View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF16676_high_35 (Length: 250)

Name: NF16676_high_35
Description: NF16676
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF16676_high_35
NF16676_high_35
[»] chr1 (9 HSPs)
chr1 (13-243)||(51756950-51757180)
chr1 (89-218)||(51854592-51854721)
chr1 (32-143)||(51858324-51858438)
chr1 (90-144)||(51221481-51221535)
chr1 (82-132)||(51763202-51763252)
chr1 (100-144)||(51782519-51782563)
chr1 (174-226)||(51829374-51829426)
chr1 (187-222)||(51757222-51757257)
chr1 (85-135)||(51381727-51381777)
[»] chr6 (3 HSPs)
chr6 (15-221)||(4744053-4744262)
chr6 (15-142)||(4183209-4183336)
chr6 (168-221)||(4183368-4183421)
[»] chr3 (3 HSPs)
chr3 (91-144)||(43997282-43997335)
chr3 (90-133)||(784073-784116)
chr3 (90-137)||(9608627-9608674)
[»] chr2 (1 HSPs)
chr2 (97-133)||(7168974-7169010)


Alignment Details
Target: chr1 (Bit Score: 215; Significance: 1e-118; HSPs: 9)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 215; E-Value: 1e-118
Query Start/End: Original strand, 13 - 243
Target Start/End: Original strand, 51756950 - 51757180
Alignment:
Q  13 ttactacgcccatcatgtgccaaccaattagcagcgtcactcacaaatattccaggtcttggaacggggtaatgatttgggaagtcctggatccttctcc 112  Q
    |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  51756950 ttactacgccgatcatgtgccaaccaattagcagcgtcactcacaaatattccaggtcttggaacggggtaatgatttgggaagtcctggatccttctcc 51757049  T
Q  113 aataatcggtacccaaagtatgaacgttaactactttgttgtggttattgcatgaagaaatagcaataatcttgtaattatcagtgaaacgatcgtagac 212  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||    
T  51757050 aataatcggtacccaaagtatgaacgttaactactttgttgtggttattgcatgaagaaatagcaataatcttgtaattattagtgaaacgatcgtagac 51757149  T
Q  213 taaggtaaaagttgattaatattacttctca 243  Q
    |||||||||||||||| |||||| |||||||    
T  51757150 taaggtaaaagttgatgaatatttcttctca 51757180  T

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Target: chr1; HSP #2
Raw Score: 62; E-Value: 7e-27
Query Start/End: Original strand, 89 - 218
Target Start/End: Complemental strand, 51854721 - 51854592
Alignment:
Q  89 ttgggaagtcctggatccttctccaataatcggtacccaaagtatgaacgttaactactttgttgtggttattgcatgaagaaatagcaataatcttgta 188  Q
    |||| |||||||||||| ||||||||||||||||||||||||||||| | |||||| ||||||| || ||||| | |||| ||| |||||||| ||| ||    
T  51854721 ttggaaagtcctggatctttctccaataatcggtacccaaagtatgagcattaacttctttgttttgattatttcttgaataaagagcaataaccttata 51854622  T
Q  189 attatcagtgaaacgatcgtagactaaggt 218  Q
    |||||  ||||||||||| || ||||||||    
T  51854621 attattggtgaaacgatcataaactaaggt 51854592  T

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Target: chr1; HSP #3
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 32 - 143
Target Start/End: Complemental strand, 51858438 - 51858324
Alignment:
Q  32 ccaaccaattagcagcgtcactcacaaatattccaggtcttggaacggggtaatgat---ttgggaagtcctggatccttctccaataatcggtacccaa 128  Q
    ||||||||||| ||| |||||||| | ||||||| ||  || ||||| |||||| ||   |||| |||||||| ||| ||||||||||||||||||||||    
T  51858438 ccaaccaattaacagtgtcactcaaagatattcccggattttgaacgaggtaataatgctttggaaagtcctgaatctttctccaataatcggtacccaa 51858339  T
Q  129 agtatgaacgttaac 143  Q
    ||||||||| |||||    
T  51858338 agtatgaacattaac 51858324  T

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Target: chr1; HSP #4
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 90 - 144
Target Start/End: Original strand, 51221481 - 51221535
Alignment:
Q  90 tgggaagtcctggatccttctccaataatcggtacccaaagtatgaacgttaact 144  Q
    ||||||||| | |||| ||||||||||||||||||||||||||||||| ||||||    
T  51221481 tgggaagtcatcgatctttctccaataatcggtacccaaagtatgaacattaact 51221535  T

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Target: chr1; HSP #5
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 82 - 132
Target Start/End: Original strand, 51763202 - 51763252
Alignment:
Q  82 taatgatttgggaagtcctggatccttctccaataatcggtacccaaagta 132  Q
    ||||| ||||| |||||||||||| ||||||||||||||||||||||||||    
T  51763202 taatgctttggaaagtcctggatctttctccaataatcggtacccaaagta 51763252  T

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Target: chr1; HSP #6
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 100 - 144
Target Start/End: Complemental strand, 51782563 - 51782519
Alignment:
Q  100 tggatccttctccaataatcggtacccaaagtatgaacgttaact 144  Q
    ||||||||| |||||| || |||||||||||||||||||||||||    
T  51782563 tggatccttttccaattataggtacccaaagtatgaacgttaact 51782519  T

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Target: chr1; HSP #7
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 174 - 226
Target Start/End: Complemental strand, 51829426 - 51829374
Alignment:
Q  174 agcaataatcttgtaattatcagtgaaacgatcgtagactaaggtaaaagttg 226  Q
    |||||||||||| ||||||| |||||||||||| || ||||||||||| ||||    
T  51829426 agcaataatcttataattatgagtgaaacgatcatacactaaggtaaaggttg 51829374  T

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Target: chr1; HSP #8
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 187 - 222
Target Start/End: Original strand, 51757222 - 51757257
Alignment:
Q  187 taattatcagtgaaacgatcgtagactaaggtaaaa 222  Q
    ||||||| ||||||||||||||||||||||||||||    
T  51757222 taattattagtgaaacgatcgtagactaaggtaaaa 51757257  T

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Target: chr1; HSP #9
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 85 - 135
Target Start/End: Original strand, 51381727 - 51381777
Alignment:
Q  85 tgatttgggaagtcctggatccttctccaataatcggtacccaaagtatga 135  Q
    |||| ||||| |||||| |||||| |||||||||| |||||||||||||||    
T  51381727 tgatatgggatgtcctgaatccttttccaataatcagtacccaaagtatga 51381777  T

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Target: chr6 (Bit Score: 52; Significance: 6e-21; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 15 - 221
Target Start/End: Original strand, 4744053 - 4744262
Alignment:
Q  15 actacgcccatcatgtgccaaccaattagcagcgtcactcacaaatattccaggtcttggaacggggtaatgatttgggaagtcctggatccttctccaa 114  Q
    |||||| ||||||| || |||||||| |   | |||||||| |||||||||||||| | ||| | ||| |||||||||||| || || |||| | |||||    
T  4744053 actacgaccatcatatggcaaccaatgaagcgagtcactcaaaaatattccaggtccttgaatgaggtgatgatttgggaaatcatgaatccctttccaa 4744152  T
Q  115 taatcggtacccaaagtatgaacgttaactact---ttgttgtggttattgcatgaagaaatagcaataatcttgtaattatcagtgaaacgatcgtaga 211  Q
    ||||||||||||||||||||||| |||| | ||   || || || | || || |  ||||| ||| |||||||| ||||||  |||||||||||| ||||    
T  4744153 taatcggtacccaaagtatgaacattaatttctctgtttttttgataatcgcgtacagaaagagcgataatcttataattagaagtgaaacgatcataga 4744252  T
Q  212 ctaaggtaaa 221  Q
    ||||||||||    
T  4744253 ctaaggtaaa 4744262  T

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Target: chr6; HSP #2
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 15 - 142
Target Start/End: Original strand, 4183209 - 4183336
Alignment:
Q  15 actacgcccatcatgtgccaaccaattagcagcgtcactcacaaatattccaggtcttggaacggggtaatgatttgggaagtcctggatccttctccaa 114  Q
    |||||| ||||||| || |||||||| |   | |||||||| ||||||||| |||| | ||| | ||| | |||||||||| || || |||| | |||||    
T  4183209 actacgaccatcatatggcaaccaatgaagcgagtcactcaaaaatattcccggtccttgaatgaggtgacgatttgggaaatcatgaatccctttccaa 4183308  T
Q  115 taatcggtacccaaagtatgaacgttaa 142  Q
    ||||||||||||||||||||||| ||||    
T  4183309 taatcggtacccaaagtatgaacattaa 4183336  T

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Target: chr6; HSP #3
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 168 - 221
Target Start/End: Original strand, 4183368 - 4183421
Alignment:
Q  168 agaaatagcaataatcttgtaattatcagtgaaacgatcgtagactaaggtaaa 221  Q
    ||||| ||| |||||||| ||||||  |||||||||||| ||||||||||||||    
T  4183368 agaaagagcgataatcttataattagaagtgaaacgatcatagactaaggtaaa 4183421  T

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Target: chr3 (Bit Score: 38; Significance: 0.000000000001; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 91 - 144
Target Start/End: Complemental strand, 43997335 - 43997282
Alignment:
Q  91 gggaagtcctggatccttctccaataatcggtacccaaagtatgaacgttaact 144  Q
    ||||||||||||||||| ||||||||||  ||||||||||||||||| ||||||    
T  43997335 gggaagtcctggatcctcctccaataattagtacccaaagtatgaacattaact 43997282  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 90 - 133
Target Start/End: Original strand, 784073 - 784116
Alignment:
Q  90 tgggaagtcctggatccttctccaataatcggtacccaaagtat 133  Q
    ||||||||| |||||||| |||||| ||||||||||||||||||    
T  784073 tgggaagtcttggatcctcctccaagaatcggtacccaaagtat 784116  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 90 - 137
Target Start/End: Original strand, 9608627 - 9608674
Alignment:
Q  90 tgggaagtcctggatccttctccaataatcggtacccaaagtatgaac 137  Q
    ||||||||| || ||||||||||||||||| || ||||||||||||||    
T  9608627 tgggaagtcttgtatccttctccaataatcagtgcccaaagtatgaac 9608674  T

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Target: chr2 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 97 - 133
Target Start/End: Original strand, 7168974 - 7169010
Alignment:
Q  97 tcctggatccttctccaataatcggtacccaaagtat 133  Q
    ||||| |||||||||||||||||||| ||||||||||    
T  7168974 tcctgaatccttctccaataatcggtgcccaaagtat 7169010  T

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