)||(35615792-35615961)
chr5 (19-232)||(30792861-30793073)
chr5 (19-236)||(30802562-30802779)
chr5 (32-200)||(14689774-14689942)
chr5 (35-232)||(10055040-10055238)
chr5 (53-180)||(4160289-4160416)
chr5 (107-203)||(33906392-33906487)
chr5 (19-119)||(33906578-33906678)
[»] scaffold0466 (1 HSPs)
scaffold0466 (30-236)||(6960-7166)
[»] chr7 (20 HSPs)
chr7 (19-233)||(6431592-6431806)
chr7 (15-211)||(32358191-32358387)
chr7 (19-236)||(4512720-4512936)
chr7 (47-235)||(2389931-2390119)
chr7 (19-236)||(34311046-34311264)
chr7 (19-236)||(3258616-3258834)
chr7 (30-236)||(6360242-6360448)
chr7 (50-236)||(29608393-29608574)
chr7 (30-236)||(2361301-2361507)
chr7 (32-232)||(48599668-48599858)
chr7 (19-236)||(4509036-4509244)
chr7 (19-236)||(4510878-4511086)
chr7 (19-236)||(22269595-22269811)
chr7 (35-232)||(22328732-22328931)
chr7 (30-138)||(30814397-30814505)
chr7 (54-180)||(5116290-5116417)
chr7 (107-201)||(22552804-22552896)
chr7 (181-236)||(8359648-8359703)
chr7 (94-164)||(37545308-37545379)
chr7 (101-180)||(43363798-43363877)
[»] chr4 (36 HSPs)
chr4 (15-236)||(26363882-26364103)
chr4 (19-236)||(8665027-8665245)
chr4 (19-236)||(27417281-27417498)
chr4 (30-236)||(40630616-40630822)
chr4 (30-236)||(55085695-55085902)
chr4 (30-236)||(2209340-2209546)
chr4 (30-236)||(6655588-6655794)
chr4 (15-235)||(46569877-46570097)
chr4 (30-233)||(54882652-54882855)
chr4 (30-236)||(50674176-50674382)
chr4 (19-236)||(50263028-50263245)
chr4 (19-183)||(8653220-8653385)
chr4 (19-189)||(10071505-10071676)
chr4 (47-236)||(35662091-35662280)
chr4 (50-211)||(46703153-46703314)
chr4 (50-233)||(12073045-12073227)
chr4 (19-232)||(41964037-41964249)
chr4 (50-236)||(379030-379217)
chr4 (37-236)||(33989501-33989700)
chr4 (19-180)||(22883138-22883300)
chr4 (19-180)||(22934802-22934964)
chr4 (126-236)||(8647866-8647976)
chr4 (90-192)||(10071963-10072065)
chr4 (55-236)||(38811409-38811590)
chr4 (30-180)||(35370722-35370874)
chr4 (19-199)||(3785711-3785891)
chr4 (30-180)||(35369824-35369971)
chr4 (81-236)||(33089582-33089737)
chr4 (35-198)||(26699814-26699979)
chr4 (30-178)||(25723604-25723752)
chr4 (56-182)||(47514885-47515012)
chr4 (51-153)||(32091222-32091326)
chr4 (143-236)||(34112357-34112450)
chr4 (56-164)||(22629290-22629399)
chr4 (128-182)||(6719316-6719370)
chr4 (15-48)||(41639182-41639215)
[»] chr2 (12 HSPs)
chr2 (15-236)||(45726547-45726767)
chr2 (19-236)||(1632062-1632279)
chr2 (15-236)||(35447214-35447435)
chr2 (19-231)||(17450212-17450423)
chr2 (19-236)||(7450921-7451138)
chr2 (19-236)||(42288440-42288655)
chr2 (50-232)||(33647820-33648004)
chr2 (30-193)||(42261983-42262146)
chr2 (80-236)||(24397738-24397896)
chr2 (30-164)||(30218435-30218570)
chr2 (56-205)||(40935541-40935690)
chr2 (142-203)||(24197643-24197703)
[»] chr6 (13 HSPs)
chr6 (15-236)||(21593283-21593504)
chr6 (30-236)||(3809038-3809245)
chr6 (15-236)||(17762604-17762827)
chr6 (19-230)||(2973275-2973487)
chr6 (50-236)||(5043280-5043465)
chr6 (34-229)||(22425162-22425358)
chr6 (13-231)||(26830459-26830677)
chr6 (66-236)||(26800438-26800608)
chr6 (96-237)||(603409-603550)
chr6 (30-178)||(25072817-25072965)
chr6 (107-236)||(17757791-17757922)
chr6 (29-70)||(26661580-26661621)
chr6 (29-70)||(26767551-26767592)
[»] scaffold0286 (1 HSPs)
scaffold0286 (30-236)||(11190-11396)
[»] chr8 (17 HSPs)
chr8 (30-236)||(42435321-42435527)
chr8 (15-235)||(11383603-11383823)
chr8 (15-233)||(22976151-22976368)
chr8 (19-236)||(44353416-44353630)
chr8 (30-182)||(4283178-4283330)
chr8 (30-236)||(40221376-40221583)
chr8 (50-205)||(2999882-3000037)
chr8 (95-233)||(40328476-40328614)
chr8 (37-167)||(20686456-20686586)
chr8 (19-176)||(40585345-40585503)
chr8 (84-231)||(40535538-40535684)
chr8 (137-201)||(10101525-10101588)
chr8 (108-182)||(10020150-10020224)
chr8 (66-231)||(3846153-3846318)
chr8 (60-228)||(3817670-3817840)
chr8 (142-203)||(28461305-28461365)
chr8 (54-236)||(11136796-11136979)
[»] chr1 (28 HSPs)
chr1 (30-236)||(29135880-29136085)
chr1 (19-233)||(34603197-34603411)
chr1 (19-236)||(11348319-11348536)
chr1 (19-233)||(34602672-34602886)
chr1 (23-236)||(42298305-42298518)
chr1 (19-236)||(47255669-47255881)
chr1 (51-236)||(7482560-7482746)
chr1 (30-236)||(13547419-13547625)
chr1 (30-236)||(13549330-13549536)
chr1 (30-236)||(37879241-37879447)
chr1 (19-236)||(19754112-19754329)
chr1 (30-236)||(37033403-37033605)
chr1 (51-236)||(28242041-28242226)
chr1 (50-236)||(37167949-37168135)
chr1 (30-229)||(193244-193442)
chr1 (19-236)||(19752307-19752523)
chr1 (51-236)||(47114825-47115009)
chr1 (35-178)||(6808083-6808228)
chr1 (30-228)||(41135452-41135651)
chr1 (19-166)||(31928208-31928348)
chr1 (19-228)||(9109739-9109949)
chr1 (93-200)||(16216860-16216966)
chr1 (108-172)||(22079045-22079109)
chr1 (101-227)||(6068321-6068447)
chr1 (101-203)||(28318122-28318225)
chr1 (137-182)||(3331283-3331328)
chr1 (173-236)||(31926036-31926099)
chr1 (137-230)||(38747052-38747144)
[»] scaffold0014 (1 HSPs)
scaffold0014 (32-236)||(80613-80817)
[»] scaffold0176 (1 HSPs)
scaffold0176 (19-236)||(18331-18547)
[»] scaffold0002 (1 HSPs)
scaffold0002 (30-193)||(490818-490981)
[»] scaffold0197 (1 HSPs)
scaffold0197 (19-179)||(1792-1953)


Alignment Details
Target: chr3 (Bit Score: 194; Significance: 1e-105; HSPs: 25)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 194; E-Value: 1e-105
Query Start/End: Original strand, 15 - 236
Target Start/End: Complemental strand, 55302516 - 55302295
Alignment:
Q  15 tatgtaagcactccatgacccatttgttgggtaaacttggtgaatctcattgaaaccaaaggaggaaacttttagggttttagatactaaaagttgaggg 114  Q
    |||||||||||||||||||||||||||||||||| |||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  55302516 tatgtaagcactccatgacccatttgttgggtaagcttggtgaatttcattgaaaccaaaggaggaaacttttagggttttagatactaaaagttgaggg 55302417  T
Q  115 tctttggatgcggttcaaagcttcaagatgtgaatcttggagaaccaaaagagggggctcttgggaaaagggttggtgcattttggggaaaattcataag 214  Q
    |||||||||| |||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| ||||||| ||||||||| ||    
T  55302416 tctttggatgaggttcaaagcttcaagatgtgaatcttggagaaccaaaagagggagctcttgggaaaagggttggtgccttttgggaaaaattcatgag 55302317  T
Q  215 gttggaaaacacatgagtggag 236  Q
    ||||||||||||||||||||||    
T  55302316 gttggaaaacacatgagtggag 55302295  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 159; E-Value: 9e-85
Query Start/End: Original strand, 19 - 236
Target Start/End: Original strand, 30235745 - 30235963
Alignment:
Q  19 taagcactccatgacccattt-gttgggtaaacttggtgaatctcattgaaaccaaaggaggaaacttttagggttttagatactaaaagttgagggtct 117  Q
    ||||||||||||||||||||| ||||||||| |||||||||||||| ||||||||||||||  ||||||||||||||||||||||||| |||||||||||    
T  30235745 taagcactccatgacccattttgttgggtaagcttggtgaatctcaatgaaaccaaaggagagaacttttagggttttagatactaaaggttgagggtct 30235844  T
Q  118 ttggatgcggttcaaagcttcaagatgtgaatcttggagaaccaaaagagggggctcttgggaaaagggttggtgcattttggggaaaattcataaggtt 217  Q
    |||| || |||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |||||||||| ||||||  ||||    
T  30235845 ttgggtgaggttcaaagcttcaagatgtgaatcttggagaaccaaaagagggggctcttgtgaaaagggttggtgccttttggggaatattcatggggtt 30235944  T
Q  218 ggaaaacacatgagtggag 236  Q
    |||||||||| ||||||||    
T  30235945 ggaaaacacaagagtggag 30235963  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 159; E-Value: 9e-85
Query Start/End: Original strand, 30 - 236
Target Start/End: Complemental strand, 43404269 - 43404063
Alignment:
Q  30 tgacccatttgttgggtaaacttggtgaatctcattgaaaccaaaggaggaaacttttagggttttagatactaaaagttgagggtctttggatgcggtt 129  Q
    ||||||||||||||||| | ||||||||||||||| ||||||||| |||| ||||||||||||||||||||||||||||||||||||||||| || ||||    
T  43404269 tgacccatttgttgggtgagcttggtgaatctcatggaaaccaaatgagggaacttttagggttttagatactaaaagttgagggtctttgggtgaggtt 43404170  T
Q  130 caaagcttcaagatgtgaatcttggagaaccaaaagagggggctcttgggaaaagggttggtgcattttggggaaaattcataaggttggaaaacacatg 229  Q
    ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| ||||||  ||||||||||||||||    
T  43404169 caaagtttcaagatgtgaatcttggagaaccaaaagagggggctcttgggaaaagggttggtgccttttggggaagattcatggggttggaaaacacatg 43404070  T
Q  230 agtggag 236  Q
    |||||||    
T  43404069 agtggag 43404063  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 150; E-Value: 2e-79
Query Start/End: Original strand, 19 - 236
Target Start/End: Original strand, 28074238 - 28074454
Alignment:
Q  19 taagcactccatgacccatttgttgggtaaacttggtgaatctcattgaaaccaaaggaggaaacttttagggttttagatactaaaagttgagggtctt 118  Q
    |||||||| ||||||||||||||||||||| ||||||||||||||| |||||||||||||||||||||||||||||||||||||||| ||||||||||||    
T  28074238 taagcacttcatgacccatttgttgggtaagcttggtgaatctcatggaaaccaaaggaggaaacttttagggttttagatactaaaggttgagggtctt 28074337  T
Q  119 tggatgcggttcaaagcttcaagatgtgaatcttggagaaccaaaagagggggctcttgggaaaagggttggtgcattttggggaaaattcataaggttg 218  Q
    ||| || ||||||||| |||||||||||||||||||||||||||||||||||||||||||| |||  |||||||| |||||||||| ||||||  || ||    
T  28074338 tgggtgaggttcaaagtttcaagatgtgaatcttggagaaccaaaagagggggctcttggg-aaatagttggtgcgttttggggaagattcatggggatg 28074436  T
Q  219 gaaaacacatgagtggag 236  Q
    | ||||||||||||||||    
T  28074437 ggaaacacatgagtggag 28074454  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 147; E-Value: 1e-77
Query Start/End: Original strand, 30 - 236
Target Start/End: Complemental strand, 43402326 - 43402120
Alignment:
Q  30 tgacccatttgttgggtaaacttggtgaatctcattgaaaccaaaggaggaaacttttagggttttagatactaaaagttgagggtctttggatgcggtt 129  Q
    |||| |||||||||||| | |||||||||||| || |||||||||||||| ||||||||||||||||||||||||| ||||||||||||||| || ||||    
T  43402326 tgactcatttgttgggtgagcttggtgaatcttatggaaaccaaaggagggaacttttagggttttagatactaaaggttgagggtctttgggtgaggtt 43402227  T
Q  130 caaagcttcaagatgtgaatcttggagaaccaaaagagggggctcttgggaaaagggttggtgcattttggggaaaattcataaggttggaaaacacatg 229  Q
    |||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |||||||||| ||||||  |||||| |||||||||    
T  43402226 caaagcttcaagatgtgaatcttggagaaccaaaagagggggctcttgagaaaagggttggtgccttttggggaagattcatggggttgggaaacacatg 43402127  T
Q  230 agtggag 236  Q
    |||||||    
T  43402126 agtggag 43402120  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 147; E-Value: 1e-77
Query Start/End: Original strand, 19 - 236
Target Start/End: Original strand, 47303872 - 47304090
Alignment:
Q  19 taagcactccatgacccattt-gttgggtaaacttggtgaatctcattgaaaccaaaggaggaaacttttagggttttagatactaaaagttgagggtct 117  Q
    ||||||||||| ||||||||| ||||||||| ||||||||||||||| |||| ||||||||  |||||||| |||||||||||||||| ||||| |||||    
T  47303872 taagcactccacgacccattttgttgggtaagcttggtgaatctcatggaaatcaaaggagagaacttttatggttttagatactaaatgttgaaggtct 47303971  T
Q  118 ttggatgcggttcaaagcttcaagatgtgaatcttggagaaccaaaagagggggctcttgggaaaagggttggtgcattttggggaaaattcataaggtt 217  Q
    |||| || |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| ||||||  ||||    
T  47303972 ttgggtgaggttcaaagcttcaagatgtgaatcttggagaaccaaaagagggggctcttgggaaaagggttggtgccttttggggaagattcatggggtt 47304071  T
Q  218 ggaaaacacatgagtggag 236  Q
    || ||||||||||||||||    
T  47304072 gggaaacacatgagtggag 47304090  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 147; E-Value: 1e-77
Query Start/End: Original strand, 30 - 236
Target Start/End: Complemental strand, 49200007 - 49199801
Alignment:
Q  30 tgacccatttgttgggtaaacttggtgaatctcattgaaaccaaaggaggaaacttttagggttttagatactaaaagttgagggtctttggatgcggtt 129  Q
    ||||||||||||||||||| ||||||||||||||| |||||||||||||| ||||||||||||||||||||||||| ||||||||||||||| || ||||    
T  49200007 tgacccatttgttgggtaagcttggtgaatctcatggaaaccaaaggagggaacttttagggttttagatactaaaggttgagggtctttgggtgaggtt 49199908  T
Q  130 caaagcttcaagatgtgaatcttggagaaccaaaagagggggctcttgggaaaagggttggtgcattttggggaaaattcataaggttggaaaacacatg 229  Q
    ||||| |||||||||||||||||||||||||||||||||||||| ||| ||||||||||||||| |||||||||| ||||||  |||||| ||||| |||    
T  49199907 caaagtttcaagatgtgaatcttggagaaccaaaagagggggctattgtgaaaagggttggtgccttttggggaagattcatggggttgggaaacatatg 49199808  T
Q  230 agtggag 236  Q
    |||||||    
T  49199807 agtggag 49199801  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 147; E-Value: 1e-77
Query Start/End: Original strand, 15 - 236
Target Start/End: Original strand, 54593321 - 54593543
Alignment:
Q  15 tatgtaagcactccatgacccatttgttgggtaaacttggtgaatctcattgaaaccaaaggaggaaacttttagggttt-tagatactaaaagttgagg 113  Q
    |||||||||||||||||||||||||||| |  || ||||||||||||||| |||||||||||||| |||||||||||| | ||||||||||| |||||||    
T  54593321 tatgtaagcactccatgacccatttgttcgaaaagcttggtgaatctcatggaaaccaaaggagggaacttttagggtatgtagatactaaaggttgagg 54593420  T
Q  114 gtctttggatgcggttcaaagcttcaagatgtgaatcttggagaaccaaaagagggggctcttgggaaaagggttggtgcattttggggaaaattcataa 213  Q
    ||| |||| || |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |||||||||| ||||||      
T  54593421 gtccttgggtgaggttcaaagcttcaagatgtgaatcttggagaaccaaaagagggggctcttgggaaaagggttggtaccttttggggaagattcatgg 54593520  T
Q  214 ggttggaaaacacatgagtggag 236  Q
    || ||||||||||||||||||||    
T  54593521 ggatggaaaacacatgagtggag 54593543  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 140; E-Value: 2e-73
Query Start/End: Original strand, 15 - 236
Target Start/End: Original strand, 40912954 - 40913177
Alignment:
Q  15 tatgtaagcactccatgacccatttgttgggtaaa-cttggtgaatctcattgaaaccaaaggaggaaacttttagggttttagatactaaaagttgagg 113  Q
    |||||||||| ||  |||||||||||||||||||| ||||||||||||||| ||||||||||||||  |||||||||||||||||||||||| ||| |||    
T  40912954 tatgtaagcattctttgacccatttgttgggtaaagcttggtgaatctcatggaaaccaaaggaggggacttttagggttttagatactaaaggtttagg 40913053  T
Q  114 gtctttggatgcggttcaaagcttcaagatgtgaatcttggagaaccaaaagagggggctcttgggaaaagggttggtg-cattttggggaaaattcata 212  Q
    |||||||| || ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| | |||||| ||| ||||||     
T  40913054 gtctttgggtgaggttcaaagcttcaaaatgtgaatcttggagaaccaaaagagggggctcttgggaaaagggttggtgcctttttggagaagattcatg 40913153  T
Q  213 aggttggaaaacacatgagtggag 236  Q
     |||||| ||||||||||||||||    
T  40913154 gggttgggaaacacatgagtggag 40913177  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 135; E-Value: 2e-70
Query Start/End: Original strand, 30 - 236
Target Start/End: Original strand, 4569583 - 4569789
Alignment:
Q  30 tgacccatttgttgggtaaacttggtgaatctcattgaaaccaaaggaggaaacttttagggttttagatactaaaagttgagggtctttggatgcggtt 129  Q
    |||||||||||||| |||| ||||||||||||||| |||||||||||||| ||||||||||||||||||||||||| ||||||||||||||| || ||||    
T  4569583 tgacccatttgttgagtaagcttggtgaatctcatggaaaccaaaggagggaacttttagggttttagatactaaaggttgagggtctttgggtgaggtt 4569682  T
Q  130 caaagcttcaagatgtgaatcttggagaaccaaaagagggggctcttgggaaaagggttggtgcattttggggaaaattcataaggttggaaaacacatg 229  Q
    |||||||||||||||| |||||||||||| |||||||||||||||||||||||||||   |||| | |||||||| ||||||  |||||| |||||||||    
T  4569683 caaagcttcaagatgtaaatcttggagaatcaaaagagggggctcttgggaaaagggggtgtgcctattggggaagattcatggggttgggaaacacatg 4569782  T
Q  230 agtggag 236  Q
    |||||||    
T  4569783 agtggag 4569789  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 135; E-Value: 2e-70
Query Start/End: Original strand, 19 - 236
Target Start/End: Original strand, 34490833 - 34491051
Alignment:
Q  19 taagcactccatgacccatttg-ttgggtaaacttggtgaatctcattgaaaccaaaggaggaaacttttagggttttagatactaaaagttgagggtct 117  Q
    |||||||||||| ||||||||  ||| | || ||||||||||||||| |||||||||||||  ||||||||||||||||||||||||| |||||||||||    
T  34490833 taagcactccatcacccattttattgtgaaagcttggtgaatctcatggaaaccaaaggagagaacttttagggttttagatactaaaggttgagggtct 34490932  T
Q  118 ttggatgcggttcaaagcttcaagatgtgaatcttggagaaccaaaagagggggctcttgggaaaagggttggtgcattttggggaaaattcataaggtt 217  Q
    |||| || |||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |||||| ||| ||||||   |||    
T  34490933 ttgggtgaggttcaaagcttcaagatgtgaatcttggagaaccaaaagagggggctcttgtgaaaagggttggtgccttttggagaagattcatggagtt 34491032  T
Q  218 ggaaaacacatgagtggag 236  Q
    | |||||||||||||||||    
T  34491033 gaaaaacacatgagtggag 34491051  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 132; E-Value: 1e-68
Query Start/End: Original strand, 37 - 236
Target Start/End: Complemental strand, 6096128 - 6095929
Alignment:
Q  37 tttgttgggtaaacttggtgaatctcattgaaaccaaaggaggaaacttttagggttttagatactaaaagttgagggtctttggatgcggttcaaagct 136  Q
    ||||||||| || ||||||||||||||| |||| || |||||  ||||||||||||||||||||||||| ||||||||||||||| || |||||||||||    
T  6096128 tttgttgggaaagcttggtgaatctcatggaaatcagaggagagaacttttagggttttagatactaaaggttgagggtctttgggtgaggttcaaagct 6096029  T
Q  137 tcaagatgtgaatcttggagaaccaaaagagggggctcttgggaaaagggttggtgcattttggggaaaattcataaggttggaaaacacatgagtggag 236  Q
    ||||||||||||||||||||||||||||||||||||||||  ||||||||||||||| |||||||||| ||||||  |||||| ||||||||||||||||    
T  6096028 tcaagatgtgaatcttggagaaccaaaagagggggctcttttgaaaagggttggtgccttttggggaagattcatggggttgggaaacacatgagtggag 6095929  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 127; E-Value: 1e-65
Query Start/End: Original strand, 50 - 236
Target Start/End: Complemental strand, 41820037 - 41819852
Alignment:
Q  50 cttggtgaatctcattgaaaccaaaggaggaaacttttagggttttagatactaaaagttgagggtctttggatgcggttcaaagcttcaagatgtgaat 149  Q
    ||||||||||||||| |||||||||||||  |||||||||| |||||||||||||| ||||||||||||||| || ||||||||||||||||||||||||    
T  41820037 cttggtgaatctcatggaaaccaaaggagataacttttaggtttttagatactaaaggttgagggtctttgggtgaggttcaaagcttcaagatgtgaat 41819938  T
Q  150 cttggagaaccaaaagagggggctcttgggaaaagggttggtgcattttggggaaaattcataaggttggaaaacacatgagtggag 236  Q
    ||| |||||||||||||||||||||||||||||||||||||||| |||| ||||| ||||||  |||||| ||||||||||||||||    
T  41819937 cttagagaaccaaaagagggggctcttgggaaaagggttggtgcctttt-gggaagattcatggggttgggaaacacatgagtggag 41819852  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 124; E-Value: 7e-64
Query Start/End: Original strand, 30 - 236
Target Start/End: Original strand, 36018482 - 36018689
Alignment:
Q  30 tgacccatttgttgggtaaacttggtgaatctcattgaaaccaaaggaggaaacttttagggttt-tagatactaaaagttgagggtctttggatgcggt 128  Q
    ||||||||||||||| ||| ||||||||||||||| |||||||||||||  |||||| ||||| | ||||||||||| |||||||||||||||||| |||    
T  36018482 tgacccatttgttggataagcttggtgaatctcatggaaaccaaaggagagaactttcagggtatgtagatactaaaggttgagggtctttggatgaggt 36018581  T
Q  129 tcaaagcttcaagatgtgaatcttggagaaccaaaagagggggctcttgggaaaagggttggtgcattttggggaaaattcataaggttggaaaacacat 228  Q
    ||||||||||||||||||||||||||||||||||||||||| ||| ||||||||||||||||||| |||||||||| || |||  || ||| ||||||||    
T  36018582 tcaaagcttcaagatgtgaatcttggagaaccaaaagagggagcttttgggaaaagggttggtgccttttggggaagatccatggggatgggaaacacat 36018681  T
Q  229 gagtggag 236  Q
    || |||||    
T  36018682 gaatggag 36018689  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 124; E-Value: 7e-64
Query Start/End: Original strand, 50 - 236
Target Start/End: Original strand, 46860122 - 46860309
Alignment:
Q  50 cttggtgaatctcattgaaaccaaaggaggaaacttttagggttt-tagatactaaaagttgagggtctttggatgcggttcaaagcttcaagatgtgaa 148  Q
    ||||||||||||||| ||||||||| |||  |||||||||||| | ||||||||||| ||||||||||||||| || |||||||||||||| ||||||||    
T  46860122 cttggtgaatctcatggaaaccaaatgagagaacttttagggtatgtagatactaaaggttgagggtctttgggtgaggttcaaagcttcatgatgtgaa 46860221  T
Q  149 tcttggagaaccaaaagagggggctcttgggaaaagggttggtgcattttggggaaaattcataaggttggaaaacacatgagtggag 236  Q
    ||||||||||||||||||||||||||||||||||||||||||||| |||||||||| ||||||| || ||| ||||||||||||||||    
T  46860222 tcttggagaaccaaaagagggggctcttgggaaaagggttggtgccttttggggaagattcatagggatgggaaacacatgagtggag 46860309  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 88; E-Value: 2e-42
Query Start/End: Original strand, 35 - 236
Target Start/End: Complemental strand, 5434410 - 5434207
Alignment:
Q  35 catttgttgggtaaacttggtgaatctcattgaaaccaaaggaggaaacttttagggt-tttagatactaaaagttgagggtctttggatgcggttcaaa 133  Q
    ||||||||| |||| ||||||||||||||| |||| ||||||||| |||||||||| | ||||||||| ||||||| ||||||||||   | |||| |||    
T  5434410 catttgttgagtaagcttggtgaatctcatggaaatcaaaggagggaacttttaggatatttagataccaaaagttaagggtctttgagggaggtttaaa 5434311  T
Q  134 gcttcaagatgtgaatcttggagaaccaaaagagggggctcttgggaaaagggttggtgcattttgggga-aaattcataaggttggaaaacacatgagt 232  Q
    |||||||||||| ||||||  |||||||||||||||||||||||||||||||||| |||  |||| |||| | ||||||  |||| | ||||||||||||    
T  5434310 gcttcaagatgtaaatcttatagaaccaaaagagggggctcttgggaaaagggttagtgttttttagggagagattcatggggttaggaaacacatgagt 5434211  T
Q  233 ggag 236  Q
    ||||    
T  5434210 ggag 5434207  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 83; E-Value: 2e-39
Query Start/End: Original strand, 37 - 198
Target Start/End: Complemental strand, 26324042 - 26323881
Alignment:
Q  37 tttgttgggtaaacttggtgaatctcattgaaaccaaaggaggaaacttttagggt-tttagatactaaaagttgagggtctttggatgcggttcaaagc 135  Q
    ||||||| ||||  |||||||||||||| ||||||||||||||||||||||| | | ||||||||||||| |||||||||| |||| ||  |||||||||    
T  26324042 tttgttgagtaagtttggtgaatctcatggaaaccaaaggaggaaacttttaagatatttagatactaaaggttgagggtcattgggtgaagttcaaagc 26323943  T
Q  136 ttcaagatgtgaatcttggagaaccaaaagagggggctcttgggaaaagggttggtgcatttt 198  Q
    |||||||||| ||||||| |||| |||||||| ||||| ||||| ||||||||||||||||||    
T  26323942 ttcaagatgtaaatcttgaagaatcaaaagagagggctattggg-aaagggttggtgcatttt 26323881  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 67; E-Value: 7e-30
Query Start/End: Original strand, 19 - 180
Target Start/End: Original strand, 34795490 - 34795652
Alignment:
Q  19 taagcactccatgacccatttgttgggtaaacttggtgaatctcattgaaaccaaaggaggaaacttttagggt-tttagatactaaaagttgagggtct 117  Q
    ||||||||| |||||  |||||||||||||  ||||||||||  ||  ||||||||||||  | |||||||||| ||||||||||||| ||||| ||||     
T  34795490 taagcactctatgacttatttgttgggtaagtttggtgaatcctatgaaaaccaaaggagagatcttttagggtatttagatactaaaggttgatggtcg 34795589  T
Q  118 ttggatgcggttcaaagcttcaagatgtgaatcttggagaaccaaaagagggggctcttggga 180  Q
    |||| ||  ||||||||||||||||| ||||||||||||||||| ||||||||| ||| ||||    
T  34795590 ttgggtgatgttcaaagcttcaagatctgaatcttggagaaccagaagagggggttctaggga 34795652  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 30 - 228
Target Start/End: Original strand, 39127191 - 39127389
Alignment:
Q  30 tgacccatttgttgggtaaacttggtgaatctcattgaaaccaaaggaggaaacttttagggt-tttagatactaaaagttgagggtctttggatgcggt 128  Q
    |||| ||||||||| |||| ||| ||||||||||| |||| ||| ||||  |||||||||||| |||| |||||||| |||  ||| |||||| || |||    
T  39127191 tgactcatttgttgagtaagcttagtgaatctcatggaaatcaacggagagaacttttagggtatttacatactaaaggtttggggcctttgg-tgaggt 39127289  T
Q  129 tcaaagcttcaagatgtgaatcttggagaaccaaaagagggggctcttgggaaaagggttggtgcattttgggga-aaattcataaggttggaaaacaca 227  Q
    ||||||||||||||| |||||||| |||||| |||| ||||| ||||| |||| || |||||||| |||| |||| | |||||| ||||||| |||||||    
T  39127290 tcaaagcttcaagatatgaatcttagagaactaaaataggggactctt-ggaagagagttggtgcctttttgggagagattcatgaggttgggaaacaca 39127388  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 30 - 225
Target Start/End: Complemental strand, 35139250 - 35139046
Alignment:
Q  30 tgacccatttgttgggtaaacttggtgaatctcattgaaaccaaaggaggaaacttttagggt-tttagatactaaaagttgagggtctttggatgcggt 128  Q
    |||||||||||||  |||| |||||||||| |||| ||||||||||||||  |||||| |||| ||||||||||||| ||||||||||||| |||| |||    
T  35139250 tgacccatttgttaagtaagcttggtgaatttcatggaaaccaaaggagggtactttttgggtatttagatactaaacgttgagggtctttagatgaggt 35139151  T
Q  129 tcaaagctt-------caagatgtgaatcttggagaaccaaaag-agggggctcttgggaaaagggttggtgcattttgggga-aaattcataaggttgg 219  Q
    ||||| |||        ||||||||||||||||||||||||||| |  ||| |||| || ||||||||| ||| ||||| ||| | |||||| |||||||    
T  35139150 tcaaaactttaagatgtaagatgtgaatcttggagaaccaaaagaaatgggttcttcgg-aaagggttgatgccttttgaggagagattcatgaggttgg 35139052  T
Q  220 aaaaca 225  Q
    ||||||    
T  35139051 aaaaca 35139046  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 30 - 105
Target Start/End: Complemental strand, 31340577 - 31340502
Alignment:
Q  30 tgacccatttgttgggtaaacttggtgaatctcattgaaaccaaaggaggaaacttttagggttttagatactaaa 105  Q
    ||||||||||||||||||| |||||||||||| || |||||||||||||  |||||||||||||||||||||||||    
T  31340577 tgacccatttgttgggtaagcttggtgaatcttatggaaaccaaaggagagaacttttagggttttagatactaaa 31340502  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 94 - 235
Target Start/End: Original strand, 1683184 - 1683325
Alignment:
Q  94 ttagatactaaaagttgagggtctttggatgcggttcaaa-gcttcaagatgtgaatcttggagaaccaaaagagggggctcttgggaaaagggttggtg 192  Q
    ||||| |||||| ||||||||||||||| || | |||||| | ||||| ||||||||||||||||||||||||||  || | || || ||||||||||||    
T  1683184 ttagaaactaaaggttgagggtctttgggtgagattcaaatgtttcaa-atgtgaatcttggagaaccaaaagagaaggtttttcgg-aaagggttggtg 1683281  T
Q  193 cattttgggga-aaattcataaggttggaaaacacatgagtgga 235  Q
    ||||||||| | | ||||||  ||||||||||||||||||||||    
T  1683282 cattttgggaagagattcatggggttggaaaacacatgagtgga 1683325  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 139 - 193
Target Start/End: Complemental strand, 31340503 - 31340449
Alignment:
Q  139 aagatgtgaatcttggagaaccaaaagagggggctcttgggaaaagggttggtgc 193  Q
    ||||||||||||||||||||||||||||||||||||||||||||| |||||||||    
T  31340503 aagatgtgaatcttggagaaccaaaagagggggctcttgggaaaatggttggtgc 31340449  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #24
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 56 - 185
Target Start/End: Original strand, 36796064 - 36796198
Alignment:
Q  56 gaatctcattgaaaccaaaggaggaaacttttagggtt-ttagatactaaaagttgagggtctttggatgcggttcaaagcttcaagatgtgaa----tc 150  Q
    ||||||||| |||| ||||||||  |||||||||||   ||||| |||||| ||||| ||||||| |||| |||||||||||||||||||| ||    |     
T  36796064 gaatctcatggaaatcaaaggagataacttttagggaacttagaaactaaaggttgaaggtctttagatgaggttcaaagcttcaagatgtaaacctctt 36796163  T
Q  151 ttggagaaccaaaagagggggctcttgggaaaagg 185  Q
    ||| |||||||||||||||| ||||| | ||||||    
T  36796164 ttgaagaaccaaaagaggggactctttgaaaaagg 36796198  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #25
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 108 - 179
Target Start/End: Complemental strand, 50433006 - 50432937
Alignment:
Q  108 ttgagggtctttggatgcggttcaaagcttcaagatgtgaatcttggagaaccaaaagagggggctcttggg 179  Q
    |||||||||||||  || | |||||||  |||||| ||||||||||||  |||||||||||||||| |||||    
T  50433006 ttgagggtctttgagtgagattcaaagggtcaagaggtgaatcttgga--accaaaagagggggctattggg 50432937  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 171; Significance: 6e-92; HSPs: 17)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 171; E-Value: 6e-92
Query Start/End: Original strand, 14 - 236
Target Start/End: Original strand, 40146877 - 40147099
Alignment:
Q  14 atatgtaagcactccatgacccatttgttgggtaaacttggtgaatctcattgaaaccaaaggaggaaacttttagggttttagatactaaaagttgagg 113  Q
    ||||||||||||||||||||||||||||||| ||| ||||||||||||||| |||||||||||| ||||||||||||||||||||||||||| |||||||    
T  40146877 atatgtaagcactccatgacccatttgttggttaagcttggtgaatctcatggaaaccaaaggatgaaacttttagggttttagatactaaaggttgagg 40146976  T
Q  114 gtctttggatgcggttcaaagcttcaagatgtgaatcttggagaaccaaaagagggggctcttgggaaaagggttggtgcattttggggaaaattcataa 213  Q
    |||||||| || |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |||||||||| ||||||      
T  40146977 gtctttgggtgaggttcaaagcttcaagatgtgaatcttggagaaccaaaagagggggctcttgggaaaatggttggtgccttttggggaagattcatgg 40147076  T
Q  214 ggttggaaaacacatgagtggag 236  Q
    |||||| ||||||||||||||||    
T  40147077 ggttgggaaacacatgagtggag 40147099  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 151; E-Value: 5e-80
Query Start/End: Original strand, 19 - 236
Target Start/End: Original strand, 213089 - 213307
Alignment:
Q  19 taagcactccatgacccatttgttgggtaaacttggtgaatctcattgaaaccaaaggaggaaacttttagggttttagatactaaaagttgagggtctt 118  Q
    |||| |||||||||||||||| |||||||| |||| |||||||||| |||||||||||||| ||||||||||||||||||||||||| ||||||||||||    
T  213089 taagtactccatgacccattttttgggtaagcttgatgaatctcatggaaaccaaaggagggaacttttagggttttagatactaaaggttgagggtctt 213188  T
Q  119 tggatgcggttcaaagcttcaagatgtgaatctt-ggagaaccaaaagagggggctcttgggaaaagggttggtgcattttggggaaaattcataaggtt 217  Q
    ||| || ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |||||| ||| ||||||  ||||    
T  213189 tgggtgaggttcaaagcttcaagatgtgaatcttgggagaaccaaaagagggggctcttgggaaaagggttggtgccttttggagaagattcatggggtt 213288  T
Q  218 ggaaaacacatgagtggag 236  Q
    || ||||||||||||||||    
T  213289 gggaaacacatgagtggag 213307  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 146; E-Value: 5e-77
Query Start/End: Original strand, 19 - 236
Target Start/End: Original strand, 28277934 - 28278154
Alignment:
Q  19 taagcactccatgacccatttgttggg--taaacttggtgaatctcattgaaaccaaaggaggaaacttttagggttttagatactaaaagttgagggtc 116  Q
    |||||||| ||||||||||||||||    ||| ||||||||||||||  ||||| |||||||||||||||||||||||||||||||||| ||||||||||    
T  28277934 taagcacttcatgacccatttgttgaaaataagcttggtgaatctcaaggaaactaaaggaggaaacttttagggttttagatactaaaggttgagggtc 28278033  T
Q  117 tttggatgcggttcaaagcttcaagatgtgaatcttggagaaccaaaaga-gggggctcttgggaaaagggttggtgcattttggggaaaattcataagg 215  Q
    |||||||| ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |||||||||| ||||||  ||    
T  28278034 tttggatgaggttcaaagcttcaagatgtgaatcttggagaaccaaaagaggggggctcttgggaaaagggttggtgccttttggggaagattcatgggg 28278133  T
Q  216 ttggaaaacacatgagtggag 236  Q
    |||| ||||||||||||||||    
T  28278134 ttgggaaacacatgagtggag 28278154  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 139; E-Value: 8e-73
Query Start/End: Original strand, 30 - 236
Target Start/End: Original strand, 38746637 - 38746843
Alignment:
Q  30 tgacccatttgttgggtaaacttggtgaatctcattgaaaccaaaggaggaaacttttagggttttagatactaaaagttgagggtctttggatgcggtt 129  Q
    |||| |||||||||||||| ||||||||||||||| |||||||||||||  ||||||||||||||||||||||||| ||||||||||||||| || ||||    
T  38746637 tgactcatttgttgggtaagcttggtgaatctcatggaaaccaaaggagagaacttttagggttttagatactaaaggttgagggtctttgggtgaggtt 38746736  T
Q  130 caaagcttcaagatgtgaatcttggagaaccaaaagagggggctcttgggaaaagggttggtgcattttggggaaaattcataaggttggaaaacacatg 229  Q
    ||||| |||||||||||||||||||||||||||||||||||||||||  ||||||||||||||| |||||||||| ||||||  |||||| |||||| ||    
T  38746737 caaagtttcaagatgtgaatcttggagaaccaaaagagggggctcttaagaaaagggttggtgccttttggggaagattcatggggttgggaaacacgtg 38746836  T
Q  230 agtggag 236  Q
    |||||||    
T  38746837 agtggag 38746843  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 126; E-Value: 4e-65
Query Start/End: Original strand, 15 - 236
Target Start/End: Original strand, 5057666 - 5057885
Alignment:
Q  15 tatgtaagcactccatgacccatttgttgggtaaacttggtgaatctcattgaaaccaaaggaggaaacttttagggttttagatactaaaagttgaggg 114  Q
    ||||||||||||||||||||||||||||    |  || |||||||||||| |||||||||||||  ||||||||||||||||||||||||| ||||||||    
T  5057666 tatgtaagcactccatgacccatttgttaaagag-ctgggtgaatctcatggaaaccaaaggagagaacttttagggttttagatactaaaggttgaggg 5057764  T
Q  115 tctttggatgcggttcaaagcttcaagatgtgaatcttggagaaccaaaagagggggctcttgggaaaagggttggtgcattttggggaaaattcataag 214  Q
    ||||||| || || |||||||||||||||||||||||| ||||||||||||| |||||| ||||||||| ||||||||| |||||||||| ||||||  |    
T  5057765 tctttgggtgaggatcaaagcttcaagatgtgaatctttgagaaccaaaaga-ggggcttttgggaaaaaggttggtgccttttggggaagattcatggg 5057863  T
Q  215 gttggaaaacacatgagtggag 236  Q
    ||||||||||||||||||||||    
T  5057864 gttggaaaacacatgagtggag 5057885  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 120; E-Value: 2e-61
Query Start/End: Original strand, 33 - 236
Target Start/End: Original strand, 27015168 - 27015370
Alignment:
Q  33 cccatttgttgggtaaacttggtgaatctcattgaaaccaaaggaggaaacttttagggttttagatactaaaagttgagggtctttggatgcggttcaa 132  Q
    ||||||||| |||||  ||||| |||||| || |||| ||||||||| ||||||||||||||||||||||||| ||||||||||||||| || || ||||    
T  27015168 cccatttgt-gggtatgcttggcgaatctaatggaaatcaaaggagggaacttttagggttttagatactaaaggttgagggtctttgggtgaggatcaa 27015266  T
Q  133 agcttcaagatgtgaatcttggagaaccaaaagagggggctcttgggaaaagggttggtgcattttggggaaaattcataaggttggaaaacacatgagt 232  Q
    ||||||||||||||||||||| ||||||||||||||||||||||| ||||||||||||||| |||||||||| | ||||  |||||| ||||||||||||    
T  27015267 agcttcaagatgtgaatcttgaagaaccaaaagagggggctcttgtgaaaagggttggtgccttttggggaagaatcatggggttgggaaacacatgagt 27015366  T
Q  233 ggag 236  Q
    ||||    
T  27015367 ggag 27015370  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 118; E-Value: 3e-60
Query Start/End: Original strand, 19 - 237
Target Start/End: Complemental strand, 16642424 - 16642207
Alignment:
Q  19 taagcactccatgacccatttgttgggtaaacttggtgaatctcattgaaaccaaaggaggaaacttttagggt-tttagatactaaaagttgagggtct 117  Q
    |||||||||||||||||||||||||||||| ||||||||||||||| |||||||||||||   ||||||||||| ||||||||||||| ||||| |||||    
T  16642424 taagcactccatgacccatttgttgggtaagcttggtgaatctcatggaaaccaaaggagagcacttttagggtatttagatactaaaggttgatggtct 16642325  T
Q  118 ttggatgcggttcaaagcttcaagatgtgaatcttggagaaccaaaagagggggctcttgggaaaagggttggtgcattttgggga-aaattcataaggt 216  Q
    |||| || ||||||||||||||||| |||||||||| ||||||||||||  ||||||||||| ||||||||||||| ||||||||| | ||||||  |||    
T  16642324 ttgggtgaggttcaaagcttcaagaagtgaatcttgaagaaccaaaaga--gggctcttggg-aaagggttggtgccttttggggacagattcatggggt 16642228  T
Q  217 tggaaaacacatgagtggagt 237  Q
    | | |||||||||||||||||    
T  16642227 taggaaacacatgagtggagt 16642207  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 115; E-Value: 2e-58
Query Start/End: Original strand, 19 - 233
Target Start/End: Complemental strand, 27638161 - 27637949
Alignment:
Q  19 taagcactccatgacccatttgttgggtaaacttggtgaatctcattgaaaccaaaggaggaaacttttagggttttagatactaaaagttgagggtctt 118  Q
    ||||||||| ||||||||||||||    |  ||||||||||||||| |||||||||||||| |||||||| |||||||||||||||| ||||||  ||||    
T  27638161 taagcactctatgacccatttgttaaaaaggcttggtgaatctcatggaaaccaaaggagggaacttttaaggttttagatactaaaggttgagaatctt 27638062  T
Q  119 tggatgcggttcaaagcttcaagatgtgaatcttggagaaccaaaagagggggctcttgggaaaagggttggtgcattttggggaaaattcataaggttg 218  Q
    ||| || ||||||||| |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| ||||| ||||||  ||||     
T  27638061 tgggtgaggttcaaag-ttcaagatgtgaatcttggagaaccaaaagagggagctcttgggaaaagggttggtgcatttt-gggaagattcatggggtta 27637964  T
Q  219 gaaaacacatgagtg 233  Q
    | |||||||||||||    
T  27637963 ggaaacacatgagtg 27637949  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 99; E-Value: 6e-49
Query Start/End: Original strand, 19 - 228
Target Start/End: Original strand, 316380 - 316596
Alignment:
Q  19 taagcactccatgacccatttgttgggtaaacttggt------gaatctcattgaaaccaaaggaggaaacttttagggtt-ttagatactaaaagttga 111  Q
    |||||||||| |||||||||||||| |||| ||||||      ||||||||| ||||| |||||||  ||||||||  ||  |||||||||||| |||||    
T  316380 taagcactccttgacccatttgttgagtaagcttggtaatggtgaatctcatggaaactaaaggagagaacttttattgtacttagatactaaaggttga 316479  T
Q  112 gggtctttggatgcggttcaaagcttcaagatgtgaatcttggagaaccaaaagagggggctcttgggaaaagggttggtgcattttgggga-aaattca 210  Q
    |||||||||| || |||||||||||||||||||||||||||||||||||||||| ||||||||||||| | ||||||||||| ||||||||| | |||||    
T  316480 gggtctttgggtgaggttcaaagcttcaagatgtgaatcttggagaaccaaaagggggggctcttggg-agagggttggtgccttttggggagagattca 316578  T
Q  211 taaggttggaaaacacat 228  Q
    ||||||||| ||||||||    
T  316579 taaggttgggaaacacat 316596  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 94; E-Value: 6e-46
Query Start/End: Original strand, 19 - 187
Target Start/End: Original strand, 35615792 - 35615961
Alignment:
Q  19 taagcactccatgacccatttgttgggtaaacttggtgaatctcattgaaaccaaaggaggaaacttttagggt-tttagatactaaaagttgagggtct 117  Q
    |||||||||| |||   |||||||| |||| ||||||||||||| ||||||||||| ||  |||||||||| || ||||||||||||| |||||||||||    
T  35615792 taagcactccttgattaatttgttgcgtaagcttggtgaatctccttgaaaccaaatgaaaaaacttttagagtatttagatactaaaggttgagggtct 35615891  T
Q  118 ttggatgcggttcaaagcttcaagatgtgaatcttggagaaccaaaagagggggctcttgggaaaagggt 187  Q
    |||  || ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| ||||    
T  35615892 ttgagtgaggttcaaagcttcaagatgtgaatcttggagaaccaaaagaggggactcttgggaaaggggt 35615961  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 84; E-Value: 5e-40
Query Start/End: Original strand, 19 - 232
Target Start/End: Original strand, 30792861 - 30793073
Alignment:
Q  19 taagcactccatgacccatttgttgggtaaacttggtgaatctcattgaaaccaaaggaggaaacttttagggt-tttagatactaaaagttgagggtct 117  Q
    |||||||| | |||||||||||||  |||| ||||||||||||||| ||||||||| ||| |||||||||||||  |||||||||||| |||||||||||    
T  30792861 taagcacttcttgacccatttgttaagtaagcttggtgaatctcatggaaaccaaatgagtaaacttttagggtaattagatactaaaggttgagggtct 30792960  T
Q  118 ttggatgcggttcaaagcttcaagatgtgaatcttggagaaccaaaagagggggctcttgggaaaagggttggtgcattttgggga-aaattcataaggt 216  Q
    || | ||  |||||||||||||||||||  ||||||||||||||||| | | |||| ||||||||| ||||||||| ||||||||| | ||||||  |||    
T  30792961 ttaggtgatgttcaaagcttcaagatgt-tatcttggagaaccaaaatatgtggct-ttgggaaaa-ggttggtgccttttggggagatattcatggggt 30793057  T
Q  217 tggaaaacacatgagt 232  Q
    ||| ||||||||||||    
T  30793058 tgggaaacacatgagt 30793073  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 19 - 236
Target Start/End: Original strand, 30802562 - 30802779
Alignment:
Q  19 taagcactccatgacccatttgttgggtaaacttggtgaatctcattgaaaccaaaggaggaaacttttagggt-tttagatactaaaagttgagggtct 117  Q
    |||| ||||| ||| | |||||||| |||  ||||||||||||||| ||||||||| |||| |||||||||||| |||||||| |  | |||||||||||    
T  30802562 taagtactccttgatcgatttgttgagtacgcttggtgaatctcatggaaaccaaatgagggaacttttagggtatttagatattctaggttgagggtct 30802661  T
Q  118 ttggatgcggttcaaagcttcaagatgtgaatcttggagaaccaaaagagggggctcttgggaaaagggttggtgcattttgggga-aaattcataaggt 216  Q
    || | || |||||||||||||| |||||  ||||| ||||||||||||||| |||||||||| |||||||| |||| ||||||||| | ||||||  |||    
T  30802662 ttaggtgaggttcaaagcttcatgatgt-tatcttagagaaccaaaagaggaggctcttggg-aaagggtttgtgccttttggggagagattcatggggt 30802759  T
Q  217 tggaaaacacatgagtggag 236  Q
    | ||||||||||||||||||    
T  30802760 tagaaaacacatgagtggag 30802779  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 32 - 200
Target Start/End: Complemental strand, 14689942 - 14689774
Alignment:
Q  32 acccatttgttgggtaaacttggtgaatctcattgaaaccaaaggaggaaacttttagggt-tttagatactaaaagttgagggtctttggatgcggttc 130  Q
    |||||||||||| |||  ||||||||||||||| ||||| ||||||| ||||||||||||  |||||||| | || ||| ||||||||||  ||  ||||    
T  14689942 acccatttgttgagtaggcttggtgaatctcatggaaactaaaggagaaaacttttagggcatttagatagtgaaggttaagggtctttgagtgatgttc 14689843  T
Q  131 aaagcttcaagatgtgaatcttggagaaccaaaagagggggctcttgggaaaagggttggtgcattttgg 200  Q
    |||| |||||||||||||| |||||||||||||||| |||| ||||| | ||||||||||||| ||||||    
T  14689842 aaagtttcaagatgtgaattttggagaaccaaaagaaggggttcttgtg-aaagggttggtgccttttgg 14689774  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 35 - 232
Target Start/End: Complemental strand, 10055238 - 10055040
Alignment:
Q  35 catttgttgggtaaacttggtgaatctcattgaaaccaaaggaggaaacttttagggtt-ttagatactaaaagttgagggtctttggatgcggttcaaa 133  Q
    ||||||||| ||||  |||||||||||||| |||| |||| || | ||| ||||| ||  || |||||||||  |||| ||| ||||| || | ||||||    
T  10055238 catttgttgagtaagtttggtgaatctcatagaaatcaaatgatggaacatttagagtacttggatactaaagattgaaggtttttgggtgagattcaaa 10055139  T
Q  134 gcttcaagatgtgaatcttggagaaccaaaagagggggctcttgggaaaagggttggtgcattttgggga-aaattcataaggttggaaaacacatgagt 232  Q
    |||||||||||||||||||||||||||||||||| ||||||||||| ||||| ||||||| || |||||| | |||||   |||||| ||||||||||||    
T  10055138 gcttcaagatgtgaatcttggagaaccaaaagagagggctcttggg-aaaggtttggtgccttatggggagagattcacggggttgggaaacacatgagt 10055040  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 53 - 180
Target Start/End: Original strand, 4160289 - 4160416
Alignment:
Q  53 ggtgaatctcattgaaaccaaaggaggaaacttttagggt-tttagatactaaaagttgagggtctttggatgcggttcaaagcttcaagatgtgaatct 151  Q
    |||||||||||| ||||||||| |||  ||| |||||||| |||||||||||||  |||||||| ||||| ||  |||||||| || |||| |||||||     
T  4160289 ggtgaatctcatggaaaccaaatgagagaacatttagggtatttagatactaaagtttgagggt-tttgggtgatgttcaaagtttaaagaagtgaatcc 4160387  T
Q  152 tggagaaccaaaagagggggctcttggga 180  Q
    |||||||| ||||||||||||||||||||    
T  4160388 tggagaactaaaagagggggctcttggga 4160416  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 107 - 203
Target Start/End: Complemental strand, 33906487 - 33906392
Alignment:
Q  107 gttgagggtctttggatgcggttcaaagcttcaagatgtgaatcttggagaaccaaaagagggggctcttgggaaaagggttggtgcattttgggga 203  Q
    ||||||||||||||  || ||||| |||| |||| |||||||||||| |||||||||| |||||||||||||| | ||||||||||| |||||||||    
T  33906487 gttgagggtctttgagtgaggttcgaagcctcaaaatgtgaatcttgtagaaccaaaaaagggggctcttggg-agagggttggtgccttttgggga 33906392  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 19 - 119
Target Start/End: Complemental strand, 33906678 - 33906578
Alignment:
Q  19 taagcactccatgacccatttgttgggtaaacttggtgaatctcattgaaaccaaaggaggaaacttttagggt-tttagatactaaaagttgagggtct 117  Q
    |||||||||| | ||||||||||||   || |||||||||||||| ||||||||||| ||  |||||||||||| |||||||| |||| ||||||| |||    
T  33906678 taagcactccttaacccatttgttgaacaagcttggtgaatctca-tgaaaccaaagaagagaacttttagggtatttagatattaaaggttgaggttct 33906580  T
Q  118 tt 119  Q
    ||    
T  33906579 tt 33906578  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0466 (Bit Score: 163; Significance: 4e-87; HSPs: 1)
Name: scaffold0466
Description:

Target: scaffold0466; HSP #1
Raw Score: 163; E-Value: 4e-87
Query Start/End: Original strand, 30 - 236
Target Start/End: Original strand, 6960 - 7166
Alignment:
Q  30 tgacccatttgttgggtaaacttggtgaatctcattgaaaccaaaggaggaaacttttagggttttagatactaaaagttgagggtctttggatgcggtt 129  Q
    ||||||||||||||||||| ||||||||||||||| |||||||||||||| ||||||||||||||||||||||||| ||||||||||||||| || ||||    
T  6960 tgacccatttgttgggtaagcttggtgaatctcatggaaaccaaaggagggaacttttagggttttagatactaaaggttgagggtctttgggtgaggtt 7059  T
Q  130 caaagcttcaagatgtgaatcttggagaaccaaaagagggggctcttgggaaaagggttggtgcattttggggaaaattcataaggttggaaaacacatg 229  Q
    |||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |||||||||| ||||||  ||||||||||||||||    
T  7060 caaagcttcaagatgtgaatcttggagaaccaaaagagggggctcttgtgaaaagggttggtgccttttggggaagattcatggggttggaaaacacatg 7159  T
Q  230 agtggag 236  Q
    |||||||    
T  7160 agtggag 7166  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 159; Significance: 9e-85; HSPs: 20)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 159; E-Value: 9e-85
Query Start/End: Original strand, 19 - 233
Target Start/End: Original strand, 6431592 - 6431806
Alignment:
Q  19 taagcactccatgacccatttgttgggtaaacttggtgaatctcattgaaaccaaaggaggaaacttttagggttttagatactaaaagttgagggtctt 118  Q
    ||||| ||||||||||||||| |||||||| ||||||||||||||| |||||||||||||| ||||||||||||||||||||||||| ||||||||||||    
T  6431592 taagcgctccatgacccatttattgggtaagcttggtgaatctcatagaaaccaaaggagggaacttttagggttttagatactaaaggttgagggtctt 6431691  T
Q  119 tggatgcggttcaaagcttcaagatgtgaatcttggagaaccaaaagagggggctcttgggaaaagggttggtgcattttggggaaaattcataaggttg 218  Q
    ||| || |||||||| ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |||||||||| ||||||  |||||    
T  6431692 tgggtgaggttcaaaacttcaagatgtgaatcttggagaaccaaaagagggggctcttggggaaagggttggtgccttttggggaagattcatggggttg 6431791  T
Q  219 gaaaacacatgagtg 233  Q
    |||||||||||||||    
T  6431792 gaaaacacatgagtg 6431806  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 153; E-Value: 3e-81
Query Start/End: Original strand, 15 - 211
Target Start/End: Complemental strand, 32358387 - 32358191
Alignment:
Q  15 tatgtaagcactccatgacccatttgttgggtaaacttggtgaatctcattgaaaccaaaggaggaaacttttagggttttagatactaaaagttgaggg 114  Q
    |||||||||||||||||||||||||||||   || ||||||||||||||| |||||||||||||| ||||||||||||||||||||||||| ||||||||    
T  32358387 tatgtaagcactccatgacccatttgttgaaaaagcttggtgaatctcatggaaaccaaaggagggaacttttagggttttagatactaaaggttgaggg 32358288  T
Q  115 tctttggatgcggttcaaagcttcaagatgtgaatcttggagaaccaaaagagggggctcttgggaaaagggttggtgcattttggggaaaattcat 211  Q
    ||||||| || |||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |||||||||||||||||    
T  32358287 tctttgggtgaggttcaaagcttcaagatgtgaatcttggagaaccaaaagagggggctcttgtgaaaagggttggtgccttttggggaaaattcat 32358191  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 146; E-Value: 5e-77
Query Start/End: Original strand, 19 - 236
Target Start/End: Complemental strand, 4512936 - 4512720
Alignment:
Q  19 taagcactccatgacccatttgttgggtaaacttggtgaatctcattgaaaccaaaggaggaaacttttagggttttagatactaaaagttgagggtctt 118  Q
    |||||||||||||||||||||  ||||||| ||||||||||||||| |||||||||||||| ||||||||||||||||||| ||||| ||||||||||||    
T  4512936 taagcactccatgacccatttaatgggtaagcttggtgaatctcatggaaaccaaaggagggaacttttagggttttagattctaaaggttgagggtctt 4512837  T
Q  119 tggatgcggttcaaagcttcaagatgtgaatcttggagaaccaaaagagggggctcttgggaaaagggttggtgcattttggggaaaattcataaggttg 218  Q
    ||| || ||||||||||||||||||||||||||| |||||||||||||||||||||||||| ||||||||||||| |||||||||| ||||||  ||||     
T  4512836 tgggtgaggttcaaagcttcaagatgtgaatcttagagaaccaaaagagggggctcttggg-aaagggttggtgccttttggggaagattcatggggttt 4512738  T
Q  219 gaaaacacatgagtggag 236  Q
    | ||||||||||||||||    
T  4512737 ggaaacacatgagtggag 4512720  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 141; E-Value: 5e-74
Query Start/End: Original strand, 47 - 235
Target Start/End: Original strand, 2389931 - 2390119
Alignment:
Q  47 aaacttggtgaatctcattgaaaccaaaggaggaaacttttagggttttagatactaaaagttgagggtctttggatgcggttcaaagcttcaagatgtg 146  Q
    |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| ||||||||||||||| || |||||||||||||||||||||    
T  2389931 aaacttggtgaatctcatggaaaccaaaggaggaaacttttagggttttagatactaaaggttgagggtctttgggtgaggttcaaagcttcaagatgtg 2390030  T
Q  147 aatcttggagaaccaaaagagggggctcttgggaaaagggttggtgcattttggggaaaattcataaggttggaaaacacatgagtgga 235  Q
    ||||||||| ||||||||||||||||| ||| ||||||||||||||  |||||||||| ||||||  ||||||||||||||||||||||    
T  2390031 aatcttggaaaaccaaaagagggggctattgcgaaaagggttggtggcttttggggaagattcatggggttggaaaacacatgagtgga 2390119  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 139; E-Value: 8e-73
Query Start/End: Original strand, 19 - 236
Target Start/End: Complemental strand, 34311264 - 34311046
Alignment:
Q  19 taagcactccatgacccatttgttgggtaaacttggtgaatctcattgaaaccaaaggaggaaacttttagggttt-tagatactaaaagttgagggtct 117  Q
    |||| ||||||||||| |||| |||||||| ||||||||||||||| |||||||||||| | |||||||||||| | ||||||||||| ||||||||||     
T  34311264 taagtactccatgaccaattttttgggtaagcttggtgaatctcatggaaaccaaaggaaggaacttttagggtatgtagatactaaaggttgagggtcc 34311165  T
Q  118 ttggatgcggttcaaagcttcaagatgtgaatcttggagaaccaaaagagggggctcttgggaaaagggttggtgcattttggggaaaattcataaggtt 217  Q
    |||| || |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||  |||||  || |    
T  34311164 ttgggtgaggttcaaagcttcaagatgtgaatcttggagaaccaaaagagggggctcttgggaaaagggttggtgccttttggggaaggttcatggggat 34311065  T
Q  218 ggaaaacacatgagtggag 236  Q
    |||||||||||||||||||    
T  34311064 ggaaaacacatgagtggag 34311046  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 123; E-Value: 3e-63
Query Start/End: Original strand, 19 - 236
Target Start/End: Original strand, 3258616 - 3258834
Alignment:
Q  19 taagcactccatgacccatttgttgggtaaacttggtgaatctcattgaaaccaaaggaggaaacttttagggttt-tagatactaaaagttgagggtct 117  Q
    ||||||||| |||||||||||| ||   |||||||||||||||||| ||||||| |||||| |||||||||||| | ||||||||||| |||||||||||    
T  3258616 taagcactctatgacccatttggtgaaaaaacttggtgaatctcatggaaaccagaggagggaacttttagggtatgtagatactaaaggttgagggtct 3258715  T
Q  118 ttggatgcggttcaaagcttcaagatgtgaatcttggagaaccaaaagagggggctcttgggaaaagggttggtgcattttggggaaaattcataaggtt 217  Q
    |||| || |||||||||||||| ||||||||||||||||||| |||||| |||||||||||||||||||||||||| |||||||||| ||||||  || |    
T  3258716 ttgggtgaggttcaaagcttcatgatgtgaatcttggagaacaaaaagatggggctcttgggaaaagggttggtgccttttggggaagattcatggggat 3258815  T
Q  218 ggaaaacacatgagtggag 236  Q
    || ||||| ||||||||||    
T  3258816 gggaaacatatgagtggag 3258834  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 123; E-Value: 3e-63
Query Start/End: Original strand, 30 - 236
Target Start/End: Complemental strand, 6360448 - 6360242
Alignment:
Q  30 tgacccatttgttgggtaaacttggtgaatctcattgaaaccaaaggaggaaacttttagggttttagatactaaaagttgagggtctttggatgcggtt 129  Q
    ||||||||||||||||||| ||||||||||||||| |||||||||||||  |||||||||||||||||||| |||| ||||||||||||||| || ||||    
T  6360448 tgacccatttgttgggtaagcttggtgaatctcatggaaaccaaaggagagaacttttagggttttagatattaaaggttgagggtctttgggtgaggtt 6360349  T
Q  130 caaagcttcaagatgtgaatcttggagaaccaaaagagggggctcttgggaaaagggttggtgcattttggggaaaattcataaggttggaaaacacatg 229  Q
     |||| |||||||||||||||||||||||||||||||||||||||||| |||||||  |||||| |||||  ||| ||||||   |||| ||||||||||    
T  6360348 aaaagtttcaagatgtgaatcttggagaaccaaaagagggggctcttgagaaaaggaatggtgccttttgaagaagattcatggagttgaaaaacacatg 6360249  T
Q  230 agtggag 236  Q
    |||||||    
T  6360248 agtggag 6360242  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 123; E-Value: 3e-63
Query Start/End: Original strand, 50 - 236
Target Start/End: Original strand, 29608393 - 29608574
Alignment:
Q  50 cttggtgaatctcattgaaaccaaaggaggaaacttttagggttttagatactaaaagttgagggtctttggatgcggttcaaagcttcaagatgtgaat 149  Q
    ||||||||||||||| |||||||||||||| ||||||||||||||||||||||||| ||||||||||||||| || |||||||| |||||||||||||||    
T  29608393 cttggtgaatctcatggaaaccaaaggagggaacttttagggttttagatactaaaggttgagggtctttgggtgaggttcaaaacttcaagatgtgaat 29608492  T
Q  150 cttggagaaccaaaagagggggctcttgggaaaagggttggtgcattttggggaaaattcataaggttggaaaacacatgagtggag 236  Q
    |||||||||||||||||||||||||||| ||||||||||||||| ||||||     ||||||  |||||| ||||||||||||||||    
T  29608493 cttggagaaccaaaagagggggctcttgtgaaaagggttggtgccttttgg-----attcatggggttgggaaacacatgagtggag 29608574  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 119; E-Value: 7e-61
Query Start/End: Original strand, 30 - 236
Target Start/End: Complemental strand, 2361507 - 2361301
Alignment:
Q  30 tgacccatttgttgggtaaacttggtgaatctcattgaaaccaaaggaggaaacttttagggttttagatactaaaagttgagggtctttggatgcggtt 129  Q
    |||||||||||||||| || ||| ||||||||||| |||||||||||||| |||||||||| ||||||||||||||  |||||||||||||| || | ||    
T  2361507 tgacccatttgttgggcaagcttagtgaatctcatggaaaccaaaggagggaacttttaggattttagatactaaagattgagggtctttgggtgagatt 2361408  T
Q  130 caaagcttcaagatgtgaatcttggagaaccaaaagagggggctcttgggaaaagggttggtgcattttggggaaaattcataaggttggaaaacacatg 229  Q
    |||  ||||||||||||||||||| |||| |||||||||||||||||| ||||||||||||||| |||||||||  ||||||  |||||| |||||||||    
T  2361407 caatccttcaagatgtgaatcttgaagaatcaaaagagggggctcttgtgaaaagggttggtgccttttggggatgattcatggggttgggaaacacatg 2361308  T
Q  230 agtggag 236  Q
    |||||||    
T  2361307 agtggag 2361301  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 118; E-Value: 3e-60
Query Start/End: Original strand, 32 - 232
Target Start/End: Complemental strand, 48599858 - 48599668
Alignment:
Q  32 acccatttgttgggtaaacttggtgaatctcattgaaaccaaaggaggaaacttttagggttttagatactaaaagttgagggtctttggatgcggttca 131  Q
    ||||||||||||||||| ||||||||||||||| |||||||||||||| ||||||||||||||||||||||||| ||||||||||||||| || ||||||    
T  48599858 acccatttgttgggtaagcttggtgaatctcatggaaaccaaaggagggaacttttagggttttagatactaaaggttgagggtctttgggtgaggttca 48599759  T
Q  132 aagcttcaagatgtgaatcttggagaaccaaaagagggggctcttgggaaaagggttggtgcattttggggaaaattcataaggttggaaaacacatgag 231  Q
    ||||||||||||||          |||||||||||||||||||||| ||||||||||||||| |||||||||| ||||||  |||||||||| |||||||    
T  48599758 aagcttcaagatgt----------gaaccaaaagagggggctcttgtgaaaagggttggtgccttttggggaagattcatggggttggaaaaaacatgag 48599669  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 117; E-Value: 1e-59
Query Start/End: Original strand, 19 - 236
Target Start/End: Complemental strand, 4509244 - 4509036
Alignment:
Q  19 taagcactccatgacccatttgttgggtaaacttggtgaatctcattgaaaccaaaggaggaaacttttagggttttagatactaaaagttgagggtctt 118  Q
    ||||||||| |||||||||||||||||||| |||||| |||||||| |||||||||||| | ||||||||||||||||||||||||| ||||||||| ||    
T  4509244 taagcactctatgacccatttgttgggtaagcttggttaatctcatggaaaccaaaggatggaacttttagggttttagatactaaaggttgagggtttt 4509145  T
Q  119 tggatgcggttcaaagcttcaagatgtgaatcttggagaaccaaaagagggggctcttgggaaaagggttggtgcattttggggaaaattcataaggttg 218  Q
    ||| || ||||||||||||||||||||        |||||||||||||||| ||||||||| ||||||||||||| |||||||||| ||||||  |||||    
T  4509144 tgggtgaggttcaaagcttcaagatgt--------gagaaccaaaagagggagctcttggg-aaagggttggtgccttttggggaagattcatggggttg 4509054  T
Q  219 gaaaacacatgagtggag 236  Q
    | ||||||||||||||||    
T  4509053 ggaaacacatgagtggag 4509036  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 117; E-Value: 1e-59
Query Start/End: Original strand, 19 - 236
Target Start/End: Complemental strand, 4511086 - 4510878
Alignment:
Q  19 taagcactccatgacccatttgttgggtaaacttggtgaatctcattgaaaccaaaggaggaaacttttagggttttagatactaaaagttgagggtctt 118  Q
    ||||||||| |||||||||||||||||||| |||||| |||||||| |||||||||||| | ||||||||||||||||||||||||| ||||||||| ||    
T  4511086 taagcactctatgacccatttgttgggtaagcttggttaatctcatggaaaccaaaggatggaacttttagggttttagatactaaaggttgagggtttt 4510987  T
Q  119 tggatgcggttcaaagcttcaagatgtgaatcttggagaaccaaaagagggggctcttgggaaaagggttggtgcattttggggaaaattcataaggttg 218  Q
    ||| || ||||||||||||||||||||        |||||||||||||||| ||||||||| ||||||||||||| |||||||||| ||||||  |||||    
T  4510986 tgggtgaggttcaaagcttcaagatgt--------gagaaccaaaagagggagctcttggg-aaagggttggtgccttttggggaagattcatggggttg 4510896  T
Q  219 gaaaacacatgagtggag 236  Q
    | ||||||||||||||||    
T  4510895 ggaaacacatgagtggag 4510878  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 115; E-Value: 2e-58
Query Start/End: Original strand, 19 - 236
Target Start/End: Original strand, 22269595 - 22269811
Alignment:
Q  19 taagcactccatgacccatttgttgggtaaacttggtgaatctcattgaaaccaaaggaggaaacttttagggttt-tagatactaaaagttgagggtct 117  Q
    |||||||| |||||||||||||||||| || ||||||||||||||| |||||||||||||| ||| |||||||| | |||||||||||  ||||||||||    
T  22269595 taagcacttcatgacccatttgttgggcaagcttggtgaatctcatggaaaccaaaggagggaacatttagggtatgtagatactaaagtttgagggtct 22269694  T
Q  118 ttggatgcggttcaaagcttcaagatgtgaatcttggagaaccaaaagagggggctcttgggaaaagggttggtgcattttggggaaaattcataaggtt 217  Q
    |||| || ||||||||||| ||||||||||||||||||||||||||||| |||||||||||| |||| |||||||| |||||||||| ||||||  ||      
T  22269695 ttgggtgaggttcaaagctacaagatgtgaatcttggagaaccaaaaga-ggggctcttggg-aaagagttggtgccttttggggaagattcatggggag 22269792  T
Q  218 ggaaaacacatgagtggag 236  Q
    || ||||||||||||||||    
T  22269793 gggaaacacatgagtggag 22269811  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 104; E-Value: 6e-52
Query Start/End: Original strand, 35 - 232
Target Start/End: Complemental strand, 22328931 - 22328732
Alignment:
Q  35 catttgttgggtaaacttggtgaatctcattgaaaccaaaggaggaaacttttagggt-tttagatactaaaagttgagggtctttggatgcggttcaaa 133  Q
    ||||||||  |||| ||| ||||||||||| ||||||||||||| ||||||||||||| ||||||||||||| ||||||| |||||||  | |||| |||    
T  22328931 catttgttaagtaagcttagtgaatctcatggaaaccaaaggagaaaacttttagggtatttagatactaaaggttgaggatctttggtggaggttaaaa 22328832  T
Q  134 gcttcaagatgtgaatcttggagaaccaaaagagggggctcttgggaaaagggttggtgcattttgggga-aaattcataaggttggaaaacacatgagt 232  Q
    |||||||||||| |||||||||||||||||||||||||||||| ||||||| |||||||| ||||||||| | ||||||| |||||| ||| ||||||||    
T  22328831 gcttcaagatgtaaatcttggagaaccaaaagagggggctcttaggaaaagagttggtgccttttggggagagattcatagggttgggaaaaacatgagt 22328732  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 81; E-Value: 3e-38
Query Start/End: Original strand, 30 - 138
Target Start/End: Original strand, 30814397 - 30814505
Alignment:
Q  30 tgacccatttgttgggtaaacttggtgaatctcattgaaaccaaaggaggaaacttttagggttttagatactaaaagttgagggtctttggatgcggtt 129  Q
    ||||||||||||||||||| ||||||||||||||| |||||||||||||| |||||||||||||||||||||| || ||||||||||||||| || ||||    
T  30814397 tgacccatttgttgggtaagcttggtgaatctcatggaaaccaaaggagggaacttttagggttttagatacttaaggttgagggtctttgggtgaggtt 30814496  T
Q  130 caaagcttc 138  Q
    |||||||||    
T  30814497 caaagcttc 30814505  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 72; E-Value: 7e-33
Query Start/End: Original strand, 54 - 180
Target Start/End: Original strand, 5116290 - 5116417
Alignment:
Q  54 gtgaatctcattgaaaccaaaggaggaaacttttagggt-tttagatactaaaagttgagggtctttggatgcggttcaaagcttcaagatgtgaatctt 152  Q
    ||||||||||| || |||||||||||  ||||||||||| |||| |||||||| ||||||||||||| | ||  ||||||| ||||||||||||||||||    
T  5116290 gtgaatctcatggataccaaaggaggggacttttagggtatttaaatactaaaggttgagggtctttaggtgatgttcaaaacttcaagatgtgaatctt 5116389  T
Q  153 ggagaaccaaaagagggggctcttggga 180  Q
     |||||||||||||||||||||||||||    
T  5116390 tgagaaccaaaagagggggctcttggga 5116417  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 107 - 201
Target Start/End: Complemental strand, 22552896 - 22552804
Alignment:
Q  107 gttgagggtctttggatgcggttcaaagcttcaagatgtgaatcttggagaaccaaaagagggggctcttgggaaaagggttggtgcattttggg 201  Q
    ||||||||||||||| || | || ||||  |||| ||||||||||| |||||||||||||||||||||||||  ||| ||||||||| |||||||    
T  22552896 gttgagggtctttgggtgagatttaaagggtcaaaatgtgaatcttagagaaccaaaagagggggctcttgg--aaacggttggtgccttttggg 22552804  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 181 - 236
Target Start/End: Complemental strand, 8359703 - 8359648
Alignment:
Q  181 aaagggttggtgcattttggggaaaattcataaggttggaaaacacatgagtggag 236  Q
    ||||||||||||| |||||||||| ||||||  |||||| ||||||||||||||||    
T  8359703 aaagggttggtgccttttggggaagattcatggggttgggaaacacatgagtggag 8359648  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 94 - 164
Target Start/End: Complemental strand, 37545379 - 37545308
Alignment:
Q  94 ttagatactaaaagttgaggg-tctttggatgcggttcaaagcttcaagatgtgaatcttggagaaccaaaa 164  Q
    ||||| ||||||||||||| | |||||||||  | ||||||| || ||||||||||||||||||||||||||    
T  37545379 ttagagactaaaagttgagagatctttggataagattcaaaggtttaagatgtgaatcttggagaaccaaaa 37545308  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 101 - 180
Target Start/End: Complemental strand, 43363877 - 43363798
Alignment:
Q  101 ctaaaagttgagggtctttggatgcggttcaaagcttcaagatgtgaatcttggagaaccaaaagagggggctcttggga 180  Q
    |||| |||||||  ||||||| |||  ||||||  || |||||||| |||||||||||| ||||||||| ||||||||||    
T  43363877 ctaagagttgagtttctttgggtgcaattcaaatgttgaagatgtgtatcttggagaactaaaagagggagctcttggga 43363798  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 158; Significance: 4e-84; HSPs: 36)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 158; E-Value: 4e-84
Query Start/End: Original strand, 15 - 236
Target Start/End: Original strand, 26363882 - 26364103
Alignment:
Q  15 tatgtaagcactccatgacccatttgttgggtaaacttggtgaatctcattgaaaccaaaggaggaaacttttagggttttagatactaaaagttgaggg 114  Q
    |||||||||||||||||||||||||||||||||| ||||||||||||||| |||||||| ||||| ||||||||||||||||||||||||| ||||||||    
T  26363882 tatgtaagcactccatgacccatttgttgggtaagcttggtgaatctcatggaaaccaagggagggaacttttagggttttagatactaaaggttgaggg 26363981  T
Q  115 tctttggatgcggttcaaagcttcaagatgtgaatcttggagaaccaaaagagggggctcttgggaaaagggttggtgcattttggggaaaattcataag 214  Q
     |||||| || |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| || |||||| ||| ||||||  |    
T  26363982 cctttgggtgaggttcaaagcttcaagatgtgaatcttggagaaccaaaagagggggctcttgtgaaaagggttggggccttttggagaagattcatggg 26364081  T
Q  215 gttggaaaacacatgagtggag 236  Q
    ||||| ||||||||||||||||    
T  26364082 gttgggaaacacatgagtggag 26364103  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 155; E-Value: 2e-82
Query Start/End: Original strand, 19 - 236
Target Start/End: Original strand, 8665027 - 8665245
Alignment:
Q  19 taagcactccatgacccattt-gttgggtaaacttggtgaatctcattgaaaccaaaggaggaaacttttagggttttagatactaaaagttgagggtct 117  Q
    ||||||||||||||||||||| ||| ||||| ||||||||||||||| |||||||||||||  ||||||||||||||||||||||||| |||||||||||    
T  8665027 taagcactccatgacccattttgttaggtaagcttggtgaatctcatggaaaccaaaggagagaacttttagggttttagatactaaaggttgagggtct 8665126  T
Q  118 ttggatgcggttcaaagcttcaagatgtgaatcttggagaaccaaaagagggggctcttgggaaaagggttggtgcattttggggaaaattcataaggtt 217  Q
    |||| || |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| ||||||  ||||    
T  8665127 ttgggtgaggttcaaagcttcaagatgtgaatcttggagaaccaaaagagggggctcttgggaaaagggttggtgccttttggggaagattcatggggtt 8665226  T
Q  218 ggaaaacacatgagtggag 236  Q
    || ||||||| ||||||||    
T  8665227 gggaaacacaggagtggag 8665245  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 154; E-Value: 9e-82
Query Start/End: Original strand, 19 - 236
Target Start/End: Complemental strand, 27417498 - 27417281
Alignment:
Q  19 taagcactccatgacccatttgttgggtaaacttggtgaatctcattgaaaccaaaggaggaaacttttagggttttagatactaaaagttgagggtctt 118  Q
    |||||||||||||||||||||||||||||| |||||||||||||||  ||||||||||||| ||||||||||||||||||||||||| ||||||||||||    
T  27417498 taagcactccatgacccatttgttgggtaagcttggtgaatctcatgaaaaccaaaggagggaacttttagggttttagatactaaaggttgagggtctt 27417399  T
Q  119 tggatgcggttcaaagcttcaagatgtgaatcttggagaaccaaaagagggggctcttgggaaaagggttggtgcattttggggaaaattcataaggttg 218  Q
    ||| || |||||||||||| |||||||||||||||||||||||||||| ||||||||||||||| |||||||||  |||||||||| ||||||  |||||    
T  27417398 tgggtgaggttcaaagctttaagatgtgaatcttggagaaccaaaagaaggggctcttgggaaaggggttggtgtcttttggggaagattcatggggttg 27417299  T
Q  219 gaaaacacatgagtggag 236  Q
    | ||||||||||||||||    
T  27417298 ggaaacacatgagtggag 27417281  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 151; E-Value: 5e-80
Query Start/End: Original strand, 30 - 236
Target Start/End: Original strand, 40630616 - 40630822
Alignment:
Q  30 tgacccatttgttgggtaaacttggtgaatctcattgaaaccaaaggaggaaacttttagggttttagatactaaaagttgagggtctttggatgcggtt 129  Q
    ||||||||||||||||||| ||||||||||||||| |||||||||||| ||||||||||||||||||||||||||| ||||||||||||||| || ||||    
T  40630616 tgacccatttgttgggtaagcttggtgaatctcatggaaaccaaaggatgaaacttttagggttttagatactaaaggttgagggtctttgggtgaggtt 40630715  T
Q  130 caaagcttcaagatgtgaatcttggagaaccaaaagagggggctcttgggaaaagggttggtgcattttggggaaaattcataaggttggaaaacacatg 229  Q
    |||||||||||||||||||||||||||||||||||||||| ||| ||| ||||||||||||||| |||||||||| ||||||  |||||| |||||||||    
T  40630716 caaagcttcaagatgtgaatcttggagaaccaaaagagggagcttttgtgaaaagggttggtgccttttggggaagattcatggggttgggaaacacatg 40630815  T
Q  230 agtggag 236  Q
    |||||||    
T  40630816 agtggag 40630822  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 144; E-Value: 8e-76
Query Start/End: Original strand, 30 - 236
Target Start/End: Complemental strand, 55085902 - 55085695
Alignment:
Q  30 tgacccatttgttgggtaaacttggtgaatctcattgaaaccaaaggaggaaacttttagggttttagatactaaaagttgagggtctttggatgcggtt 129  Q
    ||||||||||||||||||| |||||||||||||| ||||||||||||||| ||||||||||||||||||||||||| ||||||||||||||| || ||||    
T  55085902 tgacccatttgttgggtaagcttggtgaatctcaatgaaaccaaaggagggaacttttagggttttagatactaaaggttgagggtctttgggtgaggtt 55085803  T
Q  130 caaagc-ttcaagatgtgaatcttggagaaccaaaagagggggctcttgggaaaagggttggtgcattttggggaaaattcataaggttggaaaacacat 228  Q
     ||||| |||||||||| ||||||||||||||||||||||||||||||||| ||||||||||||| |||||||||| ||||||  |||||| ||||||||    
T  55085802 aaaagctttcaagatgtaaatcttggagaaccaaaagagggggctcttggggaaagggttggtgccttttggggaagattcatggggttgggaaacacat 55085703  T
Q  229 gagtggag 236  Q
    ||||||||    
T  55085702 gagtggag 55085695  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 143; E-Value: 3e-75
Query Start/End: Original strand, 30 - 236
Target Start/End: Original strand, 2209340 - 2209546
Alignment:
Q  30 tgacccatttgttgggtaaacttggtgaatctcattgaaaccaaaggaggaaacttttagggttttagatactaaaagttgagggtctttggatgcggtt 129  Q
    ||||||||||||||||||| ||||||||||||||| |||| |||| |||| |||||||||||||||||||||||||  |||||||||||||| || ||||    
T  2209340 tgacccatttgttgggtaagcttggtgaatctcatggaaagcaaatgagggaacttttagggttttagatactaaagattgagggtctttgggtgaggtt 2209439  T
Q  130 caaagcttcaagatgtgaatcttggagaaccaaaagagggggctcttgggaaaagggttggtgcattttggggaaaattcataaggttggaaaacacatg 229  Q
    |||||||||||||||||||||||||||||||||| |||||| |||||||||||||||||||||| |||||||||| ||||||  |||||| |||||||||    
T  2209440 caaagcttcaagatgtgaatcttggagaaccaaacgaggggactcttgggaaaagggttggtgccttttggggaagattcatggggttgggaaacacatg 2209539  T
Q  230 agtggag 236  Q
    |||||||    
T  2209540 agtggag 2209546  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 143; E-Value: 3e-75
Query Start/End: Original strand, 30 - 236
Target Start/End: Original strand, 6655588 - 6655794
Alignment:
Q  30 tgacccatttgttgggtaaacttggtgaatctcattgaaaccaaaggaggaaacttttagggttttagatactaaaagttgagggtctttggatgcggtt 129  Q
    ||||||||||||||||||| |||||| |||||||| |||||||||||||| ||||||||||||||||||||||||| ||||||||||||||| || ||||    
T  6655588 tgacccatttgttgggtaagcttggtaaatctcatggaaaccaaaggagggaacttttagggttttagatactaaaggttgagggtctttgggtgaggtt 6655687  T
Q  130 caaagcttcaagatgtgaatcttggagaaccaaaagagggggctcttgggaaaagggttggtgcattttggggaaaattcataaggttggaaaacacatg 229  Q
    |||| ||| ||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |||||| ||| ||||||  |||||| |||||||||    
T  6655688 caaaactttaagatgtgaatcttggagaaccaaaagagggggctcttggggaaagggttggtgccttttggagaagattcatggggttgggaaacacatg 6655787  T
Q  230 agtggag 236  Q
    |||||||    
T  6655788 agtggag 6655794  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 141; E-Value: 5e-74
Query Start/End: Original strand, 15 - 235
Target Start/End: Complemental strand, 46570097 - 46569877
Alignment:
Q  15 tatgtaagcactccatgacccatttgttgggtaaacttggtgaatctcattgaaaccaaaggaggaaacttttagggttttagatactaaaagttgaggg 114  Q
    ||||||||||| ||||||||||||||||||| || ||||||||||||||| |||||||||||||| || |||||||||||||||||||||| ||||| ||    
T  46570097 tatgtaagcacaccatgacccatttgttgggcaagcttggtgaatctcatggaaaccaaaggagggaaattttagggttttagatactaaatgttgaagg 46569998  T
Q  115 tctttggatgcggttcaaagcttcaagatgtgaatcttggagaaccaaaagagggggctcttgggaaaagggttggtgcattttggggaaaattcataag 214  Q
    ||||| | || |||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| ||||||| ||||||| || ||||||  |    
T  46569997 tctttaggtgaggttcaaagcttcaagatgtgaatcttggagaaccaaaagagggggctcttgtgaaaaggattggtgccttttgggaaagattcatggg 46569898  T
Q  215 gttggaaaacacatgagtgga 235  Q
    ||||| ||||| |||||||||    
T  46569897 gttgggaaacaaatgagtgga 46569877  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 136; E-Value: 5e-71
Query Start/End: Original strand, 30 - 233
Target Start/End: Original strand, 54882652 - 54882855
Alignment:
Q  30 tgacccatttgttgggtaaacttggtgaatctcattgaaaccaaaggaggaaacttttagggttttagatactaaaagttgagggtctttggatgcggtt 129  Q
    |||| |||||||||||||| ||| ||||||||||| |||||||||||||| ||||||||||||||||||||||||| ||||||||||||||| || ||||    
T  54882652 tgactcatttgttgggtaagcttagtgaatctcatggaaaccaaaggagggaacttttagggttttagatactaaaggttgagggtctttgggtgaggtt 54882751  T
Q  130 caaagcttcaagatgtgaatcttggagaaccaaaagagggggctcttgggaaaagggttggtgcattttggggaaaattcataaggttggaaaacacatg 229  Q
    ||||||||||| |||||||||||||||||||||||||||||||||||  ||||||||||||||| |||||| ||| ||||||  |||||| |||||||||    
T  54882752 caaagcttcaaaatgtgaatcttggagaaccaaaagagggggctcttatgaaaagggttggtgccttttggagaagattcatggggttgggaaacacatg 54882851  T
Q  230 agtg 233  Q
    ||||    
T  54882852 agtg 54882855  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 135; E-Value: 2e-70
Query Start/End: Original strand, 30 - 236
Target Start/End: Complemental strand, 50674382 - 50674176
Alignment:
Q  30 tgacccatttgttgggtaaacttggtgaatctcattgaaaccaaaggaggaaacttttagggttttagatactaaaagttgagggtctttggatgcggtt 129  Q
    ||||||||||||||||||| ||||||||||||||| |||||||||||||| |||||||||||||||| |||||||| ||| ||||||||||| || ||||    
T  50674382 tgacccatttgttgggtaagcttggtgaatctcatggaaaccaaaggagggaacttttagggttttaaatactaaatgttaagggtctttgggtgaggtt 50674283  T
Q  130 caaagcttcaagatgtgaatcttggagaaccaaaagagggggctcttgggaaaagggttggtgcattttggggaaaattcataaggttggaaaacacatg 229  Q
    ||||||||||||||||||||||||||||||||||||||||||||||   ||||||||||||||| || |||| || ||||||  |||||| |||||||||    
T  50674282 caaagcttcaagatgtgaatcttggagaaccaaaagagggggctctaatgaaaagggttggtgccttatgggaaagattcatggggttgggaaacacatg 50674183  T
Q  230 agtggag 236  Q
    |||||||    
T  50674182 agtggag 50674176  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 134; E-Value: 7e-70
Query Start/End: Original strand, 19 - 236
Target Start/End: Complemental strand, 50263245 - 50263028
Alignment:
Q  19 taagcactccatgacccatttgttgggtaaacttggtgaatctcattgaaaccaaaggaggaaacttttagggttttagatactaaaagttgagggtctt 118  Q
    |||||||||  ||||||||||||||   ||  ||||||||||||||  ||||||||||||| |||||||||||||||||| |||||| |||||| |||||    
T  50263245 taagcactctttgacccatttgttgaaaaagtttggtgaatctcatgaaaaccaaaggagggaacttttagggttttagacactaaaggttgagagtctt 50263146  T
Q  119 tggatgcggttcaaagcttcaagatgtgaatcttggagaaccaaaagagggggctcttgggaaaagggttggtgcattttggggaaaattcataaggttg 218  Q
    ||| || ||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |||||||||| ||||||  |||||    
T  50263145 tgggtgaggttcaaagcttcaagatgtgaatcttggagaaccaaaagagggggctcttggaaaaagggttggtgccttttggggaagattcatggggttg 50263046  T
Q  219 gaaaacacatgagtggag 236  Q
    | ||||||||||||||||    
T  50263045 ggaaacacatgagtggag 50263028  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 126; E-Value: 4e-65
Query Start/End: Original strand, 19 - 183
Target Start/End: Original strand, 8653220 - 8653385
Alignment:
Q  19 taagcactccatgacccattt-gttgggtaaacttggtgaatctcattgaaaccaaaggaggaaacttttagggttttagatactaaaagttgagggtct 117  Q
    ||||||||||||||||||||| ||| ||||| ||||||||||||||| |||||||||||||  ||||||||||||||||||||||||| |||||||||||    
T  8653220 taagcactccatgacccattttgttaggtaagcttggtgaatctcatggaaaccaaaggagagaacttttagggttttagatactaaaggttgagggtct 8653319  T
Q  118 ttggatgcggttcaaagcttcaagatgtgaatcttggagaaccaaaagagggggctcttgggaaaa 183  Q
    |||| || ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  8653320 ttgggtgaggttcaaagcttcaagatgtgaatcttggagaaccaaaagagggggctcttgggaaaa 8653385  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 124; E-Value: 7e-64
Query Start/End: Original strand, 19 - 189
Target Start/End: Original strand, 10071505 - 10071676
Alignment:
Q  19 taagcactccatgacccattt-gttgggtaaacttggtgaatctcattgaaaccaaaggaggaaacttttagggttttagatactaaaagttgagggtct 117  Q
    ||||||||||||||||||||| ||||||||| ||||||||||||||| |||| ||||||||| |||||||| |||||||||||||||| |||||||||||    
T  10071505 taagcactccatgacccattttgttgggtaatcttggtgaatctcatggaaatcaaaggagggaacttttaaggttttagatactaaaggttgagggtct 10071604  T
Q  118 ttggatgcggttcaaagcttcaagatgtgaatcttggagaaccaaaagagggggctcttgggaaaagggttg 189  Q
    |||| || |||||||||||| ||||||||||||||||||||||||||||||||||||||| |||||||||||    
T  10071605 ttgggtgaggttcaaagctttaagatgtgaatcttggagaaccaaaagagggggctcttgtgaaaagggttg 10071676  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 122; E-Value: 1e-62
Query Start/End: Original strand, 47 - 236
Target Start/End: Original strand, 35662091 - 35662280
Alignment:
Q  47 aaacttggtgaatctcattgaaaccaaaggaggaaacttttagggttttagatactaaaagttgagggtctttggatgcggttcaaagcttcaagatgtg 146  Q
    |||||||||||||||||| || |||||| |||  |||||||||| |||||||||||||| |||||| |||||||| || ||||||||||||||| |||||    
T  35662091 aaacttggtgaatctcatggacaccaaatgagagaacttttaggattttagatactaaaggttgagagtctttgggtgaggttcaaagcttcaatatgtg 35662190  T
Q  147 aatcttggagaaccaaaagagggggctcttgggaaaagggttggtgcattttggggaaaattcataaggttggaaaacacatgagtggag 236  Q
    |||||||||||||||||||||||||||||| |||||||||||||||| |||||||||| ||||||  ||||||||||||||||| |||||    
T  35662191 aatcttggagaaccaaaagagggggctcttaggaaaagggttggtgccttttggggaagattcatggggttggaaaacacatgaatggag 35662280  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 122; E-Value: 1e-62
Query Start/End: Original strand, 50 - 211
Target Start/End: Original strand, 46703153 - 46703314
Alignment:
Q  50 cttggtgaatctcattgaaaccaaaggaggaaacttttagggttttagatactaaaagttgagggtctttggatgcggttcaaagcttcaagatgtgaat 149  Q
    ||||||||||||||| |||||||||||||  ||||||||||||||||||||||||| ||||||||||||||| || ||||||||||||||||||||||||    
T  46703153 cttggtgaatctcatggaaaccaaaggagagaacttttagggttttagatactaaaggttgagggtctttgggtgaggttcaaagcttcaagatgtgaat 46703252  T
Q  150 cttggagaaccaaaagagggggctcttgggaaaagggttggtgcattttggggaaaattcat 211  Q
    ||| ||||| |||||||||||||||||||||||||||||||||| |||||||||| ||||||    
T  46703253 cttcgagaatcaaaagagggggctcttgggaaaagggttggtgccttttggggaagattcat 46703314  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 117; E-Value: 1e-59
Query Start/End: Original strand, 50 - 233
Target Start/End: Original strand, 12073045 - 12073227
Alignment:
Q  50 cttggtgaatctcattgaaaccaaaggaggaaacttttagggttttagatactaaaagttgagggtctttggatgcggttcaaagcttcaagatgtgaat 149  Q
    ||||||||||||||| |||||||||||| | ||||||||||||||||||||||||| ||||||||||||||| || |||||||||||||||||||| |||    
T  12073045 cttggtgaatctcatggaaaccaaaggatggaacttttagggttttagatactaaaggttgagggtctttgggtgaggttcaaagcttcaagatgtaaat 12073144  T
Q  150 cttggagaaccaaaagagggggctcttggg-aaaagggttggtgcattttggggaaaattcataaggttggaaaacacatgagtg 233  Q
    ||||||||||||||||| |||||||||||| |||||||||||||| |||| ||||| ||||||  ||||||||||||||||||||    
T  12073145 cttggagaaccaaaaga-ggggctcttgggaaaaagggttggtgcctttt-gggaagattcatggggttggaaaacacatgagtg 12073227  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 112; E-Value: 1e-56
Query Start/End: Original strand, 19 - 232
Target Start/End: Original strand, 41964037 - 41964249
Alignment:
Q  19 taagcactccatgacccatttgttgggtaaacttggtgaatctcattgaaaccaaaggaggaaacttttagggttt-tagatactaaaagttgagggtct 117  Q
    ||||||||| |||||||||||| || | ||  |||||||||||||| |||| ||||||||| |||||||||||| | ||||||||||| |||||||||||    
T  41964037 taagcactctatgacccatttggtgagaaagtttggtgaatctcatggaaatcaaaggagggaacttttagggtatgtagatactaaaggttgagggtct 41964136  T
Q  118 ttggatgcggttcaaagcttcaagatgtgaatcttggagaaccaaaagagggggctcttgggaaaagggttggtgcattttggggaaaattcataaggtt 217  Q
    |||| || |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| ||   ||||||| || ||||||  ||||    
T  41964137 ttgggtgaggttcaaagcttcatgatgtgaatcttggagaaccaaaagagggggctcttgggaaaagggttagt--cttttgggaaagattcatggggtt 41964234  T
Q  218 ggaaaacacatgagt 232  Q
    || ||||||||||||    
T  41964235 gggaaacacatgagt 41964249  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 108; E-Value: 2e-54
Query Start/End: Original strand, 50 - 236
Target Start/End: Original strand, 379030 - 379217
Alignment:
Q  50 cttggtgaatctcattgaaaccaaaggaggaaacttttagggttt-tagatactaaaagttgagggtctttggatgcggttcaaagcttcaagatgtgaa 148  Q
    ||||||||||||| | |||||||||||||  |||||||||| ||| ||||||||||| |||||||| |||||| || |||||||||||||| ||||||||    
T  379030 cttggtgaatctcgtggaaaccaaaggagagaacttttaggatttgtagatactaaaggttgagggactttgggtgaggttcaaagcttcatgatgtgaa 379129  T
Q  149 tcttggagaaccaaaagagggggctcttgggaaaagggttggtgcattttggggaaaattcataaggttggaaaacacatgagtggag 236  Q
    ||||||||||||||||||||||||||||| ||||||||| ||||| |||||||||| |||||| ||  ||| ||||||||||||||||    
T  379130 tcttggagaaccaaaagagggggctcttgtgaaaagggtcggtgccttttggggaagattcatgagaatgggaaacacatgagtggag 379217  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 101; E-Value: 4e-50
Query Start/End: Original strand, 37 - 236
Target Start/End: Original strand, 33989501 - 33989700
Alignment:
Q  37 tttgttgggtaaacttggtgaatctcattgaaaccaaaggaggaaacttttagggt-tttagatactaaaagttgagggtctttggatgcggttcaaagc 135  Q
    ||||||||| || ||||||||||||||| |||||||||| ||  |||||||||||| |||||||||||||  |||||||||||||| || ||||||||||    
T  33989501 tttgttgggcaagcttggtgaatctcatggaaaccaaagcagataacttttagggtatttagatactaaagtttgagggtctttgggtgaggttcaaagc 33989600  T
Q  136 ttcaagatgtgaatcttggagaaccaaaagagggggctcttgggaaaagggttggtgcattttggggaaaattcataaggttggaaaacacatgagtgga 235  Q
    |||||||||||||||||| |||||||||| ||||||||||||||| || ||||||||| |||||||  | ||||||  | |||| |||||||||||||||    
T  33989601 ttcaagatgtgaatcttgaagaaccaaaatagggggctcttgggagaa-ggttggtgccttttgggagagattcatgggattgggaaacacatgagtgga 33989699  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 91; E-Value: 3e-44
Query Start/End: Original strand, 19 - 180
Target Start/End: Complemental strand, 22883300 - 22883138
Alignment:
Q  19 taagcactccatgacccatttgttgggtaaacttggtgaatctcattgaaaccaaaggaggaaacttttagggt-tttagatactaaaagttgagggtct 117  Q
    |||||||||| | |||||||||||| |||| ||||||||||||||| ||||||||| |||| || ||||||||| ||||||||||||| ||||||  | |    
T  22883300 taagcactccttaacccatttgttgagtaagcttggtgaatctcatggaaaccaaatgagggaaattttagggtatttagatactaaaggttgagactat 22883201  T
Q  118 ttggatgcggttcaaagcttcaagatgtgaatcttggagaaccaaaagagggggctcttggga 180  Q
    |||  || |||||||||||||||||||||||||||||||||| ||||||||||||||||||||    
T  22883200 ttgagtgaggttcaaagcttcaagatgtgaatcttggagaacaaaaagagggggctcttggga 22883138  T

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Target: chr4; HSP #21
Raw Score: 91; E-Value: 3e-44
Query Start/End: Original strand, 19 - 180
Target Start/End: Complemental strand, 22934964 - 22934802
Alignment:
Q  19 taagcactccatgacccatttgttgggtaaacttggtgaatctcattgaaaccaaaggaggaaacttttagggt-tttagatactaaaagttgagggtct 117  Q
    |||||||||| | |||||||||||| |||| ||||||||||||||| ||||||||| |||| || ||||||||| ||||||||||||| ||||||  | |    
T  22934964 taagcactccttaacccatttgttgagtaagcttggtgaatctcatggaaaccaaatgagggaaattttagggtatttagatactaaaggttgagactat 22934865  T
Q  118 ttggatgcggttcaaagcttcaagatgtgaatcttggagaaccaaaagagggggctcttggga 180  Q
    |||  || |||||||||||||||||||||||||||||||||| ||||||||||||||||||||    
T  22934864 ttgagtgaggttcaaagcttcaagatgtgaatcttggagaacaaaaagagggggctcttggga 22934802  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 87; E-Value: 8e-42
Query Start/End: Original strand, 126 - 236
Target Start/End: Original strand, 8647866 - 8647976
Alignment:
Q  126 ggttcaaagcttcaagatgtgaatcttggagaaccaaaagagggggctcttgggaaaagggttggtgcattttggggaaaattcataaggttggaaaaca 225  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| ||||||  |||||| |||||    
T  8647866 ggttcaaagcttcaagatgtgaatcttggagaaccaaaagagggggctcttgggaaaagggttggtgccttttggggaagattcatggggttgggaaaca 8647965  T
Q  226 catgagtggag 236  Q
    || ||||||||    
T  8647966 caggagtggag 8647976  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 83; E-Value: 2e-39
Query Start/End: Original strand, 90 - 192
Target Start/End: Original strand, 10071963 - 10072065
Alignment:
Q  90 ggttttagatactaaaagttgagggtctttggatgcggttcaaagcttcaagatgtgaatcttggagaaccaaaagagggggctcttgggaaaagggttg 189  Q
    |||||||||||||||| ||||||||||||||| || |||||||||||||||||||||||||||||||||| ||||||||||||||||| |||||||||||    
T  10071963 ggttttagatactaaaggttgagggtctttgggtgaggttcaaagcttcaagatgtgaatcttggagaactaaaagagggggctcttgtgaaaagggttg 10072062  T
Q  190 gtg 192  Q
    |||    
T  10072063 gtg 10072065  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 55 - 236
Target Start/End: Complemental strand, 38811590 - 38811409
Alignment:
Q  55 tgaatctcattgaaaccaaaggaggaaacttttagggtt-ttagatactaaaagttgagggtctttggatgcggttcaaagcttcaagatgtgaatcttg 153  Q
    |||||||||| ||||| |||||||| ||||||||||||  |||||||||||| ||||||||| ||||| || |||||||||||| |||||||||||||||    
T  38811590 tgaatctcatggaaactaaaggagggaacttttagggtacttagatactaaaggttgagggtatttgggtgaggttcaaagctttaagatgtgaatcttg 38811491  T
Q  154 gagaaccaaaagagggggctcttgggaaaagggttggtgcattttgggga-aaattcataaggttggaaaacacatgagtggag 236  Q
    ||||||| ||||| |||||||||||| ||||||||||||  ||||| ||| | |||||| ||||| | |||||||| |||||||    
T  38811490 gagaacccaaaga-ggggctcttggg-aaagggttggtgtcttttgcggagagattcatgaggttaggaaacacataagtggag 38811409  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #25
Raw Score: 77; E-Value: 8e-36
Query Start/End: Original strand, 30 - 180
Target Start/End: Complemental strand, 35370874 - 35370722
Alignment:
Q  30 tgacccatttgttgggtaaacttggtgaatctcattgaaaccaaaggaggaaacttttagggt-tttagatactaaaagttgagggtctttggatgcggt 128  Q
    |||||||| | ||| |||| |||| |||||||||| |||| ||||||||| |||||||| ||| ||||||||||||| |||||||||||||||  | |||    
T  35370874 tgacccatctattgagtaagcttgatgaatctcatggaaatcaaaggagggaacttttaaggtatttagatactaaaggttgagggtctttgggagaggt 35370775  T
Q  129 tcaaagcttcaagatgtgaatcttggagaacc-aaaagagggggctcttggga 180  Q
    ||||||||| |||||||||||||||||||||| ||||||||||| ||||||||    
T  35370774 tcaaagctttaagatgtgaatcttggagaacctaaaagagggggttcttggga 35370722  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #26
Raw Score: 74; E-Value: 5e-34
Query Start/End: Original strand, 19 - 199
Target Start/End: Original strand, 3785711 - 3785891
Alignment:
Q  19 taagcactccatgacccatttgttgggtaaacttggtgaatctcattgaaaccaaaggaggaaacttttagggttt-tagatactaaaagttgagggtct 117  Q
    |||||||| | |||||||||||||| ||||  |||||| ||||||| |||| ||||||| | |||||||||| |   | ||||||||| |||||| ||||    
T  3785711 taagcactacttgacccatttgttgagtaagtttggtggatctcatggaaatcaaaggatggaacttttaggatacatggatactaaaggttgagagtct 3785810  T
Q  118 ttggatgcggttcaaagcttcaagatgtgaatcttggagaaccaaaagagggggctcttgggaaaagggttggtgcattttg 199  Q
    || |  | | |||||||||||||||||||||||||| |||||||||||||||||||||| |||||||||||||||| |||||    
T  3785811 ttaggcgagattcaaagcttcaagatgtgaatcttgaagaaccaaaagagggggctctt-ggaaaagggttggtgccttttg 3785891  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #27
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 30 - 180
Target Start/End: Complemental strand, 35369971 - 35369824
Alignment:
Q  30 tgacccatttgttgggtaaacttggtgaatctcattgaaaccaaaggaggaaacttttagggttttagatactaaaagttgagggtctttggatgcggtt 129  Q
    |||||||| ||||| |||| |||| |||||||||| ||||  |||||||| ||||||||    ||||||||||||| ||||||||||||||| || ||||    
T  35369971 tgacccatctgttgagtaagcttgatgaatctcatggaaattaaaggagggaactttta----tttagatactaaaggttgagggtctttgggtgaggtt 35369876  T
Q  130 caaagcttcaagatgtgaatcttggagaacc-aaaagagggggctcttggga 180  Q
    ||||| || |||||||||||||||||||||| ||||||||||| ||||||||    
T  35369875 caaagatttaagatgtgaatcttggagaacctaaaagagggggttcttggga 35369824  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #28
Raw Score: 69; E-Value: 5e-31
Query Start/End: Original strand, 81 - 236
Target Start/End: Original strand, 33089582 - 33089737
Alignment:
Q  81 aacttttagggttttagatactaaaagttgagggtctttggatgcggttcaaagcttcaagatgtgaatcttggagaaccaaaagagggggctcttggga 180  Q
    ||||||||||  |||||||||||||  |||||||||||||| || ||||||||| || |||||||||||||||||||| ||||||||||||||||||||     
T  33089582 aacttttaggtatttagatactaaagattgagggtctttgggtgaggttcaaagtttgaagatgtgaatcttggagaatcaaaagagggggctcttggg- 33089680  T
Q  181 aaagggttggtgcattttgggga-aaattcataaggttggaaaacacatgagtggag 236  Q
    | ||||||||||  |||||| || | ||||||  ||| | |||||||||||||||||    
T  33089681 agagggttggtgtcttttggagagagattcatggggtcgaaaaacacatgagtggag 33089737  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #29
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 35 - 198
Target Start/End: Complemental strand, 26699979 - 26699814
Alignment:
Q  35 catttgttgggtaaacttggtgaatctcattgaaaccaaaggaggaaacttttagggt-tttagatactaaaagttgagggtctttggatgcggttcaaa 133  Q
    ||||||||| | || ||| ||||||||||| ||||||||| |||| ||||| |||||  ||||||||||||| ||||| | ||||||| || ||||||||    
T  26699979 catttgttgagcaagctttgtgaatctcatggaaaccaaatgagggaacttgtagggcatttagatactaaaggttgaagatctttggttgaggttcaaa 26699880  T
Q  134 gcttcaagatgtgaatcttggagaaccaaaag-agggggctcttgggaaaagggttggtgcatttt 198  Q
     |||||||||||||||||| |||| ||||| | |||||| |||||| |||||||||||||| ||||    
T  26699879 acttcaagatgtgaatcttagagagccaaatgaagggggatcttggaaaaagggttggtgcctttt 26699814  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #30
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 30 - 178
Target Start/End: Complemental strand, 25723752 - 25723604
Alignment:
Q  30 tgacccatttgttgggtaaacttggtgaatctcattgaaaccaaaggaggaaacttttagggtt-ttagatactaaaagttgagggtctttggatgc-gg 127  Q
    ||||| |||||||  |||| |||||||||| |||| ||||||||| |||  |||| |||||||  ||  |||||||| ||||||  |||||||| |  ||    
T  25723752 tgacctatttgttaagtaagcttggtgaatttcatggaaaccaaatgagtgaactcttagggtacttcaatactaaatgttgag--tctttggagggagg 25723655  T
Q  128 ttcaaagcttcaagatgtgaatcttggagaaccaaaagagggggctcttgg 178  Q
    ||||||||||||| |||||||||||||||||||||||||||| ||||||||    
T  25723654 ttcaaagcttcaaaatgtgaatcttggagaaccaaaagagggagctcttgg 25723604  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #31
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 56 - 182
Target Start/End: Complemental strand, 47515012 - 47514885
Alignment:
Q  56 gaatctcattgaaaccaaaggaggaaacttttagggtt-ttagatactaaaagttgagggtctttggatgcggttcaaagcttcaagatgtgaatcttgg 154  Q
    ||||||||| ||||||||| |||  ||||||||||||  ||| | |||||| ||||| |||||| || ||  ||||||||||||||||| ||||||||||    
T  47515012 gaatctcatggaaaccaaatgagtgaacttttagggtacttaaacactaaaggttgaaggtcttcgggtgaagttcaaagcttcaagatatgaatcttgg 47514913  T
Q  155 agaaccaaaagagggggctcttgggaaa 182  Q
     |||||||||||| || |||||||||||    
T  47514912 tgaaccaaaagagtggactcttgggaaa 47514885  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #32
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 51 - 153
Target Start/End: Original strand, 32091222 - 32091326
Alignment:
Q  51 ttggtgaatctcattgaaaccaaaggaggaaacttttagggt--tttagatactaaaagttgagggtctttggatgcggttcaaagcttcaagatgtgaa 148  Q
    ||||||||| |||| ||||| ||| |||| || ||||| |||  ||| ||||||||| ||||||||||||||  || |||||||| ||||||||||||||    
T  32091222 ttggtgaatttcatggaaactaaaagagggaatttttaaggtattttggatactaaatgttgagggtctttgagtgaggttcaaaacttcaagatgtgaa 32091321  T
Q  149 tcttg 153  Q
    |||||    
T  32091322 tcttg 32091326  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #33
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 143 - 236
Target Start/End: Original strand, 34112357 - 34112450
Alignment:
Q  143 tgtgaatcttggagaaccaaaagagggggctcttgggaaaagggttggtgcattttgggga-aaattcataaggttggaaaacacatgagtggag 236  Q
    ||||||||||||| |||| ||||| | ||||||| | |||||||||||||| ||||||||| |  ||||   |||||||||||||||||||||||    
T  34112357 tgtgaatcttggataacctaaagacgaggctcttag-aaaagggttggtgccttttggggagaggttcacggggttggaaaacacatgagtggag 34112450  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #34
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 56 - 164
Target Start/End: Complemental strand, 22629399 - 22629290
Alignment:
Q  56 gaatctcattgaaaccaaaggaggaaacttttagggt-tttagatactaaaagttgagggtctttggatgcggttcaaagcttcaagatgtgaatcttgg 154  Q
    ||||||||| ||||||||| |||  ||||||||||   |||||| |||||| ||| || |||| ||| || | || |||  |||||||||||||||||||    
T  22629399 gaatctcatagaaaccaaatgagtgaacttttaggaaatttagaaactaaaggttcagtgtctctgggtgagatttaaaagttcaagatgtgaatcttgg 22629300  T
Q  155 agaaccaaaa 164  Q
    ||||||||||    
T  22629299 agaaccaaaa 22629290  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #35
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 128 - 182
Target Start/End: Original strand, 6719316 - 6719370
Alignment:
Q  128 ttcaaagcttcaagatgtgaatcttggagaaccaaaagagggggctcttgggaaa 182  Q
    ||||||| |||||||||||||||||||| ||| ||||||| ||  ||||||||||    
T  6719316 ttcaaaggttcaagatgtgaatcttggaaaactaaaagagtggattcttgggaaa 6719370  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #36
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 15 - 48
Target Start/End: Original strand, 41639182 - 41639215
Alignment:
Q  15 tatgtaagcactccatgacccatttgttgggtaa 48  Q
    |||||||||||| |||||||||||||||||||||    
T  41639182 tatgtaagcacttcatgacccatttgttgggtaa 41639215  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 154; Significance: 9e-82; HSPs: 12)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 154; E-Value: 9e-82
Query Start/End: Original strand, 15 - 236
Target Start/End: Original strand, 45726547 - 45726767
Alignment:
Q  15 tatgtaagcactccatgacccatttgttgggtaaacttggtgaatctcattgaaaccaaaggaggaaacttttagggttttagatactaaaagttgaggg 114  Q
    |||||||||||||||||||||||||||||||||| ||||||||||||||| ||||||||| |||| ||||||||||||||||||||||||| |||||| |    
T  45726547 tatgtaagcactccatgacccatttgttgggtaagcttggtgaatctcatggaaaccaaatgagggaacttttagggttttagatactaaaggttgagag 45726646  T
Q  115 tctttggatgcggttcaaagcttcaagatgtgaatcttggagaaccaaaagagggggctcttgggaaaagggttggtgcattttggggaaaattcataag 214  Q
    ||||||| || |||||||||||||||||||||||||||||||||||||||||||| ||||||||| ||||||||||||| |||||||||| ||||||  |    
T  45726647 tctttgggtgaggttcaaagcttcaagatgtgaatcttggagaaccaaaagagggagctcttggg-aaagggttggtgccttttggggaagattcatggg 45726745  T
Q  215 gttggaaaacacatgagtggag 236  Q
    ||| | ||||||||||||||||    
T  45726746 gtttggaaacacatgagtggag 45726767  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 150; E-Value: 2e-79
Query Start/End: Original strand, 19 - 236
Target Start/End: Complemental strand, 1632279 - 1632062
Alignment:
Q  19 taagcactccatgacccatttgttgggtaaacttggtgaatctcattgaaaccaaaggaggaaacttttagggttttagatactaaaagttgagggtctt 118  Q
    |||||||||||||||| |||||||| |||| ||||||||||||||| |||||||||||||| ||||||||||||||||||||||||| ||||||||||||    
T  1632279 taagcactccatgacctatttgttgtgtaagcttggtgaatctcatggaaaccaaaggagggaacttttagggttttagatactaaaggttgagggtctt 1632180  T
Q  119 tggatgcggttcaaagcttcaagatgtgaatcttggagaaccaaaagagggggctcttgggaaaagggttggtgcattttggggaaaattcataaggttg 218  Q
    ||  || ||||||||||||||||||||||||||||| |||||||||||||||||||||| ||||||||||||||  |||||||||| ||||||  |||||    
T  1632179 tgagtgaggttcaaagcttcaagatgtgaatcttggggaaccaaaagagggggctcttgtgaaaagggttggtgtcttttggggaagattcatggggttg 1632080  T
Q  219 gaaaacacatgagtggag 236  Q
    | ||||||||||||||||    
T  1632079 ggaaacacatgagtggag 1632062  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 135; E-Value: 2e-70
Query Start/End: Original strand, 15 - 236
Target Start/End: Complemental strand, 35447435 - 35447214
Alignment:
Q  15 tatgtaagcactccatgacccatttgttgggtaaacttggtgaatctcattgaaaccaaaggaggaaacttttagggttttagatactaaaagttgaggg 114  Q
    |||||||||||||||||||||||||||||||||| ||||||||||||||| |||||||||||||  ||||||||||||||||||||||||| |||||| |    
T  35447435 tatgtaagcactccatgacccatttgttgggtaagcttggtgaatctcatggaaaccaaaggagagaacttttagggttttagatactaaaggttgagag 35447336  T
Q  115 tctttggatgcggttcaaagcttcaagatgtgaatcttg-gagaaccaaaagagggggctcttgggaaaagggttggtgcattttggggaaaattcataa 213  Q
    | ||||  || |||||||||||||||||||||| ||||| ||||||||||||| |||||||||| ||||||||||||||| ||||||| || ||||||      
T  35447335 tatttgtgtgaggttcaaagcttcaagatgtgagtcttgagagaaccaaaaga-ggggctcttgtgaaaagggttggtgccttttgggaaagattcatgg 35447237  T
Q  214 ggttggaaaacacatgagtggag 236  Q
    |||||| ||||||||||||||||    
T  35447236 ggttgggaaacacatgagtggag 35447214  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 129; E-Value: 7e-67
Query Start/End: Original strand, 19 - 231
Target Start/End: Original strand, 17450212 - 17450423
Alignment:
Q  19 taagcactccatgacccatttgttgggtaaacttggtgaatctcattgaaaccaaaggaggaaacttttagggttttagatactaaaagttgagggtctt 118  Q
    |||||||| |||||||||||||||||| |||||| | ||||||||| |||||||||||||| ||||||||||||||||||||||||| ||||||||||||    
T  17450212 taagcacttcatgacccatttgttgggcaaacttagagaatctcatggaaaccaaaggagggaacttttagggttttagatactaaaggttgagggtctt 17450311  T
Q  119 tggatgcggttcaaagcttcaagatgtgaatcttggagaaccaaaagagggggctcttgggaaaagggttggtgcattttggggaaaattcataaggttg 218  Q
    ||  || |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||  |||| | || ||||||  || ||    
T  17450312 tgagtgaggttcaaagcttcaagatgtgaatcttggagaaccaaaagagggggctcttggg-aaagggttggtgccctttgtgaaagattcatggggatg 17450410  T
Q  219 gaaaacacatgag 231  Q
    | |||||||||||    
T  17450411 ggaaacacatgag 17450423  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 127; E-Value: 1e-65
Query Start/End: Original strand, 19 - 236
Target Start/End: Original strand, 7450921 - 7451138
Alignment:
Q  19 taagcactccatgacccattt-gttgggtaaacttggtgaatctcattgaaaccaaaggaggaaacttttagggttttagatactaaaagttgagggtct 117  Q
    ||||||||||||||||||||| ||||||||| ||||||||||||||| ||||| |||||||| ||||||||||||||||||||||||| |||| | ||||    
T  7450921 taagcactccatgacccattttgttgggtaagcttggtgaatctcatggaaacaaaaggagggaacttttagggttttagatactaaaggttg-gcgtct 7451019  T
Q  118 ttggatgcggttcaaagcttcaagatgtgaatcttggagaaccaaaagagggggctcttgggaaaagggttggtgcattttggggaaaattcataaggtt 217  Q
    |||| || |||||||||||||| |||||||||||||||||||||||||||||||||||| || ||||||||| ||  |||||| ||| ||| ||  ||||    
T  7451020 ttgggtgaggttcaaagcttcaggatgtgaatcttggagaaccaaaagagggggctctttggtaaagggttgatgacttttggagaagatttatggggtt 7451119  T
Q  218 ggaaaacacatgagtggag 236  Q
    |||||||||||||||||||    
T  7451120 ggaaaacacatgagtggag 7451138  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 122; E-Value: 1e-62
Query Start/End: Original strand, 19 - 236
Target Start/End: Complemental strand, 42288655 - 42288440
Alignment:
Q  19 taagcactccatgacccatttgttgggtaaacttggtgaatctcattgaaaccaaaggaggaaacttttagggttttagatactaaaagttgagggtctt 118  Q
    ||||||||| ||||||||||||||    || || |||||||||||| ||||||||| |||  ||||||||||||||||||||||||| ||||||||||||    
T  42288655 taagcactctatgacccatttgttaaa-aagctaggtgaatctcatggaaaccaaatgagagaacttttagggttttagatactaaaggttgagggtctt 42288557  T
Q  119 tggatgcggttcaaagcttcaagatgtgaatcttggagaaccaaaagagggggctcttgggaaaagggttggtgcattttggggaaaattcataaggttg 218  Q
    ||| || |||||||| ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |||| ||||| ||||||  |||||    
T  42288556 tgggtgaggttcaaaacttcaagatgtgaatcttgaagaaccaaaagagggggctcttgggaaaagggttggtgcctttt-gggaagattcatggggttg 42288458  T
Q  219 gaaaacacatgagtggag 236  Q
    | ||||||||||||||||    
T  42288457 ggaaacacatgagtggag 42288440  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 97; E-Value: 9e-48
Query Start/End: Original strand, 50 - 232
Target Start/End: Original strand, 33647820 - 33648004
Alignment:
Q  50 cttggtgaatctcattgaaaccaaaggaggaaacttttagggt-tttagatactaaaagttgagggtctttggatgcggttcaaagcttcaagatgtgaa 148  Q
    |||||||||| |||| |||||||||||||  ||||||||| || ||||||||||||| ||||| ||||||||| || ||||||||| |||||||||||||    
T  33647820 cttggtgaatttcatggaaaccaaaggagagaacttttagagtatttagatactaaaggttgaaggtctttgggtgaggttcaaagtttcaagatgtgaa 33647919  T
Q  149 tcttggagaaccaaaagagggggctcttgggaaaagggttggtgcattttgggga-aaattcataaggttggaaaacacatgagt 232  Q
    |||||||||| ||||||||| |||||||||||||||||||||||| ||||| ||| | |||||  ||||||||||||| ||||||    
T  33647920 tcttggagaatcaaaagaggaggctcttgggaaaagggttggtgccttttgaggagagattcacgaggttggaaaacatatgagt 33648004  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 89; E-Value: 5e-43
Query Start/End: Original strand, 30 - 193
Target Start/End: Complemental strand, 42262146 - 42261983
Alignment:
Q  30 tgacccatttgttgggtaaacttggtgaatctcattgaaaccaaaggaggaaacttttagggttt-tagatactaaaagttgagggtctttggatgcggt 128  Q
    |||||||||||||| | || |||||||||||||||   |||||||||||| | |||||||||| | ||||||||||| ||||||||||||||| || |||    
T  42262146 tgacccatttgttgagcaagcttggtgaatctcatgagaaccaaaggagggagcttttagggtatgtagatactaaaggttgagggtctttgggtgaggt 42262047  T
Q  129 tcaaagcttcaagatgtgaatcttggagaaccaaaagagggggctcttgggaaaagggttggtgc 193  Q
    |||||||||||||||||||||||||||||||||||| ||||||||||| || | |||||||||||    
T  42262046 tcaaagcttcaagatgtgaatcttggagaaccaaaaaagggggctctttgg-agagggttggtgc 42261983  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 87; E-Value: 8e-42
Query Start/End: Original strand, 80 - 236
Target Start/End: Original strand, 24397738 - 24397896
Alignment:
Q  80 aaacttttagggt-tttagatactaaaagttgagggtctttggatgcggttcaaagcttcaagatgtgaatcttggagaaccaaaagagggggctcttgg 178  Q
    ||||||||||||| ||||||||||||| ||||| ||||||||  || ||||||||||||||| |||||||||||||||||||||||||||||||||||||    
T  24397738 aaacttttagggtatttagatactaaaggttgacggtctttgtgtgaggttcaaagcttcaaaatgtgaatcttggagaaccaaaagagggggctcttgg 24397837  T
Q  179 gaaaagggttggtgcattttgggga-aaattcataaggttggaaaacacatgagtggag 236  Q
    ||||||||||||||| |||| |||| | | ||||  || ||| ||||||||||||||||    
T  24397838 gaaaagggttggtgccttttagggagagactcatcgggctggtaaacacatgagtggag 24397896  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 30 - 164
Target Start/End: Complemental strand, 30218570 - 30218435
Alignment:
Q  30 tgacccatttgttgggtaaacttggtgaatctcattgaaaccaaaggaggaaacttttagggt-tttagatactaaaagttgagggtctttggatgcggt 128  Q
    ||||| ||| ||||||||| |||||||||| | || |||  ||||||||| |||||||||||| ||||||||||| | ||||||||||||||| || |||    
T  30218570 tgacctattcgttgggtaatcttggtgaatattatggaactcaaaggagggaacttttagggtatttagatactatatgttgagggtctttgggtgaggt 30218471  T
Q  129 tcaaagcttcaagatgtgaatcttggagaaccaaaa 164  Q
    ||||| | |||| |||||||||||||| ||||||||    
T  30218470 tcaaaacatcaaaatgtgaatcttggacaaccaaaa 30218435  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 56 - 205
Target Start/End: Complemental strand, 40935690 - 40935541
Alignment:
Q  56 gaatctcattgaaaccaaaggaggaaacttttagggtt-ttagatactaaaagttgagggtctttggatgcggttcaaagcttcaagatgtgaatcttgg 154  Q
    ||||||||| |||||||||||||  | | |||||||   ||||| |||||| |||||||| ||||||  | | |||||||  || | |||||||||| ||    
T  40935690 gaatctcatggaaaccaaaggagagaccgtttagggaacttagaaactaaaggttgagggcctttgggagagattcaaagtgtccaaatgtgaatctagg 40935591  T
Q  155 agaaccaaaagagggggctcttgggaaaagggttggtgcattttggggaaa 205  Q
    |||||||||||| | |||||||||| ||||||||||||| | |||||||||    
T  40935590 agaaccaaaagatgaggctcttggg-aaagggttggtgcctattggggaaa 40935541  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 142 - 203
Target Start/End: Original strand, 24197643 - 24197703
Alignment:
Q  142 atgtgaatcttggagaaccaaaagagggggctcttgggaaaagggttggtgcattttgggga 203  Q
    ||||||||||||| ||||||||||||||| |||||||| | ||||||||||| |||||||||    
T  24197643 atgtgaatcttggggaaccaaaagaggggactcttggg-agagggttggtgccttttgggga 24197703  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 150; Significance: 2e-79; HSPs: 13)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 150; E-Value: 2e-79
Query Start/End: Original strand, 15 - 236
Target Start/End: Original strand, 21593283 - 21593504
Alignment:
Q  15 tatgtaagcactccatgacccatttgttgggtaaacttggtgaatctcattgaaaccaaaggaggaaacttttagggttttagatactaaaagttgaggg 114  Q
    |||||||||||||||| ||||||||||||||||| ||||||||||||||| |||||||||||    ||||||||||||||||||||||||| ||||||||    
T  21593283 tatgtaagcactccataacccatttgttgggtaagcttggtgaatctcatggaaaccaaaggttagaacttttagggttttagatactaaatgttgaggg 21593382  T
Q  115 tctttggatgcggttcaaagcttcaagatgtgaatcttggagaaccaaaagagggggctcttgggaaaagggttggtgcattttggggaaaattcataag 214  Q
    ||||||| || ||||||||| || ||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |||||| ||| ||||||  |    
T  21593383 tctttgggtgaggttcaaagatttaagatgtgaatcttggagaaccaaaagagggggctcttggggaaagggttggtgccttttggagaagattcatggg 21593482  T
Q  215 gttggaaaacacatgagtggag 236  Q
    ||||||||||||||||||||||    
T  21593483 gttggaaaacacatgagtggag 21593504  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 136; E-Value: 5e-71
Query Start/End: Original strand, 30 - 236
Target Start/End: Complemental strand, 3809245 - 3809038
Alignment:
Q  30 tgacccatttgttgggtaaacttggtgaatctcattgaaaccaaaggaggaaacttttagggttttagatactaaaagttgagggtctttggatgcggtt 129  Q
    |||||||||||||| | || ||||||||||||||| |||||||||||||| ||||||||||||||||||||||||| ||||||||||||||| || ||||    
T  3809245 tgacccatttgttgagcaagcttggtgaatctcatggaaaccaaaggagggaacttttagggttttagatactaaaggttgagggtctttgggtgaggtt 3809146  T
Q  130 caaagcttcaagatgtgaatcttggagaaccaaaagag-ggggctcttgggaaaagggttggtgcattttggggaaaattcataaggttggaaaacacat 228  Q
    |||||||||||||||||||||||||||||||||||||| |||||||||| ||||||||||||| | |||||| ||| ||||||  |||||| ||||||||    
T  3809145 caaagcttcaagatgtgaatcttggagaaccaaaagaggggggctcttgtgaaaagggttggttccttttggagaagattcatggggttgggaaacacat 3809046  T
Q  229 gagtggag 236  Q
    ||||||||    
T  3809045 gagtggag 3809038  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 133; E-Value: 3e-69
Query Start/End: Original strand, 15 - 236
Target Start/End: Original strand, 17762604 - 17762827
Alignment:
Q  15 tatgtaagcactccatgacccatttgttgggtaaacttggtgaatctcattgaaaccaaaggaggaaacttttagggttttagatactaaaagttgaggg 114  Q
    ||||||||||||||||| |||||||||||||||| ||||||||||||||| ||||| |||||||  ||||||||||||||||||||||||| |||||||     
T  17762604 tatgtaagcactccatggcccatttgttgggtaagcttggtgaatctcatggaaacaaaaggagagaacttttagggttttagatactaaaggttgagga 17762703  T
Q  115 tctttggatgcggttcaaagcttcaagatgtgaatcttggagaaccaaaagagggggctcttgggaaaagggttggtgcattttgggg--aaaattcata 212  Q
    ||||||| ||  |||||| |||||||||||||||||||||||||||||||||||||||||||| ||||||| ||||||| ||||||||   | ||||||     
T  17762704 tctttgggtgaagttcaaggcttcaagatgtgaatcttggagaaccaaaagagggggctcttgtgaaaaggtttggtgccttttgggggttagattcatg 17762803  T
Q  213 aggttggaaaacacatgagtggag 236  Q
     |||||| ||||||||||||||||    
T  17762804 gggttgggaaacacatgagtggag 17762827  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 125; E-Value: 2e-64
Query Start/End: Original strand, 19 - 230
Target Start/End: Complemental strand, 2973487 - 2973275
Alignment:
Q  19 taagcactccatgacccatttgttgggtaaacttggtgaatctcattgaaaccaaaggaggaaacttttagggttt-tagatactaaaagttgagggtct 117  Q
    ||||||||  ||||||||||||||  |  | ||||||||||||||| |||||||||||||| |||||||||||||| ||||||||||| ||||| |||||    
T  2973487 taagcactttatgacccatttgttaagagaccttggtgaatctcatggaaaccaaaggagggaacttttagggtttgtagatactaaaggttgaaggtct 2973388  T
Q  118 ttggatgcggttcaaagcttcaagatgtgaatcttggagaaccaaaagagggggctcttgggaaaagggttggtgcattttggggaaaattcataaggtt 217  Q
    |||| || |||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |||| ||||| ||||||  ||||    
T  2973387 ttgggtgaggttcaaagcttcaagatgtgaatcttggagaaccaaaagagggggctcttgtgaaaagggttggtgcttttttgggaagattcatggggtt 2973288  T
Q  218 ggaaaacacatga 230  Q
    || ||||||||||    
T  2973287 gggaaacacatga 2973275  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 123; E-Value: 3e-63
Query Start/End: Original strand, 50 - 236
Target Start/End: Original strand, 5043280 - 5043465
Alignment:
Q  50 cttggtgaatctcattgaaaccaaaggaggaaacttttagggttttagatactaaaagttgagggtctttggatgcggttcaaagcttcaagatgtgaat 149  Q
    ||||||||||||||| |||| ||||||||| |||||||||||||||||||||||||  |||||||||||||| || ||||||||||||||||||| ||||    
T  5043280 cttggtgaatctcatggaaatcaaaggagggaacttttagggttttagatactaaagattgagggtctttgggtgaggttcaaagcttcaagatgagaat 5043379  T
Q  150 cttggagaaccaaaagagggggctcttgggaaaagggttggtgcattttggggaaaattcataaggttggaaaacacatgagtggag 236  Q
    |||||||||||||||||| ||||||||||||||||||||||||| |||| ||||| ||||||  |||||| ||||||||||||||||    
T  5043380 cttggagaaccaaaagagagggctcttgggaaaagggttggtgcctttt-gggaagattcatggggttgggaaacacatgagtggag 5043465  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 123; E-Value: 3e-63
Query Start/End: Original strand, 34 - 229
Target Start/End: Complemental strand, 22425358 - 22425162
Alignment:
Q  34 ccatttgttgggtaaacttggtgaatctcattgaaaccaaaggaggaaacttttagggttttagatactaaaagttgagggtctttggatgcggttcaaa 133  Q
    ||||||||||| ||| ||||||||||||||| |||||||||||||| |||||| |||||||||||||||||| ||||||||||||||| || |||||| |    
T  22425358 ccatttgttggataagcttggtgaatctcatggaaaccaaaggagggaacttt-agggttttagatactaaaggttgagggtctttgggtgtggttcaga 22425260  T
Q  134 gcttcaagatgtgaatcttggagaaccaaaagaggggg--ctcttgggaaaagggttggtgcattttggggaaaattcataaggttggaaaacacatg 229  Q
    ||||||||||||||||||||||||||||||||||||||  ||||||||| ||||||||||||||||||||||| ||||||  |||||  |||||||||    
T  22425259 gcttcaagatgtgaatcttggagaaccaaaagaggggggcctcttgggataagggttggtgcattttggggaagattcatggggttgtgaaacacatg 22425162  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 123; E-Value: 3e-63
Query Start/End: Original strand, 13 - 231
Target Start/End: Complemental strand, 26830677 - 26830459
Alignment:
Q  13 aatatgtaagcactccatgacccatttgttgggtaaacttggtgaatctcattgaaaccaaaggaggaaacttttagggttttagatactaaaagttgag 112  Q
    ||||| |||||||||||||| ||||||||||||||| ||||||||||||||| |||||||||||||| |||||||||||||||||||| |||| | ||||    
T  26830677 aatatataagcactccatgatccatttgttgggtaagcttggtgaatctcatggaaaccaaaggagggaacttttagggttttagataataaaggctgag 26830578  T
Q  113 ggtctttggatgcggttcaaagcttcaagatgtgaatcttggagaaccaaaagagggggctcttgggaaaagggttggtgcattttggggaaaattcata 212  Q
    ||||||||  |  |||| ||| |||||||||||||||||||||||||||||||||| | |||||||||||| ||||||||| |||||| ||| ||||||     
T  26830577 ggtctttgagtaaggtttaaaacttcaagatgtgaatcttggagaaccaaaagaggagtctcttgggaaaaaggttggtgccttttggagaagattcatg 26830478  T
Q  213 aggttggaaaacacatgag 231  Q
     |||||| ||||| |||||    
T  26830477 gggttgggaaacagatgag 26830459  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 100; E-Value: 1e-49
Query Start/End: Original strand, 66 - 236
Target Start/End: Original strand, 26800438 - 26800608
Alignment:
Q  66 gaaaccaaaggaggaaacttttagggttt-tagatactaaaagttgagggtctttggatgcggttcaaagcttcaagatgtgaatcttggagaaccaaaa 164  Q
    ||||||||||||| ||||||||||||| | ||||||||||| ||||||||||||||| || ||||||||||||||||||||| ||| |||| ||||||||    
T  26800438 gaaaccaaaggagaaaacttttagggtatgtagatactaaaggttgagggtctttgggtgaggttcaaagcttcaagatgtggatcatggataaccaaaa 26800537  T
Q  165 gagggggctcttgggaaaagggttggtgcattttggggaaaattcataaggttggaaaacacatgagtggag 236  Q
    ||||||||||||||||||| ||||||||| |||||||||| ||||||  || ||| ||||||||||||||||    
T  26800538 gagggggctcttgggaaaaaggttggtgccttttggggaagattcat-gggatgggaaacacatgagtggag 26800608  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 98; E-Value: 2e-48
Query Start/End: Original strand, 96 - 237
Target Start/End: Complemental strand, 603550 - 603409
Alignment:
Q  96 agatactaaaagttgagggtctttggatgcggttcaaagcttcaagatgtgaatcttggagaaccaaaagagggggctcttgggaaaagggttggtgcat 195  Q
    ||||| |||| |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| | ||||||||||||| |    
T  603550 agatagtaaaggttgagggtctttggatgaggttcaaagcttcaagatgtgaatcttggagaaccaaaagagggggctcttgaggaaagggttggtgcct 603451  T
Q  196 tttggggaaaattcataaggttggaaaacacatgagtggagt 237  Q
    ||||| ||| ||||||  |||||| |||||||||||||||||    
T  603450 tttggagaagattcatggggttgggaaacacatgagtggagt 603409  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 30 - 178
Target Start/End: Original strand, 25072817 - 25072965
Alignment:
Q  30 tgacccatttgttgggtaaacttggtgaatctcattgaaaccaaaggaggaaacttttagggt-tttagatactaaaagttgagggtctttggatgcggt 128  Q
    |||| ||||||||| |||| |||| |||||||||| |||| ||||| ||  |||||||||||| ||||||||||||| ||||||||||||||| || |||    
T  25072817 tgactcatttgttgagtaagcttgatgaatctcatggaaatcaaagaagtgaacttttagggtatttagatactaaaggttgagggtctttgggtgaggt 25072916  T
Q  129 tcaaagcttcaagatgtgaatcttggagaaccaaaagagggggctcttgg 178  Q
    |||||||||||||||||||||||| ||||||| |||| ||||||||||||    
T  25072917 tcaaagcttcaagatgtgaatctttgagaacccaaag-gggggctcttgg 25072965  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 69; E-Value: 5e-31
Query Start/End: Original strand, 107 - 236
Target Start/End: Original strand, 17757791 - 17757922
Alignment:
Q  107 gttgagggtctttggatgcggttcaaagcttcaagatgtgaatcttggagaaccaaaagagggggctcttgggaaaagggttggtgcattttgggg--aa 204  Q
    ||||| ||||||||| || | |||||||||| ||||||||||| |||||||||||||| |||||||||||| ||||||||||||||||||||||||   |    
T  17757791 gttgatggtctttgggtgagattcaaagcttgaagatgtgaatgttggagaaccaaaatagggggctcttgtgaaaagggttggtgcattttgggggtta 17757890  T
Q  205 aattcataaggttggaaaacacatgagtggag 236  Q
     ||||||  |||||| ||||||||||||||||    
T  17757891 gattcatggggttgggaaacacatgagtggag 17757922  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 29 - 70
Target Start/End: Original strand, 26661580 - 26661621
Alignment:
Q  29 atgacccatttgttgggtaaacttggtgaatctcattgaaac 70  Q
    |||||| ||||||||||||| ||||||||||||||| |||||    
T  26661580 atgaccaatttgttgggtaagcttggtgaatctcatggaaac 26661621  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 29 - 70
Target Start/End: Original strand, 26767551 - 26767592
Alignment:
Q  29 atgacccatttgttgggtaaacttggtgaatctcattgaaac 70  Q
    |||||| ||||||||||||| ||||||||||||||| |||||    
T  26767551 atgaccaatttgttgggtaagcttggtgaatctcatggaaac 26767592  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0286 (Bit Score: 147; Significance: 1e-77; HSPs: 1)
Name: scaffold0286
Description:

Target: scaffold0286; HSP #1
Raw Score: 147; E-Value: 1e-77
Query Start/End: Original strand, 30 - 236
Target Start/End: Original strand, 11190 - 11396
Alignment:
Q  30 tgacccatttgttgggtaaacttggtgaatctcattgaaaccaaaggaggaaacttttagggttttagatactaaaagttgagggtctttggatgcggtt 129  Q
    ||||||||||||||||||| |||||| |||||||| |||||||||||||| ||||||||||||||||||||||||| ||||||||||||||| || ||||    
T  11190 tgacccatttgttgggtaagcttggtaaatctcatggaaaccaaaggagggaacttttagggttttagatactaaaggttgagggtctttgggtgaggtt 11289  T
Q  130 caaagcttcaagatgtgaatcttggagaaccaaaagagggggctcttgggaaaagggttggtgcattttggggaaaattcataaggttggaaaacacatg 229  Q
    ||||||||||||||||||||||||||||||||||||| |||||||||||| ||||||||||||| |||||| ||| ||||||  |||||| |||||||||    
T  11290 caaagcttcaagatgtgaatcttggagaaccaaaagatggggctcttggggaaagggttggtgccttttggagaagattcatggggttgggaaacacatg 11389  T
Q  230 agtggag 236  Q
    |||||||    
T  11390 agtggag 11396  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 147; Significance: 1e-77; HSPs: 17)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 147; E-Value: 1e-77
Query Start/End: Original strand, 30 - 236
Target Start/End: Complemental strand, 42435527 - 42435321
Alignment:
Q  30 tgacccatttgttgggtaaacttggtgaatctcattgaaaccaaaggaggaaacttttagggttttagatactaaaagttgagggtctttggatgcggtt 129  Q
    ||||||||||||| ||||| ||||||||||||||| |||||||||||||||||||||||||||||||||||||||| ||||||||||||||| || ||||    
T  42435527 tgacccatttgttcggtaagcttggtgaatctcatggaaaccaaaggaggaaacttttagggttttagatactaaaggttgagggtctttgggtgaggtt 42435428  T
Q  130 caaagcttcaagatgtgaatcttggagaaccaaaagagggggctcttgggaaaagggttggtgcattttggggaaaattcataaggttggaaaacacatg 229  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||  |||||||||| ||||||  |||||| ||||| |||    
T  42435427 caaagcttcaagatgtgaatcttggagaaccaaaagagggggctcttgggaaaaaggttggtgacttttggggaagattcatggggttgggaaacatatg 42435328  T
Q  230 agtggag 236  Q
    | |||||    
T  42435327 aatggag 42435321  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 145; E-Value: 2e-76
Query Start/End: Original strand, 15 - 235
Target Start/End: Original strand, 11383603 - 11383823
Alignment:
Q  15 tatgtaagcactccatgacccatttgttgggtaaacttggtgaatctcattgaaaccaaaggaggaaacttttagggttttagatactaaaagttgaggg 114  Q
    ||||||||||||||||| |||||||||| || || ||||||||||||||| |||||||||||||| ||||||||||||||||||||||||| ||||||||    
T  11383603 tatgtaagcactccatgtcccatttgttaggcaagcttggtgaatctcatggaaaccaaaggagggaacttttagggttttagatactaaaggttgaggg 11383702  T
Q  115 tctttggatgcggttcaaagcttcaagatgtgaatcttggagaaccaaaagagggggctcttgggaaaagggttggtgcattttggggaaaattcataag 214  Q
    ||||||| || |||||||||||||||||||||||||||||||||||||||||||||||| ||| ||||||||||||||| ||||| |||| ||||||  |    
T  11383703 tctttgggtgaggttcaaagcttcaagatgtgaatcttggagaaccaaaagagggggctattgtgaaaagggttggtgccttttgaggaagattcatggg 11383802  T
Q  215 gttggaaaacacatgagtgga 235  Q
    ||||| ||| |||| ||||||    
T  11383803 gttgggaaatacataagtgga 11383823  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 143; E-Value: 3e-75
Query Start/End: Original strand, 15 - 233
Target Start/End: Original strand, 22976151 - 22976368
Alignment:
Q  15 tatgtaagcactccatgacccatttgttgggtaaacttggtgaatctcattgaaaccaaaggaggaaacttttagggttttagatactaaaagttgaggg 114  Q
    |||||||||||||||| ||||||||||||||||| ||| ||||||||| | |||||||||||||  ||||||||| ||||||||||||||| ||||||||    
T  22976151 tatgtaagcactccataacccatttgttgggtaagcttagtgaatctcttcgaaaccaaaggagtgaacttttagagttttagatactaaaggttgaggg 22976250  T
Q  115 tctttggatgcggttcaaagcttcaagatgtgaatcttggagaaccaaaagagggggctcttgggaaaagggttggtgcattttggggaaaattcataag 214  Q
    ||||||| || ||||||||||||||||||||||||||||||||||||||||||| ||||||||| |||||||||||||| |||||||||| ||||||  |    
T  22976251 tctttgggtgaggttcaaagcttcaagatgtgaatcttggagaaccaaaagaggaggctcttggaaaaagggttggtgccttttggggaagattcatggg 22976350  T
Q  215 gttggaaaacacatgagtg 233  Q
    ||| |||||||||||||||    
T  22976351 gtt-gaaaacacatgagtg 22976368  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 132; E-Value: 1e-68
Query Start/End: Original strand, 19 - 236
Target Start/End: Original strand, 44353416 - 44353630
Alignment:
Q  19 taagcactccatgacccatttgttgggtaaacttggtgaatctcattgaaaccaaaggaggaaacttttagggttttagatactaaaagttgagggtctt 118  Q
    |||||| |||||||| |||||||||||||| ||||||||||||||| |||||||||||||| ||||||||||||||||||||||||| ||||||||||||    
T  44353416 taagcaatccatgactcatttgttgggtaagcttggtgaatctcatggaaaccaaaggagggaacttttagggttttagatactaaaggttgagggtctt 44353515  T
Q  119 tggatgcggttcaaagcttcaagatgtgaatcttggagaaccaaaagagggggctcttgggaaaagggttggtgcattttggggaaaattcataaggttg 218  Q
    ||| || |||| ||| ||||||||   |||||||||||||| ||||||||||||||||| ||| ||||||||||| |||||| ||| ||||||  |||||    
T  44353516 tgggtgaggtttaaaacttcaaga---gaatcttggagaactaaaagagggggctcttgtgaagagggttggtgccttttggagaagattcatggggttg 44353612  T
Q  219 gaaaacacatgagtggag 236  Q
    ||||||||||||||||||    
T  44353613 gaaaacacatgagtggag 44353630  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 113; E-Value: 3e-57
Query Start/End: Original strand, 30 - 182
Target Start/End: Original strand, 4283178 - 4283330
Alignment:
Q  30 tgacccatttgttgggtaaacttggtgaatctcattgaaaccaaaggaggaaacttttagggttttagatactaaaagttgagggtctttggatgcggtt 129  Q
    |||||||||||||| |||| ||||||||||||||| |||||||||||||  ||||||||||||||||||||||||| ||||||||||||||| || ||||    
T  4283178 tgacccatttgttgtgtaagcttggtgaatctcatggaaaccaaaggagagaacttttagggttttagatactaaaggttgagggtctttgggtgaggtt 4283277  T
Q  130 caaagcttcaagatgtgaatcttggagaaccaaaagagggggctcttgggaaa 182  Q
    ||||||||||||||||| |||||||||||||||||||||||||| ||||||||    
T  4283278 caaagcttcaagatgtggatcttggagaaccaaaagagggggcttttgggaaa 4283330  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 112; E-Value: 1e-56
Query Start/End: Original strand, 30 - 236
Target Start/End: Original strand, 40221376 - 40221583
Alignment:
Q  30 tgacccatttgttgggtaaacttggtgaatctcattgaaaccaaaggagga-aacttttagggttttagatactaaaagttgagggtctttggatgcggt 128  Q
    |||||||||||||| |||| ||||||||||||||| ||||||| ||||||  ||||||||||||||| ||||||||| || || |||||||||||| |||    
T  40221376 tgacccatttgttgagtaagcttggtgaatctcatggaaaccataggaggggaacttttagggtttttgatactaaaggtggaaggtctttggatgaggt 40221475  T
Q  129 tcaaagcttcaagatgtgaatcttggagaaccaaaagagggggctcttgggaaaagggttggtgcattttggggaaaattcataaggttggaaaacacat 228  Q
    | | | |||||||||||||||||| ||||||||||| ||||||||||||||||| ||||| |||| |||||||||| ||||||  |||||| ||||||||    
T  40221476 ttagaacttcaagatgtgaatcttcgagaaccaaaatagggggctcttgggaaaggggttagtgccttttggggaagattcatggggttgggaaacacat 40221575  T
Q  229 gagtggag 236  Q
    ||||||||    
T  40221576 gagtggag 40221583  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 89; E-Value: 5e-43
Query Start/End: Original strand, 50 - 205
Target Start/End: Complemental strand, 3000037 - 2999882
Alignment:
Q  50 cttggtgaatctcattgaaaccaaaggaggaaacttttagggt-tttagatactaaaagttgagggtctttggatgcggttcaaagcttcaagatgtgaa 148  Q
    ||||||||||||||| |||||||||||||  |||||||||||  ||||||||||||| ||||||||||||||| ||  ||||||||||||||||||||||    
T  3000037 cttggtgaatctcatagaaaccaaaggagagaacttttagggaatttagatactaaaggttgagggtctttgggtgatgttcaaagcttcaagatgtgaa 2999938  T
Q  149 tcttggagaaccaaaagagggggctcttgggaaaagggttggtgcattttggggaaa 205  Q
    ||||||||||||||||||||||| ||||||| | | ||||||||  |||||||||||    
T  2999937 tcttggagaaccaaaagagggggttcttggg-atatggttggtgtcttttggggaaa 2999882  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 83; E-Value: 2e-39
Query Start/End: Original strand, 95 - 233
Target Start/End: Original strand, 40328476 - 40328614
Alignment:
Q  95 tagatactaaaagttgagggtctttggatgcggttcaaagcttcaagatgtgaatcttggagaaccaaaagagggggctcttgggaaaagggttggtgca 194  Q
    |||||||||||  || ||||||||||| || |||||||||||||| ||||||||||||||||||||||||||||||| |||||||||||||||||||||     
T  40328476 tagatactaaagatttagggtctttgggtgaggttcaaagcttcatgatgtgaatcttggagaaccaaaagagggggttcttgggaaaagggttggtgcc 40328575  T
Q  195 ttttggggaaaattcataaggttggaaaacacatgagtg 233  Q
    |||| ||||| ||||||  || ||| |||||||||||||    
T  40328576 ttttagggaagattcatggggatgggaaacacatgagtg 40328614  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 76; E-Value: 3e-35
Query Start/End: Original strand, 37 - 167
Target Start/End: Complemental strand, 20686586 - 20686456
Alignment:
Q  37 tttgttgggtaaacttggtgaatctcattgaaaccaaaggaggaaacttttagggt-tttagatactaaaagttgagggtctttggatgcggttcaaagc 135  Q
    |||||||||||| || ||||||||||||||||||||||||||| |||||| |||||  |||||||||||| ||||||| ||||||| ||  |||||||||    
T  20686586 tttgttgggtaagctcggtgaatctcattgaaaccaaaggagggaactttcagggtacttagatactaaatgttgaggatctttgg-tgaagttcaaagc 20686488  T
Q  136 ttcaagatgtgaatcttggagaaccaaaagag 167  Q
    |||||||||||||||||||| |||||||||||    
T  20686487 ttcaagatgtgaatcttggataaccaaaagag 20686456  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 19 - 176
Target Start/End: Original strand, 40585345 - 40585503
Alignment:
Q  19 taagcactccatgacccatttgttgggtaaacttggtgaatctcattgaaaccaaaggaggaaacttttagggt-tttagatactaaaagttgagggtct 117  Q
    |||||||||  |||||||||||||| || | |||| | ||||||||  |||||||||||   ||||||||| || ||||||||||||| ||| || ||||    
T  40585345 taagcactcattgacccatttgttgcgtgagcttgattaatctcatgaaaaccaaaggaaataacttttagagtatttagatactaaaggttaagagtct 40585444  T
Q  118 ttggatgcggttcaaagcttcaagatgtgaatcttggagaaccaaaagagggggctctt 176  Q
    |||| || |||||||||||||||||||||||| || ||||| |||||||| ||||||||    
T  40585445 ttggttgaggttcaaagcttcaagatgtgaatatttgagaatcaaaagagtgggctctt 40585503  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 84 - 231
Target Start/End: Original strand, 40535538 - 40535684
Alignment:
Q  84 ttttagggt-tttagatactaaaagttgagggtctttggatgcggttcaaagcttcaagatgtgaatcttggagaaccaaaagagggggctcttgggaaa 182  Q
    ||||||||| |||||||||||||  |||| ||||||||| ||  |||||||| |||||| |||| |||||  ||||||||||||||||| ||||| | ||    
T  40535538 ttttagggtatttagatactaaagattgatggtctttgggtg--gttcaaagtttcaagttgtggatcttttagaaccaaaagagggggttcttgag-aa 40535634  T
Q  183 agggttggtgcattttggggaaaa-ttcataaggttggaaaacacatgag 231  Q
    ||||||| ||| ||||||  |||| |||||  | ||||||||||||||||    
T  40535635 agggttgatgccttttggataaaagttcatgtgattggaaaacacatgag 40535684  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 137 - 201
Target Start/End: Complemental strand, 10101588 - 10101525
Alignment:
Q  137 tcaagatgtgaatcttggagaaccaaaagagggggctcttgggaaaagggttggtgcattttggg 201  Q
    |||| ||||||| ||||||||||||||||||| |||||||||| ||||||||| |||||||||||    
T  10101588 tcaaaatgtgaaccttggagaaccaaaagaggaggctcttggg-aaagggttgctgcattttggg 10101525  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 108 - 182
Target Start/End: Original strand, 10020150 - 10020224
Alignment:
Q  108 ttgagggtctttggatgcggttcaaagcttcaagatgtgaatcttggagaaccaaaagagggggctcttgggaaa 182  Q
    |||||||||||| | || | ||||||   |||| ||||||||||| |||||||||||||||||||||||||||||    
T  10020150 ttgagggtctttaggtgagattcaaatgatcaatatgtgaatcttagagaaccaaaagagggggctcttgggaaa 10020224  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 66 - 231
Target Start/End: Complemental strand, 3846318 - 3846153
Alignment:
Q  66 gaaaccaaaggaggaaacttttagggtt-ttagatactaaaagttgagggtctttggatgcggttcaaagcttcaagatgtgaatcttggagaaccaaaa 164  Q
    ||||||||||||| ||||||| |||||  || || |||||| |||||||||  |||  || | ||||||| ||||  |||||||||||| ||||||||||    
T  3846318 gaaaccaaaggagaaaactttcagggtactttgaaactaaaggttgagggttcttgagtgagattcaaaggttcataatgtgaatcttgaagaaccaaaa 3846219  T
Q  165 gagggggctcttgggaaaagggttggtgcattttgggga-aaattcataaggttggaaaacacatgag 231  Q
    ||  | |||||| ||||||| |||||||  ||||||||| | ||||||  |||||| |||||||||||    
T  3846218 ga-agagctctt-ggaaaagagttggtgtcttttggggagagattcatggggttgggaaacacatgag 3846153  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 60 - 228
Target Start/End: Complemental strand, 3817840 - 3817670
Alignment:
Q  60 ctcattgaaaccaaaggaggaaacttttagggtt-ttagatactaaaagttgagggtctttggatgcggttcaaagcttcaagatgtgaatcttggagaa 158  Q
    ||||| ||||||||||||| |||||||||||||  ||||| |||||| ||||||||| | ||  |    ||||||| || |||||| || ||||| ||||    
T  3817840 ctcatggaaaccaaaggagaaaacttttagggtacttagaaactaaaggttgagggtttctgagtaaa-ttcaaaggttgaagatgggattcttgaagaa 3817742  T
Q  159 ccaaaagagg--gggctcttgggaaaagggttggtgcattttggggaaa-attcataaggttggaaaacacat 228  Q
    ||||||||    |||||||||| |||||||||||||| |||||| |||| ||||||  |||||||||| ||||    
T  3817741 ccaaaagaattagggctcttgg-aaaagggttggtgccttttggagaaagattcatggggttggaaaatacat 3817670  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 142 - 203
Target Start/End: Original strand, 28461305 - 28461365
Alignment:
Q  142 atgtgaatcttggagaaccaaaagagggggctcttgggaaaagggttggtgcattttgggga 203  Q
    |||||||||||||||||||||||||||  |||||| || ||| ||||||| | |||||||||    
T  28461305 atgtgaatcttggagaaccaaaagaggaagctcttagg-aaatggttggttccttttgggga 28461365  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 54 - 236
Target Start/End: Original strand, 11136796 - 11136979
Alignment:
Q  54 gtgaatctcattgaaaccaaaggaggaaacttttagggtt-ttagatactaaaagttgagggtctttggatgcggttcaaagcttcaagatgtgaatctt 152  Q
    ||||||||||| ||||| |||||| || | ||||||||   ||| | |||||| |||| |||||||||| || | ||||||   || | || ||||| ||    
T  11136796 gtgaatctcatggaaactaaaggatgagatttttagggaacttaaaaactaaaggttgggggtctttgggtgagattcaaattgtccaaatatgaatttt 11136895  T
Q  153 ggagaaccaaaagagggggctcttgggaaaagggttggtgcattttggggaaaa-ttcataaggttggaaaacacatgagtggag 236  Q
    ||||||| ||||||| |||||||||| |||  ||| | ||| ||||||||| |  |||||  ||| |||||||||||||||||||    
T  11136896 ggagaactaaaagagagggctcttgg-aaattggtcgatgccttttggggagaggttcattgggtaggaaaacacatgagtggag 11136979  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 147; Significance: 1e-77; HSPs: 28)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 147; E-Value: 1e-77
Query Start/End: Original strand, 30 - 236
Target Start/End: Original strand, 29135880 - 29136085
Alignment:
Q  30 tgacccatttgttgggtaaacttggtgaatctcattgaaaccaaaggaggaaacttttagggttttagatactaaaagttgagggtctttggatgcggtt 129  Q
    |||||||||||||| |||| ||||||||||||||| |||||||||||||| ||||||||||||||||||||||||| ||||||||||||||  || ||||    
T  29135880 tgacccatttgttgagtaagcttggtgaatctcatggaaaccaaaggagggaacttttagggttttagatactaaaggttgagggtctttgagtgaggtt 29135979  T
Q  130 caaagcttcaagatgtgaatcttggagaaccaaaagagggggctcttgggaaaagggttggtgcattttggggaaaattcataaggttggaaaacacatg 229  Q
    ||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |||||||||| ||||||  |||||||||| |||||    
T  29135980 caaagcttcaagatgtgaatcttggagaaccaaaagaggggactcttgggaaaagggttggtgccttttggggaagattcatggggttggaaaa-acatg 29136078  T
Q  230 agtggag 236  Q
    |||||||    
T  29136079 agtggag 29136085  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 147; E-Value: 1e-77
Query Start/End: Original strand, 19 - 233
Target Start/End: Original strand, 34603197 - 34603411
Alignment:
Q  19 taagcactccatgacccatttgttgggtaaacttggtgaatctcattgaaaccaaaggaggaaacttttagggttttagatactaaaagttgagggtctt 118  Q
    ||||||||| ||||||||||||||||  || ||||||||||||||| |||||||||||||| |||||||||||||||||||| |||| ||||| ||||||    
T  34603197 taagcactctatgacccatttgttggaaaagcttggtgaatctcatggaaaccaaaggagggaacttttagggttttagatattaaaggttgaaggtctt 34603296  T
Q  119 tggatgcggttcaaagcttcaagatgtgaatcttggagaaccaaaagagggggctcttgggaaaagggttggtgcattttggggaaaattcataaggttg 218  Q
    ||| ||  ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |||||||||| ||||||  |||||    
T  34603297 tgggtgatgttcaaagcttcaagatgtgaatcttggagaaccaaaagagggagctcttgggaaaagggttggtgccttttggggaagattcatggggttg 34603396  T
Q  219 gaaaacacatgagtg 233  Q
    |||||||||||||||    
T  34603397 gaaaacacatgagtg 34603411  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 146; E-Value: 5e-77
Query Start/End: Original strand, 19 - 236
Target Start/End: Original strand, 11348319 - 11348536
Alignment:
Q  19 taagcactccatgacccatttgttgggtaaacttggtgaatctcattgaaaccaaaggaggaaacttttagggttttagatactaaaagttgagggtctt 118  Q
    |||| ||||||||||||||||||||||||| ||| ||||||||||| |||||||||||| | ||||||||||||||||||||||||  ||||||||||||    
T  11348319 taagtactccatgacccatttgttgggtaagcttagtgaatctcatggaaaccaaaggatggaacttttagggttttagatactaagggttgagggtctt 11348418  T
Q  119 tggatgcggttcaaagcttcaagatgtgaatcttggagaaccaaaagagggggctcttgggaaaagggttggtgcattttggggaaaattcataaggttg 218  Q
    ||| || ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||  |||||| |||||| ||| ||||||  |||||    
T  11348419 tgggtgaggttcaaagtttcaagatgtgaatcttggagaaccaaaagagggggctcttgggaaaaggtctggtgccttttggagaagattcatggggttg 11348518  T
Q  219 gaaaacacatgagtggag 236  Q
    ||||||||||||||||||    
T  11348519 gaaaacacatgagtggag 11348536  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 143; E-Value: 3e-75
Query Start/End: Original strand, 19 - 233
Target Start/End: Complemental strand, 34602886 - 34602672
Alignment:
Q  19 taagcactccatgacccatttgttgggtaaacttggtgaatctcattgaaaccaaaggaggaaacttttagggttttagatactaaaagttgagggtctt 118  Q
    ||||||||| ||||||||||||||||  || ||||||||||||||| |||||||||||||| |||||||||||||||||||| |||| ||||| ||||||    
T  34602886 taagcactctatgacccatttgttggaaaagcttggtgaatctcatggaaaccaaaggagggaacttttagggttttagatattaaaggttgaaggtctt 34602787  T
Q  119 tggatgcggttcaaagcttcaagatgtgaatcttggagaaccaaaagagggggctcttgggaaaagggttggtgcattttggggaaaattcataaggttg 218  Q
    ||| ||  ||||||||||||||||||||||||||||||||||||||||||| |||||||| |||||||||||||| |||||||||| ||||||  |||||    
T  34602786 tgggtgatgttcaaagcttcaagatgtgaatcttggagaaccaaaagagggagctcttggtaaaagggttggtgccttttggggaagattcatggggttg 34602687  T
Q  219 gaaaacacatgagtg 233  Q
    |||||||||||||||    
T  34602686 gaaaacacatgagtg 34602672  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 142; E-Value: 1e-74
Query Start/End: Original strand, 23 - 236
Target Start/End: Complemental strand, 42298518 - 42298305
Alignment:
Q  23 cactccatgacccatttgttgggtaaacttggtgaatctcattgaaaccaaaggaggaaacttttagggttttagatactaaaagttgagggtctttgga 122  Q
    |||||| ||| ||||||||||||||| ||||||||||| |||   |||||||||| ||||||||||||||||||||||||||| |||||||||||||||     
T  42298518 cactccctgatccatttgttgggtaagcttggtgaatcccataacaaccaaaggatgaaacttttagggttttagatactaaaggttgagggtctttggg 42298419  T
Q  123 tgcggttcaaagcttcaagatgtgaatcttggagaaccaaaagagggggctcttgggaaaagggttggtgcattttggggaaaattcataaggttggaaa 222  Q
    || |||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |||||| ||| ||||||  |||||| ||    
T  42298418 tgaggttcaaagcttcaagatgtgaatcttggagaaccaaaagagggggctcttgtgaaaagggttggtgccttttggagaagattcatggggttgggaa 42298319  T
Q  223 acacatgagtggag 236  Q
    ||||||||||||||    
T  42298318 acacatgagtggag 42298305  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 141; E-Value: 5e-74
Query Start/End: Original strand, 19 - 236
Target Start/End: Complemental strand, 47255881 - 47255669
Alignment:
Q  19 taagcactccatgacccatttgttgggtaaacttggtgaatctcattgaaaccaaaggaggaaacttttagggttttagatactaaaagttgagggtctt 118  Q
    |||||||| ||||||||||||||||||||| ||||||||||||||| |||||||||||||| ||||||||||||||||||||||||| ||||||||||||    
T  47255881 taagcacttcatgacccatttgttgggtaagcttggtgaatctcatggaaaccaaaggagggaacttttagggttttagatactaaaggttgagggtctt 47255782  T
Q  119 tggatgcggttcaaagcttcaagatgtgaatcttggagaaccaaaagagggggctcttgggaaaagggttggtgcattttggggaaaattcataaggttg 218  Q
    ||| || ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||    |||||| |||||||||| ||||||  |||||    
T  47255781 tgggtgaggttcaaagcttcaagatgtgaatcttggagaaccaaaagatggggctcttgggaaaa----tggtgccttttggggaagattcat-gggttg 47255687  T
Q  219 gaaaacacatgagtggag 236  Q
    | |||||||||| |||||    
T  47255686 ggaaacacatgattggag 47255669  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 139; E-Value: 8e-73
Query Start/End: Original strand, 51 - 236
Target Start/End: Complemental strand, 7482746 - 7482560
Alignment:
Q  51 ttggtgaatctcattgaaaccaaaggaggaaacttttagggttttagatactaaaagttgagggtctttggatgcggttcaaagcttcaagatgtgaatc 150  Q
    |||||||||||||| |||||||||||||||||||||||||||||||||||||||  ||||||||||||||| || |||||||||||||||||||||||||    
T  7482746 ttggtgaatctcatggaaaccaaaggaggaaacttttagggttttagatactaacggttgagggtctttgggtgaggttcaaagcttcaagatgtgaatc 7482647  T
Q  151 ttggagaaccaaaagag-ggggctcttgggaaaagggttggtgcattttggggaaaattcataaggttggaaaacacatgagtggag 236  Q
    ||||||||||||||||| |||||||||||||||||||||||||| |||||||||| ||||||  |||||| ||||||||||||||||    
T  7482646 ttggagaaccaaaagaggggggctcttgggaaaagggttggtgccttttggggaagattcatggggttgggaaacacatgagtggag 7482560  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 139; E-Value: 8e-73
Query Start/End: Original strand, 30 - 236
Target Start/End: Complemental strand, 13547625 - 13547419
Alignment:
Q  30 tgacccatttgttgggtaaacttggtgaatctcattgaaaccaaaggaggaaacttttagggttttagatactaaaagttgagggtctttggatgcggtt 129  Q
    ||||||||||||| ||||| ||||||||||||||| |||||||||||||  ||||||||| ||||||||||||||| ||||||||||||||| || ||||    
T  13547625 tgacccatttgtttggtaagcttggtgaatctcatggaaaccaaaggagagaacttttagagttttagatactaaaggttgagggtctttgggtgaggtt 13547526  T
Q  130 caaagcttcaagatgtgaatcttggagaaccaaaagagggggctcttgggaaaagggttggtgcattttggggaaaattcataaggttggaaaacacatg 229  Q
    |||||||||||||||||||||||||| ||||||||||||| ||||||| ||||||||| ||||| ||||| |||||||||||  ||||||||||||||||    
T  13547525 caaagcttcaagatgtgaatcttggataaccaaaagagggagctcttgtgaaaagggtcggtgccttttgaggaaaattcatggggttggaaaacacatg 13547426  T
Q  230 agtggag 236  Q
    |||||||    
T  13547425 agtggag 13547419  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 139; E-Value: 8e-73
Query Start/End: Original strand, 30 - 236
Target Start/End: Complemental strand, 13549536 - 13549330
Alignment:
Q  30 tgacccatttgttgggtaaacttggtgaatctcattgaaaccaaaggaggaaacttttagggttttagatactaaaagttgagggtctttggatgcggtt 129  Q
    ||||||||||||| ||||| ||||||||||||||| |||||||||||||  ||||||||| ||||||||||||||| ||||||||||||||| || ||||    
T  13549536 tgacccatttgtttggtaagcttggtgaatctcatggaaaccaaaggagagaacttttagagttttagatactaaaggttgagggtctttgggtgaggtt 13549437  T
Q  130 caaagcttcaagatgtgaatcttggagaaccaaaagagggggctcttgggaaaagggttggtgcattttggggaaaattcataaggttggaaaacacatg 229  Q
    |||||||||||||||||||||||||| ||||||||||||| ||||||| ||||||||| ||||| ||||| |||||||||||  ||||||||||||||||    
T  13549436 caaagcttcaagatgtgaatcttggataaccaaaagagggagctcttgtgaaaagggtcggtgccttttgaggaaaattcatggggttggaaaacacatg 13549337  T
Q  230 agtggag 236  Q
    |||||||    
T  13549336 agtggag 13549330  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 139; E-Value: 8e-73
Query Start/End: Original strand, 30 - 236
Target Start/End: Complemental strand, 37879447 - 37879241
Alignment:
Q  30 tgacccatttgttgggtaaacttggtgaatctcattgaaaccaaaggaggaaacttttagggttttagatactaaaagttgagggtctttggatgcggtt 129  Q
    ||||||||||||||||||| ||||||||||||||| |||| ||||||| | |||| |||||||||||||||||||| ||||||| ||||||| || ||||    
T  37879447 tgacccatttgttgggtaagcttggtgaatctcatggaaatcaaaggaaggaactgttagggttttagatactaaatgttgaggatctttgggtgaggtt 37879348  T
Q  130 caaagcttcaagatgtgaatcttggagaaccaaaagagggggctcttgggaaaagggttggtgcattttggggaaaattcataaggttggaaaacacatg 229  Q
    |||||||||||||||||||||||||||||| ||||||||||||||||| ||||| ||||||||| |||||||||||||||||  |||||| |||||||||    
T  37879347 caaagcttcaagatgtgaatcttggagaacaaaaagagggggctcttgtgaaaaaggttggtgccttttggggaaaattcatggggttgggaaacacatg 37879248  T
Q  230 agtggag 236  Q
    |||||||    
T  37879247 agtggag 37879241  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 138; E-Value: 3e-72
Query Start/End: Original strand, 19 - 236
Target Start/End: Original strand, 19754112 - 19754329
Alignment:
Q  19 taagcactccatgacccatttgttgggtaaacttggtgaatctcattgaaaccaaaggaggaaacttttagggttttagatactaaaagttgagggtctt 118  Q
    |||||||||||||||||||||||||||||| ||||||||||||||| |||||||||||||| ||||||||||||| ||||||||||| ||| ||||||||    
T  19754112 taagcactccatgacccatttgttgggtaagcttggtgaatctcatggaaaccaaaggagggaacttttagggttctagatactaaaggttaagggtctt 19754211  T
Q  119 tggatgcggttcaaagcttcaagatgtgaatcttggagaaccaaaagagggggctcttgggaaaagggttggtgcattttggggaaaattcataaggttg 218  Q
    ||| || ||||||||||  || ||| ||||||||||| |||||| |||||||||||||| ||||||||||||||| |||||||||| ||||||  |||||    
T  19754212 tgggtgaggttcaaagcaccatgatttgaatcttggaaaaccaagagagggggctcttgtgaaaagggttggtgccttttggggaagattcatggggttg 19754311  T
Q  219 gaaaacacatgagtggag 236  Q
    | ||||||||||||||||    
T  19754312 ggaaacacatgagtggag 19754329  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 134; E-Value: 7e-70
Query Start/End: Original strand, 30 - 236
Target Start/End: Complemental strand, 37033605 - 37033403
Alignment:
Q  30 tgacccatttgttgggtaaacttggtgaatctcattgaaaccaaaggaggaaacttttagggttttagatactaaaagttgagggtctttggatgcggtt 129  Q
    |||||| ||||||| |||| || |||||||||||| |||||||||||||| ||||||||||||||||    ||||| ||||||||||||||| || ||||    
T  37033605 tgacccttttgttgagtaagctgggtgaatctcatggaaaccaaaggagggaacttttagggtttta----ctaaaggttgagggtctttgggtgaggtt 37033510  T
Q  130 caaagcttcaagatgtgaatcttggagaaccaaaagagggggctcttgggaaaagggttggtgcattttggggaaaattcataaggttggaaaacacatg 229  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |||| |||||| ||||||| |||||||||    
T  37033509 caaagcttcaagatgtgaatcttggagaaccaaaagagggggctcttgggaaaagggttggtgccttttgaggaagattcatgaggttgggaaacacatg 37033410  T
Q  230 agtggag 236  Q
    |||||||    
T  37033409 agtggag 37033403  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 127; E-Value: 1e-65
Query Start/End: Original strand, 51 - 236
Target Start/End: Original strand, 28242041 - 28242226
Alignment:
Q  51 ttggtgaatctcattgaaaccaaaggaggaaacttttagggttt-tagatactaaaagttgagggtctttggatgcggttcaaagcttcaagatgtgaat 149  Q
    ||||||||||||||  ||||||||||||| |||||||||||| | ||||||||||| ||||||||||||||| || ||||||||||||||| ||||||||    
T  28242041 ttggtgaatctcatgaaaaccaaaggagggaacttttagggtatgtagatactaaaggttgagggtctttgggtgaggttcaaagcttcaaaatgtgaat 28242140  T
Q  150 cttggagaaccaaaagagggggctcttgggaaaagggttggtgcattttggggaaaattcataaggttggaaaacacatgagtggag 236  Q
    |||||||||||||||||||||||||||||||||||||||||||| |||| ||||| |||||||||||||| ||||||||||||||||    
T  28242141 cttggagaaccaaaagagggggctcttgggaaaagggttggtgcctttt-gggaagattcataaggttgggaaacacatgagtggag 28242226  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 127; E-Value: 1e-65
Query Start/End: Original strand, 50 - 236
Target Start/End: Original strand, 37167949 - 37168135
Alignment:
Q  50 cttggtgaatctcattgaaaccaaaggaggaaacttttagggttttagatactaaaagttgagggtctttggatgcggttcaaagcttcaagatgtgaat 149  Q
    ||||| ||||||||| |||| ||||||||| ||||||||  ||||||||||||||| ||||||||| ||||| || ||||||||||||||||||||||||    
T  37167949 cttggggaatctcatggaaatcaaaggagggaacttttacagttttagatactaaaggttgagggtttttgggtgaggttcaaagcttcaagatgtgaat 37168048  T
Q  150 cttggagaaccaaaagagggggctcttgggaaaagggttggtgcattttggggaaaattcataaggttggaaaacacatgagtggag 236  Q
    |||||||||||||||||||||||||||||||||||||||||||| |||||||||| ||||||  |||||| ||||||||||||||||    
T  37168049 cttggagaaccaaaagagggggctcttgggaaaagggttggtgccttttggggaagattcatggggttgggaaacacatgagtggag 37168135  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 124; E-Value: 7e-64
Query Start/End: Original strand, 30 - 229
Target Start/End: Original strand, 193244 - 193442
Alignment:
Q  30 tgacccatttgttgggtaaacttggtgaatctcattgaaaccaaaggaggaaacttttagggttttagatactaaaagttgagggtctttggatgcggtt 129  Q
    ||||||||||||||||||| ||||||||||||||| |||||||||||||  |||||||||||||||||||| |||| ||||||||||||| | || ||||    
T  193244 tgacccatttgttgggtaagcttggtgaatctcatggaaaccaaaggagataacttttagggttttagatattaaaggttgagggtctttcggtgaggtt 193343  T
Q  130 caaagcttcaagatgtgaatcttggagaaccaaaagagggggctcttgggaaaagggttggtgcattttggggaaaattcataaggttggaaaacacatg 229  Q
    |||||||||| ||||||||||||||||||||||||||||||||||||||| ||| ||||||||| |||| ||||| ||||||  |||||| |||||||||    
T  193344 caaagcttcatgatgtgaatcttggagaaccaaaagagggggctcttggggaaaaggttggtgcctttt-gggaagattcatggggttgggaaacacatg 193442  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 118; E-Value: 3e-60
Query Start/End: Original strand, 19 - 236
Target Start/End: Original strand, 19752307 - 19752523
Alignment:
Q  19 taagcactccatgacccatttgttgggtaaacttggtgaatctcattgaaaccaaaggaggaaacttttagggttttagatactaaaagttgagggtctt 118  Q
    |||||||||||||||||||||||||||||| |||||||||||||||  |||||||| |||| || |||||||||||||||||||||| ||||| ||||||    
T  19752307 taagcactccatgacccatttgttgggtaagcttggtgaatctcatgaaaaccaaatgagggaatttttagggttttagatactaaaggttgaaggtctt 19752406  T
Q  119 tggatgcggttcaaagcttcaagatgtgaatcttggagaaccaaaagagggggctcttgggaaaagggttggtgcattttggggaaaattcataaggttg 218  Q
    ||| || ||||| |||| |||  ||||||||||||||||||||||||| |||||||||  ||||| ||||||||| |||||||||| ||||||   ||||    
T  19752407 tgggtgaggttctaagcgtcataatgtgaatcttggagaaccaaaagatggggctcttatgaaaa-ggttggtgccttttggggaagattcattgagttg 19752505  T
Q  219 gaaaacacatgagtggag 236  Q
    | ||||||||||||||||    
T  19752506 ggaaacacatgagtggag 19752523  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 106; E-Value: 4e-53
Query Start/End: Original strand, 51 - 236
Target Start/End: Original strand, 47114825 - 47115009
Alignment:
Q  51 ttggtgaatctcattgaaaccaaaggaggaaacttttagggttttagatactaaaagttgagggtctttggatgcggttcaaagcttcaagatgtgaatc 150  Q
    |||||||||||||| |||||||||||||| |||||||| || |||||||| ||||  |||||||||||||| || |||||||||||||||| ||||||||    
T  47114825 ttggtgaatctcatggaaaccaaaggagggaacttttaaggctttagatattaaagattgagggtctttgggtgaggttcaaagcttcaagctgtgaatc 47114924  T
Q  151 ttggagaaccaaaagagggggctcttgggaaaagggttggtgcattttggggaaaattcataaggttggaaaacacatgagtggag 236  Q
    ||||||||||||||||||||||||||||||| ||||||||| | |||| ||||| ||||||  |||||| |||||||||| |||||    
T  47114925 ttggagaaccaaaagagggggctcttgggaacagggttggtacctttt-gggaagattcatggggttgggaaacacatgaatggag 47115009  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 82; E-Value: 8e-39
Query Start/End: Original strand, 35 - 178
Target Start/End: Original strand, 6808083 - 6808228
Alignment:
Q  35 catttgttgggtaaacttggtgaatctcattgaaaccaaaggaggaaacttttag-ggttttagatactaaaagttga-gggtctttggatgcggttcaa 132  Q
    ||||||||| |||| ||||||||||||||| ||||||||||||||||||||||||   |||||||||||||| ||||| |||||||| | || |||||||    
T  6808083 catttgttgagtaagcttggtgaatctcatggaaaccaaaggaggaaacttttagattttttagatactaaaggttgaggggtctttaggtgaggttcaa 6808182  T
Q  133 agcttcaagatgtgaatcttggagaaccaaaagagggggctcttgg 178  Q
    | ||||||||||||||||||||||||||||||||  ||||||||||    
T  6808183 aacttcaagatgtgaatcttggagaaccaaaagattgggctcttgg 6808228  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 77; E-Value: 8e-36
Query Start/End: Original strand, 30 - 228
Target Start/End: Original strand, 41135452 - 41135651
Alignment:
Q  30 tgacccatttgttgggtaaacttggtgaatctcattgaaaccaaaggaggaaacttttagggt-tttagatactaaaagttgagggtctttggatgcggt 128  Q
    ||||||||||||||  ||| |||||| |||||||| |||||||||||||| || |||||  || ||||||||||||| ||||||||||||||| || |||    
T  41135452 tgacccatttgttgaataagcttggttaatctcatggaaaccaaaggagggaaattttaatgtatttagatactaaaggttgagggtctttgggtgaggt 41135551  T
Q  129 tcaaagcttcaagatgtgaatcttggagaaccaaaagagggggctcttgggaaaagggttggtgcattttgggga-aaattcataaggttggaaaacaca 227  Q
    ||||| |||||||||||| |||||||||||||||||||||  | | ||||| | ||||||||||| |||| |||| | ||||||  |||||| |||||||    
T  41135552 tcaaaccttcaagatgtggatcttggagaaccaaaagaggaagattttggg-agagggttggtgccttttagggagagattcatggggttgggaaacaca 41135650  T

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Target: chr1; HSP #20
Raw Score: 76; E-Value: 3e-35
Query Start/End: Original strand, 19 - 166
Target Start/End: Complemental strand, 31928348 - 31928208
Alignment:
Q  19 taagcactccatgacccatttg-ttgggtaaacttggtgaatctcattgaaaccaaaggaggaaacttttagggttttagatactaaaagttgagggtct 117  Q
    |||||||||||||||||||||| |||||||| |||||||||| |||| |||||||||||||| |||||||||        |||||||| |||||| ||||    
T  31928348 taagcactccatgacccatttgattgggtaagcttggtgaatttcatggaaaccaaaggagggaacttttag--------atactaaaggttgagagtct 31928257  T
Q  118 ttggatgcggttcaaagcttcaagatgtgaatcttggagaaccaaaaga 166  Q
    ||||||| ||||||||||||||||||||||||||| || ||||||||||    
T  31928256 ttggatgaggttcaaagcttcaagatgtgaatcttagaaaaccaaaaga 31928208  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 19 - 228
Target Start/End: Complemental strand, 9109949 - 9109739
Alignment:
Q  19 taagcactccatgacccatttgttgggtaaacttggtgaatctcattgaaaccaaaggaggaaacttttagggttt-tagatactaaaagttgagggtct 117  Q
    |||||| ||| |||||||||| ||| |  |||||||||||| |||| |||| |||| || ||||||||| |||| | || |||||||| ||||||||| |    
T  9109949 taagcaatccttgacccatttattgagacaacttggtgaatgtcatggaaatcaaatgatgaaacttttggggtatataaatactaaaggttgagggtat 9109850  T
Q  118 ttggatgcggttcaaagcttcaagatgtgaatcttggagaaccaaaagagggggctcttgggaaaagggttggtgcattttgggga-aaattcataaggt 216  Q
    |||| || |||||||| |||||||||||||||||||||||||||||| ||||| ||| |||| | ||||||| ||  ||||||||| | |||||| ||||    
T  9109849 ttgggtgaggttcaaaacttcaagatgtgaatcttggagaaccaaaaaaggggactcatggg-agagggttgatgtcttttggggagagattcatgaggt 9109751  T
Q  217 tggaaaacacat 228  Q
    ||| | ||||||    
T  9109750 tgggagacacat 9109739  T

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Target: chr1; HSP #22
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 93 - 200
Target Start/End: Complemental strand, 16216966 - 16216860
Alignment:
Q  93 tttagatactaaaagttgagggtctttggatgcggttcaaagcttcaagatgtgaatcttggagaaccaaaagagggggctcttgggaaaagggttggtg 192  Q
    |||||| |||||| ||| ||||||||||| ||   ||||||| ||||||||||  |||||| ||||||||||||||||||||||  ||||||||||||||    
T  16216966 tttagaaactaaaggttaagggtctttgggtgatattcaaaggttcaagatgtatatcttgaagaaccaaaagagggggctctt-cgaaaagggttggtg 16216868  T
Q  193 cattttgg 200  Q
    ||||||||    
T  16216867 cattttgg 16216860  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #23
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 108 - 172
Target Start/End: Original strand, 22079045 - 22079109
Alignment:
Q  108 ttgagggtctttggatgcggttcaaagcttcaagatgtgaatcttggagaaccaaaagagggggc 172  Q
    |||||||||||||| || |||||||||||||||||||||||||||  ||||||||||||||||||    
T  22079045 ttgagggtctttgggtgaggttcaaagcttcaagatgtgaatcttaaagaaccaaaagagggggc 22079109  T

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Target: chr1; HSP #24
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 101 - 227
Target Start/End: Original strand, 6068321 - 6068447
Alignment:
Q  101 ctaaaagttgagggtctttggatgcggttcaaagcttcaagatgtgaatcttggagaaccaaaagagggggctcttgggaaaagggttggtgcattttgg 200  Q
    |||||||||||||||||||||||| | ||||||   | |||| ||||||||  | ||||||||||||||||||||| |||||| ||||||||  ||||||    
T  6068321 ctaaaagttgagggtctttggatgagattcaaatgatgaagacgtgaatctaagggaaccaaaagagggggctcttaggaaaa-ggttggtgtcttttgg 6068419  T
Q  201 gga-aaattcataaggttggaaaacaca 227  Q
    | | | |||||||||||||| |||||||    
T  6068420 gaagagattcataaggttgggaaacaca 6068447  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #25
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 101 - 203
Target Start/End: Complemental strand, 28318225 - 28318122
Alignment:
Q  101 ctaaaagttgagggtctttggatgcggttcaaagct-tcaagatgtgaatcttggagaaccaaaagag-ggggctcttgggaaaagggttggtgcatttt 198  Q
    ||||||||||||| |||||||||| | |||||||   ||||||||||||| ||||| ||||||||||| |||| |||||||||| ||||| |||||||||    
T  28318225 ctaaaagttgaggatctttggatgagtttcaaaggggtcaagatgtgaattttggataaccaaaagagaggggttcttgggaaa-gggttagtgcatttt 28318127  T
Q  199 gggga 203  Q
    |||||    
T  28318126 gggga 28318122  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #26
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 137 - 182
Target Start/End: Original strand, 3331283 - 3331328
Alignment:
Q  137 tcaagatgtgaatcttggagaaccaaaagagggggctcttgggaaa 182  Q
    |||||||||||||||| |||||||||||||||||||||||||||||    
T  3331283 tcaagatgtgaatcttagagaaccaaaagagggggctcttgggaaa 3331328  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #27
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 173 - 236
Target Start/End: Complemental strand, 31926099 - 31926036
Alignment:
Q  173 tcttgggaaaagggttggtgcattttggggaaaattcataaggttggaaaacacatgagtggag 236  Q
    ||||| ||||||||||||||| |||||||||| ||||||  | |||| |||||| |||||||||    
T  31926099 tcttgtgaaaagggttggtgccttttggggaagattcatgggtttgggaaacacgtgagtggag 31926036  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #28
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 137 - 230
Target Start/End: Complemental strand, 38747144 - 38747052
Alignment:
Q  137 tcaagatgtgaatcttggagaaccaaaagagggggctcttgggaaaagggttggtgcattttggggaaaa-ttcataaggttggaaaacacatga 230  Q
    ||||||| |||||||| || ||||||||  |||||||||||  |||||||||||||| |||||| || |  |||||| |||||||||||||||||    
T  38747144 tcaagatatgaatcttagacaaccaaaac-gggggctcttga-aaaagggttggtgccttttggagagaggttcatagggttggaaaacacatga 38747052  T

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Target: scaffold0014 (Bit Score: 133; Significance: 3e-69; HSPs: 1)
Name: scaffold0014
Description:

Target: scaffold0014; HSP #1
Raw Score: 133; E-Value: 3e-69
Query Start/End: Original strand, 32 - 236
Target Start/End: Complemental strand, 80817 - 80613
Alignment:
Q  32 acccatttgttgggtaaacttggtgaatctcattgaaaccaaaggaggaaacttttagggttttagatactaaaagttgagggtctttggatgcggttca 131  Q
    |||||||||||||  || ||||||||||||||| |||||||||||||| ||||||||||||||||||||||| | ||||||||||||||| || ||||||    
T  80817 acccatttgttggaaaatcttggtgaatctcatggaaaccaaaggagggaacttttagggttttagatactagaggttgagggtctttgggtgaggttca 80718  T
Q  132 aagcttcaagatgtgaatcttggagaaccaaaagagggggctcttgggaaaagggttggtgcattttggggaaaattcataaggttggaaaacacatgag 231  Q
    |||||||||||| ||||||||||||||||||||||||||||||||  ||||||||||||||| |||||||||| ||||||  |||||| |||||||||||    
T  80717 aagcttcaagatttgaatcttggagaaccaaaagagggggctcttatgaaaagggttggtgccttttggggaagattcatggggttgggaaacacatgag 80618  T
Q  232 tggag 236  Q
     ||||    
T  80617 cggag 80613  T

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Target: scaffold0176 (Bit Score: 131; Significance: 5e-68; HSPs: 1)
Name: scaffold0176
Description:

Target: scaffold0176; HSP #1
Raw Score: 131; E-Value: 5e-68
Query Start/End: Original strand, 19 - 236
Target Start/End: Complemental strand, 18547 - 18331
Alignment:
Q  19 taagcactccatgacccatttgttgggtaaacttggtgaatctcattgaaaccaaaggaggaaacttttagggttttagatactaaaagttgagggtctt 118  Q
    |||||| |||||||| |||||||||||||| || |||||||||||| ||||||||||||| |||||| |||| |||||||||||||| |||| |||||||    
T  18547 taagcagtccatgacacatttgttgggtaagctgggtgaatctcatggaaaccaaaggagaaaacttatagg-ttttagatactaaaggttgcgggtctt 18449  T
Q  119 tggatgcggttcaaagcttcaagatgtgaatcttggagaaccaaaagagggggctcttgggaaaagggttggtgcatttt-ggggaaaattcataaggtt 217  Q
    ||| || |||||||||||||||||||||||||||||||||| ||||||||||||||||| ||||||||||||||| |||| |||||| |||||| |||||    
T  18448 tgggtgaggttcaaagcttcaagatgtgaatcttggagaacaaaaagagggggctcttgtgaaaagggttggtgccttttgggggaagattcatgaggtt 18349  T
Q  218 ggaaaacacatgagtggag 236  Q
     ||||||||||||||||||    
T  18348 -gaaaacacatgagtggag 18331  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0002 (Bit Score: 89; Significance: 5e-43; HSPs: 1)
Name: scaffold0002
Description:

Target: scaffold0002; HSP #1
Raw Score: 89; E-Value: 5e-43
Query Start/End: Original strand, 30 - 193
Target Start/End: Complemental strand, 490981 - 490818
Alignment:
Q  30 tgacccatttgttgggtaaacttggtgaatctcattgaaaccaaaggaggaaacttttagggttt-tagatactaaaagttgagggtctttggatgcggt 128  Q
    |||||||||||||| | || |||||||||||||||   |||||||||||| | |||||||||| | ||||||||||| ||||||||||||||| || |||    
T  490981 tgacccatttgttgagcaagcttggtgaatctcatgagaaccaaaggagggagcttttagggtatgtagatactaaaggttgagggtctttgggtgaggt 490882  T
Q  129 tcaaagcttcaagatgtgaatcttggagaaccaaaagagggggctcttgggaaaagggttggtgc 193  Q
    |||||||||||||||||||||||||||||||||||| ||||||||||| || | |||||||||||    
T  490881 tcaaagcttcaagatgtgaatcttggagaaccaaaaaagggggctctttgg-agagggttggtgc 490818  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0197 (Bit Score: 82; Significance: 8e-39; HSPs: 1)
Name: scaffold0197
Description:

Target: scaffold0197; HSP #1
Raw Score: 82; E-Value: 8e-39
Query Start/End: Original strand, 19 - 179
Target Start/End: Complemental strand, 1953 - 1792
Alignment:
Q  19 taagcactccatgacccatttgttgggtaaacttggtgaatctcattgaaaccaaaggaggaaacttttagggt-tttagatactaaaagttgagggtct 117  Q
    |||||||||| ||||| |||||||  ||||||||||||||| | || ||||||||| |||  |||||||||||| ||||||||||||| ||||| |||||    
T  1953 taagcactccttgacctatttgttaagtaaacttggtgaattttatggaaaccaaatgagagaacttttagggtatttagatactaaaggttgaaggtct 1854  T
Q  118 ttggatgcggttcaaagcttcaagatgtgaatcttggagaaccaaaagagggggctcttggg 179  Q
    |||| || | | |||||||||||||||||||||||| |||||||||||||||| ||||||||    
T  1853 ttgggtgagctccaaagcttcaagatgtgaatcttgaagaaccaaaagaggggactcttggg 1792  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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