View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF16676_high_42 (Length: 212)

Name: NF16676_high_42
Description: NF16676
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF16676_high_42
NF16676_high_42
[»] scaffold0257 (1 HSPs)
scaffold0257 (16-212)||(23477-23673)
[»] chr6 (11 HSPs)
chr6 (16-212)||(19996562-19996758)
chr6 (180-212)||(1605589-1605621)
chr6 (180-212)||(7761311-7761343)
chr6 (180-212)||(29260202-29260234)
chr6 (180-212)||(30734718-30734750)
chr6 (169-212)||(8626492-8626535)
chr6 (181-212)||(13757218-13757249)
chr6 (174-207)||(31559965-31559998)
chr6 (180-212)||(15064929-15064961)
chr6 (180-212)||(17942453-17942485)
chr6 (180-212)||(30734843-30734875)
[»] chr5 (7 HSPs)
chr5 (16-212)||(15305062-15305255)
chr5 (169-212)||(12807077-12807120)
chr5 (180-212)||(16983268-16983300)
chr5 (180-212)||(25773659-25773691)
chr5 (180-212)||(30720727-30720759)
chr5 (52-90)||(31485620-31485658)
chr5 (180-212)||(40886845-40886877)
[»] chr2 (7 HSPs)
chr2 (48-212)||(34224257-34224421)
chr2 (180-212)||(1102513-1102545)
chr2 (180-212)||(3518918-3518950)
chr2 (180-212)||(12969974-12970006)
chr2 (180-212)||(23366799-23366831)
chr2 (180-212)||(37673972-37674004)
chr2 (180-212)||(39938180-39938212)
[»] chr1 (16 HSPs)
chr1 (48-212)||(13984870-13985034)
chr1 (48-212)||(3943070-3943234)
chr1 (48-212)||(41959088-41959252)
chr1 (48-212)||(9588680-9588844)
chr1 (52-211)||(44228112-44228270)
chr1 (82-212)||(1168371-1168499)
chr1 (178-212)||(47038083-47038117)
chr1 (180-212)||(284343-284375)
chr1 (180-212)||(23045514-23045546)
chr1 (180-212)||(27211199-27211231)
chr1 (180-212)||(46771647-46771679)
chr1 (181-212)||(44227858-44227889)
chr1 (169-211)||(23526251-23526293)
chr1 (180-212)||(321636-321668)
chr1 (180-212)||(24772140-24772172)
chr1 (180-212)||(40783892-40783924)
[»] chr8 (17 HSPs)
chr8 (50-212)||(10646602-10646764)
chr8 (48-212)||(8697777-8697941)
chr8 (48-212)||(41307840-41308004)
chr8 (48-212)||(45278580-45278744)
chr8 (48-212)||(40486332-40486496)
chr8 (180-212)||(2540166-2540198)
chr8 (180-212)||(3585461-3585493)
chr8 (180-212)||(11646560-11646592)
chr8 (180-212)||(27035007-27035039)
chr8 (180-212)||(40918964-40918996)
chr8 (180-212)||(43275632-43275664)
chr8 (178-212)||(36068090-36068124)
chr8 (180-212)||(7146923-7146955)
chr8 (180-212)||(11174458-11174490)
chr8 (180-212)||(30999756-30999788)
chr8 (180-212)||(37345581-37345613)
chr8 (180-212)||(40058538-40058570)
[»] chr7 (8 HSPs)
chr7 (48-212)||(25060012-25060176)
chr7 (48-211)||(2911427-2911590)
chr7 (180-212)||(10981518-10981550)
chr7 (180-212)||(25614586-25614618)
chr7 (180-212)||(27813821-27813853)
chr7 (180-212)||(36453359-36453391)
chr7 (180-212)||(40348970-40349002)
chr7 (180-211)||(47110462-47110493)
[»] chr3 (19 HSPs)
chr3 (48-212)||(12094592-12094756)
chr3 (48-212)||(44277334-44277498)
chr3 (48-212)||(19911519-19911683)
chr3 (63-212)||(38805255-38805404)
chr3 (52-212)||(40931632-40931792)
chr3 (69-212)||(4226717-4226856)
chr3 (69-212)||(4235761-4235900)
chr3 (180-212)||(198865-198897)
chr3 (180-212)||(29375148-29375180)
chr3 (180-212)||(32835191-32835223)
chr3 (180-212)||(36881292-36881324)
chr3 (180-212)||(43750147-43750179)
chr3 (169-212)||(46694334-46694377)
chr3 (48-78)||(38805395-38805425)
chr3 (48-77)||(19911693-19911722)
chr3 (180-212)||(3383086-3383118)
chr3 (180-212)||(13364853-13364885)
chr3 (180-212)||(19241903-19241935)
chr3 (180-212)||(27707399-27707431)
[»] chr4 (14 HSPs)
chr4 (52-207)||(19361662-19361817)
chr4 (52-207)||(20541476-20541635)
chr4 (169-212)||(20249236-20249279)
chr4 (180-212)||(12071571-12071603)
chr4 (180-212)||(14261054-14261086)
chr4 (180-212)||(21310435-21310467)
chr4 (180-212)||(22321502-22321534)
chr4 (180-212)||(24706482-24706514)
chr4 (180-212)||(25704661-25704693)
chr4 (180-212)||(34324818-34324850)
chr4 (180-212)||(40122720-40122752)
chr4 (180-211)||(21661770-21661801)
chr4 (180-211)||(21670534-21670565)
chr4 (180-212)||(44568847-44568879)
[»] scaffold1431 (1 HSPs)
scaffold1431 (180-212)||(134-166)
[»] scaffold0054 (1 HSPs)
scaffold0054 (180-212)||(45464-45496)


Alignment Details
Target: scaffold0257 (Bit Score: 173; Significance: 3e-93; HSPs: 1)
Name: scaffold0257
Description:

Target: scaffold0257; HSP #1
Raw Score: 173; E-Value: 3e-93
Query Start/End: Original strand, 16 - 212
Target Start/End: Complemental strand, 23673 - 23477
Alignment:
Q  16 atcgtaactaactactcctaattattttcccatgaatttaattaattttggtattggtattgggagtaattatgagatggggtaaataaatgtaaaatgg 115  Q
    |||||||||||| ||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  23673 atcgtaactaaccactcctaattattttcctatgaatttaattaattttggtattggtattgggagtaattatgagatggggtaaataaatgtaaaatgg 23574  T
Q  116 aggaaatcaaagacaatggtataataggaacttttgtgtcaaactagcttgtccttgattaatacaatttctccaaaatggacatgtattttgaaac 212  Q
    |||||||||||||||| |||||||||||||||||||||||||||||||||||||||| ||| | |||||||||||||||||||||||||||||||||    
T  23573 aggaaatcaaagacaagggtataataggaacttttgtgtcaaactagcttgtccttggttactgcaatttctccaaaatggacatgtattttgaaac 23477  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 169; Significance: 8e-91; HSPs: 11)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 169; E-Value: 8e-91
Query Start/End: Original strand, 16 - 212
Target Start/End: Original strand, 19996562 - 19996758
Alignment:
Q  16 atcgtaactaactactcctaattattttcccatgaatttaattaattttggtattggtattgggagtaattatgagatggggtaaataaatgtaaaatgg 115  Q
    |||||||||||| ||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  19996562 atcgtaactaaccactcctaattattttcctatgaatttaattaattttggtattggtattgggagtaattatgagatggggtaaataaatgtaaaatgg 19996661  T
Q  116 aggaaatcaaagacaatggtataataggaacttttgtgtcaaactagcttgtccttgattaatacaatttctccaaaatggacatgtattttgaaac 212  Q
    |||||||||||||||| |||||||||||||||||||||||||||||||||||||||| ||| | ||||||||||||||| |||||||||||||||||    
T  19996662 aggaaatcaaagacaaaggtataataggaacttttgtgtcaaactagcttgtccttggttactgcaatttctccaaaatagacatgtattttgaaac 19996758  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 180 - 212
Target Start/End: Complemental strand, 1605621 - 1605589
Alignment:
Q  180 caatttctccaaaatggacatgtattttgaaac 212  Q
    |||||||||||||||||||||||||||||||||    
T  1605621 caatttctccaaaatggacatgtattttgaaac 1605589  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 180 - 212
Target Start/End: Complemental strand, 7761343 - 7761311
Alignment:
Q  180 caatttctccaaaatggacatgtattttgaaac 212  Q
    |||||||||||||||||||||||||||||||||    
T  7761343 caatttctccaaaatggacatgtattttgaaac 7761311  T

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Target: chr6; HSP #4
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 180 - 212
Target Start/End: Complemental strand, 29260234 - 29260202
Alignment:
Q  180 caatttctccaaaatggacatgtattttgaaac 212  Q
    |||||||||||||||||||||||||||||||||    
T  29260234 caatttctccaaaatggacatgtattttgaaac 29260202  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 180 - 212
Target Start/End: Original strand, 30734718 - 30734750
Alignment:
Q  180 caatttctccaaaatggacatgtattttgaaac 212  Q
    |||||||||||||||||||||||||||||||||    
T  30734718 caatttctccaaaatggacatgtattttgaaac 30734750  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 169 - 212
Target Start/End: Complemental strand, 8626535 - 8626492
Alignment:
Q  169 cttgattaatacaatttctccaaaatggacatgtattttgaaac 212  Q
    |||| ||||| |||||||| ||||||||||||||||||||||||    
T  8626535 cttggttaatgcaatttcttcaaaatggacatgtattttgaaac 8626492  T

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Target: chr6; HSP #7
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 181 - 212
Target Start/End: Complemental strand, 13757249 - 13757218
Alignment:
Q  181 aatttctccaaaatggacatgtattttgaaac 212  Q
    ||||||||||||||||||||||||||||||||    
T  13757249 aatttctccaaaatggacatgtattttgaaac 13757218  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 174 - 207
Target Start/End: Original strand, 31559965 - 31559998
Alignment:
Q  174 ttaatacaatttctccaaaatggacatgtatttt 207  Q
    ||||| ||||||||||||||||||||||||||||    
T  31559965 ttaatgcaatttctccaaaatggacatgtatttt 31559998  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 180 - 212
Target Start/End: Original strand, 15064929 - 15064961
Alignment:
Q  180 caatttctccaaaatggacatgtattttgaaac 212  Q
    ||||||||| |||||||||||||||||||||||    
T  15064929 caatttctctaaaatggacatgtattttgaaac 15064961  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 180 - 212
Target Start/End: Complemental strand, 17942485 - 17942453
Alignment:
Q  180 caatttctccaaaatggacatgtattttgaaac 212  Q
    ||||||||| |||||||||||||||||||||||    
T  17942485 caatttctcaaaaatggacatgtattttgaaac 17942453  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 180 - 212
Target Start/End: Original strand, 30734843 - 30734875
Alignment:
Q  180 caatttctccaaaatggacatgtattttgaaac 212  Q
    |||||||| ||||||||||||||||||||||||    
T  30734843 caatttcttcaaaatggacatgtattttgaaac 30734875  T

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Target: chr5 (Bit Score: 151; Significance: 4e-80; HSPs: 7)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 151; E-Value: 4e-80
Query Start/End: Original strand, 16 - 212
Target Start/End: Original strand, 15305062 - 15305255
Alignment:
Q  16 atcgtaactaactactcctaattattttcccatgaatttaattaattttggtattggtattgggagtaattatgagatggggtaaataaatgtaaaatgg 115  Q
    |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  15305062 atcgtaactaactactccaaattattttcccatgaatttaattaattttggtattggtattgggagtaattatgagatggggtaaataaatgtaaaatgg 15305161  T
Q  116 aggaaatcaaagacaatggtataataggaacttttgtgtcaaactagcttgtccttgattaatacaatttctccaaaatggacatgtattttgaaac 212  Q
    | |||||||||||||| |||||||||||||||||||||||||||| |||||||     ||| | |||||||||||||||||||||||||||||||||    
T  15305162 atgaaatcaaagacaagggtataataggaacttttgtgtcaaacttgcttgtc---agttactgcaatttctccaaaatggacatgtattttgaaac 15305255  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 169 - 212
Target Start/End: Original strand, 12807077 - 12807120
Alignment:
Q  169 cttgattaatacaatttctccaaaatggacatgtattttgaaac 212  Q
    |||| ||||| |||||||||||||||||||||||||||||||||    
T  12807077 cttggttaatgcaatttctccaaaatggacatgtattttgaaac 12807120  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 180 - 212
Target Start/End: Complemental strand, 16983300 - 16983268
Alignment:
Q  180 caatttctccaaaatggacatgtattttgaaac 212  Q
    |||||||||||||||||||||||||||||||||    
T  16983300 caatttctccaaaatggacatgtattttgaaac 16983268  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 180 - 212
Target Start/End: Complemental strand, 25773691 - 25773659
Alignment:
Q  180 caatttctccaaaatggacatgtattttgaaac 212  Q
    |||||||||||||||||||||||||||||||||    
T  25773691 caatttctccaaaatggacatgtattttgaaac 25773659  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 180 - 212
Target Start/End: Original strand, 30720727 - 30720759
Alignment:
Q  180 caatttctccaaaatggacatgtattttgaaac 212  Q
    |||||||||||||||||||||||||||||||||    
T  30720727 caatttctccaaaatggacatgtattttgaaac 30720759  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 52 - 90
Target Start/End: Complemental strand, 31485658 - 31485620
Alignment:
Q  52 tttaattaattttggtattggtattgggagtaattatga 90  Q
    ||||||||||||||||||||||||| | |||||||||||    
T  31485658 tttaattaattttggtattggtattcgaagtaattatga 31485620  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 180 - 212
Target Start/End: Original strand, 40886845 - 40886877
Alignment:
Q  180 caatttctccaaaatggacatgtattttgaaac 212  Q
    |||||||||||||||| ||||||||||||||||    
T  40886845 caatttctccaaaatgaacatgtattttgaaac 40886877  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 149; Significance: 7e-79; HSPs: 7)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 149; E-Value: 7e-79
Query Start/End: Original strand, 48 - 212
Target Start/End: Original strand, 34224257 - 34224421
Alignment:
Q  48 tgaatttaattaattttggtattggtattgggagtaattatgagatggggtaaataaatgtaaaatggaggaaatcaaagacaatggtataataggaact 147  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||    
T  34224257 tgaatttaattaattttggtattggtattgggagtaattatgagatggggtaaataaatgtaaaatggaggaaatcaaagacaagggtataataggaact 34224356  T
Q  148 tttgtgtcaaactagcttgtccttgattaatacaatttctccaaaatggacatgtattttgaaac 212  Q
    ||||||||||||||||||||||||| ||| | |||||||||||||||||||||||||||||||||    
T  34224357 tttgtgtcaaactagcttgtccttggttactgcaatttctccaaaatggacatgtattttgaaac 34224421  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 180 - 212
Target Start/End: Complemental strand, 1102545 - 1102513
Alignment:
Q  180 caatttctccaaaatggacatgtattttgaaac 212  Q
    |||||||||||||||||||||||||||||||||    
T  1102545 caatttctccaaaatggacatgtattttgaaac 1102513  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 180 - 212
Target Start/End: Complemental strand, 3518950 - 3518918
Alignment:
Q  180 caatttctccaaaatggacatgtattttgaaac 212  Q
    |||||||||||||||||||||||||||||||||    
T  3518950 caatttctccaaaatggacatgtattttgaaac 3518918  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 180 - 212
Target Start/End: Original strand, 12969974 - 12970006
Alignment:
Q  180 caatttctccaaaatggacatgtattttgaaac 212  Q
    |||||||||||||||||||||||||||||||||    
T  12969974 caatttctccaaaatggacatgtattttgaaac 12970006  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 180 - 212
Target Start/End: Complemental strand, 23366831 - 23366799
Alignment:
Q  180 caatttctccaaaatggacatgtattttgaaac 212  Q
    |||||||||||||||||||||||||||||||||    
T  23366831 caatttctccaaaatggacatgtattttgaaac 23366799  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 180 - 212
Target Start/End: Original strand, 37673972 - 37674004
Alignment:
Q  180 caatttctccaaaatggacatgtattttgaaac 212  Q
    |||||||||||||||| ||||||||||||||||    
T  37673972 caatttctccaaaatgaacatgtattttgaaac 37674004  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 180 - 212
Target Start/End: Complemental strand, 39938212 - 39938180
Alignment:
Q  180 caatttctccaaaatggacatgtattttgaaac 212  Q
    ||||||||||||||||| |||||||||||||||    
T  39938212 caatttctccaaaatggtcatgtattttgaaac 39938180  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 149; Significance: 7e-79; HSPs: 16)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 149; E-Value: 7e-79
Query Start/End: Original strand, 48 - 212
Target Start/End: Original strand, 13984870 - 13985034
Alignment:
Q  48 tgaatttaattaattttggtattggtattgggagtaattatgagatggggtaaataaatgtaaaatggaggaaatcaaagacaatggtataataggaact 147  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||    
T  13984870 tgaatttaattaattttggtattggtattgggagtaattatgagatggggtaaataaatgtaaaatggaggaaatcaaagacaagggtataataggaact 13984969  T
Q  148 tttgtgtcaaactagcttgtccttgattaatacaatttctccaaaatggacatgtattttgaaac 212  Q
    ||||||||||||||||||||||||| ||| | |||||||||||||||||||||||||||||||||    
T  13984970 tttgtgtcaaactagcttgtccttggttactgcaatttctccaaaatggacatgtattttgaaac 13985034  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 145; E-Value: 2e-76
Query Start/End: Original strand, 48 - 212
Target Start/End: Complemental strand, 3943234 - 3943070
Alignment:
Q  48 tgaatttaattaattttggtattggtattgggagtaattatgagatggggtaaataaatgtaaaatggaggaaatcaaagacaatggtataataggaact 147  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||    
T  3943234 tgaatttaattaattttggtattggtattgggagtaattatgagatggggtaaataaatgtaaaatggaggaaatcaaagacaagggtataataggaact 3943135  T
Q  148 tttgtgtcaaactagcttgtccttgattaatacaatttctccaaaatggacatgtattttgaaac 212  Q
    ||||||||||| ||||||||||||| ||| | |||||||||||||||||||||||||||||||||    
T  3943134 tttgtgtcaaattagcttgtccttggttactgcaatttctccaaaatggacatgtattttgaaac 3943070  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 145; E-Value: 2e-76
Query Start/End: Original strand, 48 - 212
Target Start/End: Complemental strand, 41959252 - 41959088
Alignment:
Q  48 tgaatttaattaattttggtattggtattgggagtaattatgagatggggtaaataaatgtaaaatggaggaaatcaaagacaatggtataataggaact 147  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |||||    
T  41959252 tgaatttaattaattttggtattggtattgggagtaattatgagatggggtaaataaatgtaaaatggaggaaatcaaagacaagggtataatatgaact 41959153  T
Q  148 tttgtgtcaaactagcttgtccttgattaatacaatttctccaaaatggacatgtattttgaaac 212  Q
    ||||||||||||||||||||||||| ||| | |||||||||||||||||||||||||||||||||    
T  41959152 tttgtgtcaaactagcttgtccttggttattgcaatttctccaaaatggacatgtattttgaaac 41959088  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 137; E-Value: 1e-71
Query Start/End: Original strand, 48 - 212
Target Start/End: Complemental strand, 9588844 - 9588680
Alignment:
Q  48 tgaatttaattaattttggtattggtattgggagtaattatgagatggggtaaataaatgtaaaatggaggaaatcaaagacaatggtataataggaact 147  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |||||||||||||||    
T  9588844 tgaatttaattaattttggtattggtattgggagtaattatgagatggggtaaataaatgtaaaatggagaaaatcaaagacaagggtataataggaact 9588745  T
Q  148 tttgtgtcaaactagcttgtccttgattaatacaatttctccaaaatggacatgtattttgaaac 212  Q
    ||||||||||| ||| ||||||||| ||| | |||||||||||||||||||||||||||||||||    
T  9588744 tttgtgtcaaaatagattgtccttggttactgcaatttctccaaaatggacatgtattttgaaac 9588680  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 96; E-Value: 3e-47
Query Start/End: Original strand, 52 - 211
Target Start/End: Original strand, 44228112 - 44228270
Alignment:
Q  52 tttaattaattttggtattggtattgggagtaattatgagatggggtaaataaatgtaaaatggaggaaatcaaagacaatggtataataggaacttttg 151  Q
    ||||||||| ||||||||||||||||| ||| ||||| ||||||||||||||||||||||||| ||||||| ||| |||| ||||||||||||||||||     
T  44228112 tttaattaaatttggtattggtattggaagtgattattagatggggtaaataaatgtaaaatgaaggaaataaaaaacaagggtataataggaactttta 44228211  T
Q  152 tgtcaaactagcttgtccttgattaatacaatttctccaaaatggacatgtattttgaaa 211  Q
    |||| | |||||||||||||| |||   ||||||||||||||||||||||||||||||||    
T  44228212 tgtc-agctagcttgtccttggttacagcaatttctccaaaatggacatgtattttgaaa 44228270  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 72; E-Value: 6e-33
Query Start/End: Original strand, 82 - 212
Target Start/End: Complemental strand, 1168499 - 1168371
Alignment:
Q  82 taattatgagatggggtaaataaatgtaaaatggaggaaatcaaagacaatggtataataggaacttttgtgtcaaactagcttgtccttgattaataca 181  Q
    ||||||||||| |||||||||||||  ||||||||||||||||||||||| |||| | || |||||||||||||||| ||||||||||||| ||| | ||    
T  1168499 taattatgagacggggtaaataaat--aaaatggaggaaatcaaagacaagggtaaactatgaacttttgtgtcaaaatagcttgtccttggttactgca 1168402  T
Q  182 atttctccaaaatggacatgtattttgaaac 212  Q
    |||||| |||||  |||||||||||||||||    
T  1168401 atttcttcaaaaacgacatgtattttgaaac 1168371  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 35; E-Value: 0.00000000007
Query Start/End: Original strand, 178 - 212
Target Start/End: Original strand, 47038083 - 47038117
Alignment:
Q  178 tacaatttctccaaaatggacatgtattttgaaac 212  Q
    |||||||||||||||||||||||||||||||||||    
T  47038083 tacaatttctccaaaatggacatgtattttgaaac 47038117  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 180 - 212
Target Start/End: Complemental strand, 284375 - 284343
Alignment:
Q  180 caatttctccaaaatggacatgtattttgaaac 212  Q
    |||||||||||||||||||||||||||||||||    
T  284375 caatttctccaaaatggacatgtattttgaaac 284343  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 180 - 212
Target Start/End: Original strand, 23045514 - 23045546
Alignment:
Q  180 caatttctccaaaatggacatgtattttgaaac 212  Q
    |||||||||||||||||||||||||||||||||    
T  23045514 caatttctccaaaatggacatgtattttgaaac 23045546  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 180 - 212
Target Start/End: Original strand, 27211199 - 27211231
Alignment:
Q  180 caatttctccaaaatggacatgtattttgaaac 212  Q
    |||||||||||||||||||||||||||||||||    
T  27211199 caatttctccaaaatggacatgtattttgaaac 27211231  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 180 - 212
Target Start/End: Complemental strand, 46771679 - 46771647
Alignment:
Q  180 caatttctccaaaatggacatgtattttgaaac 212  Q
    |||||||||||||||||||||||||||||||||    
T  46771679 caatttctccaaaatggacatgtattttgaaac 46771647  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 181 - 212
Target Start/End: Complemental strand, 44227889 - 44227858
Alignment:
Q  181 aatttctccaaaatggacatgtattttgaaac 212  Q
    ||||||||||||||||||||||||||||||||    
T  44227889 aatttctccaaaatggacatgtattttgaaac 44227858  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 169 - 211
Target Start/End: Complemental strand, 23526293 - 23526251
Alignment:
Q  169 cttgattaatacaatttctccaaaatggacatgtattttgaaa 211  Q
    |||||||| | |||||||||||||||| |||||||||||||||    
T  23526293 cttgattactgcaatttctccaaaatgaacatgtattttgaaa 23526251  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 180 - 212
Target Start/End: Complemental strand, 321668 - 321636
Alignment:
Q  180 caatttctccaaaatggacatgtattttgaaac 212  Q
    |||||||||||||||| ||||||||||||||||    
T  321668 caatttctccaaaatgaacatgtattttgaaac 321636  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 180 - 212
Target Start/End: Original strand, 24772140 - 24772172
Alignment:
Q  180 caatttctccaaaatggacatgtattttgaaac 212  Q
    |||||||| ||||||||||||||||||||||||    
T  24772140 caatttcttcaaaatggacatgtattttgaaac 24772172  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 180 - 212
Target Start/End: Original strand, 40783892 - 40783924
Alignment:
Q  180 caatttctccaaaatggacatgtattttgaaac 212  Q
    |||||||||||||||| ||||||||||||||||    
T  40783892 caatttctccaaaatgaacatgtattttgaaac 40783924  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 147; Significance: 1e-77; HSPs: 17)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 147; E-Value: 1e-77
Query Start/End: Original strand, 50 - 212
Target Start/End: Complemental strand, 10646764 - 10646602
Alignment:
Q  50 aatttaattaattttggtattggtattgggagtaattatgagatggggtaaataaatgtaaaatggaggaaatcaaagacaatggtataataggaacttt 149  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||    
T  10646764 aatttaattaattttggtattggtattgggagtaattatgagatggggtaaataaatgtaaaatggaggaaatcaaagacaagggtataataggaacttt 10646665  T
Q  150 tgtgtcaaactagcttgtccttgattaatacaatttctccaaaatggacatgtattttgaaac 212  Q
    ||||||||||||||||||||||| ||| | |||||||||||||||||||||||||||||||||    
T  10646664 tgtgtcaaactagcttgtccttggttactgcaatttctccaaaatggacatgtattttgaaac 10646602  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 145; E-Value: 2e-76
Query Start/End: Original strand, 48 - 212
Target Start/End: Original strand, 8697777 - 8697941
Alignment:
Q  48 tgaatttaattaattttggtattggtattgggagtaattatgagatggggtaaataaatgtaaaatggaggaaatcaaagacaatggtataataggaact 147  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||    
T  8697777 tgaatttaattaattttggtattggtattgggagtaattatgagatggggtaaataaatgtaaaatggaggaaatcaaagacaagggtataataggaact 8697876  T
Q  148 tttgtgtcaaactagcttgtccttgattaatacaatttctccaaaatggacatgtattttgaaac 212  Q
    ||||||||||||||| ||||||||| ||| | |||||||||||||||||||||||||||||||||    
T  8697877 tttgtgtcaaactagtttgtccttggttactgcaatttctccaaaatggacatgtattttgaaac 8697941  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 145; E-Value: 2e-76
Query Start/End: Original strand, 48 - 212
Target Start/End: Original strand, 41307840 - 41308004
Alignment:
Q  48 tgaatttaattaattttggtattggtattgggagtaattatgagatggggtaaataaatgtaaaatggaggaaatcaaagacaatggtataataggaact 147  Q
    |||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||    
T  41307840 tgaatttaattaattttgatattggtattgggagtaattatgagatggggtaaataaatgtaaaatggaggaaatcaaagacaagggtataataggaact 41307939  T
Q  148 tttgtgtcaaactagcttgtccttgattaatacaatttctccaaaatggacatgtattttgaaac 212  Q
    ||||||||||||||||||||||||| ||| | |||||||||||||||||||||||||||||||||    
T  41307940 tttgtgtcaaactagcttgtccttggttactgcaatttctccaaaatggacatgtattttgaaac 41308004  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 145; E-Value: 2e-76
Query Start/End: Original strand, 48 - 212
Target Start/End: Original strand, 45278580 - 45278744
Alignment:
Q  48 tgaatttaattaattttggtattggtattgggagtaattatgagatggggtaaataaatgtaaaatggaggaaatcaaagacaatggtataataggaact 147  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||    
T  45278580 tgaatttaattaattttggtattggtattgggagtaattatgagatggggtaaataaatgtaaaatggaggaaatcaaagacaagggtataataggaact 45278679  T
Q  148 tttgtgtcaaactagcttgtccttgattaatacaatttctccaaaatggacatgtattttgaaac 212  Q
    ||||||||||| ||||||||||||| ||| | |||||||||||||||||||||||||||||||||    
T  45278680 tttgtgtcaaattagcttgtccttggttactgcaatttctccaaaatggacatgtattttgaaac 45278744  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 141; E-Value: 4e-74
Query Start/End: Original strand, 48 - 212
Target Start/End: Original strand, 40486332 - 40486496
Alignment:
Q  48 tgaatttaattaattttggtattggtattgggagtaattatgagatggggtaaataaatgtaaaatggaggaaatcaaagacaatggtataataggaact 147  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||    
T  40486332 tgaatttaattaattttggtattggtattgggagtaattatgagatggggtaaataaatgtaaaatggaggaaatcaaagacaagggtataataggaact 40486431  T
Q  148 tttgtgtcaaactagcttgtccttgattaatacaatttctccaaaatggacatgtattttgaaac 212  Q
    ||||||||||| ||||||||||||| ||| | |||||||| ||||||||||||||||||||||||    
T  40486432 tttgtgtcaaattagcttgtccttggttactgcaatttcttcaaaatggacatgtattttgaaac 40486496  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 180 - 212
Target Start/End: Original strand, 2540166 - 2540198
Alignment:
Q  180 caatttctccaaaatggacatgtattttgaaac 212  Q
    |||||||||||||||||||||||||||||||||    
T  2540166 caatttctccaaaatggacatgtattttgaaac 2540198  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 180 - 212
Target Start/End: Complemental strand, 3585493 - 3585461
Alignment:
Q  180 caatttctccaaaatggacatgtattttgaaac 212  Q
    |||||||||||||||||||||||||||||||||    
T  3585493 caatttctccaaaatggacatgtattttgaaac 3585461  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 180 - 212
Target Start/End: Original strand, 11646560 - 11646592
Alignment:
Q  180 caatttctccaaaatggacatgtattttgaaac 212  Q
    |||||||||||||||||||||||||||||||||    
T  11646560 caatttctccaaaatggacatgtattttgaaac 11646592  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 180 - 212
Target Start/End: Complemental strand, 27035039 - 27035007
Alignment:
Q  180 caatttctccaaaatggacatgtattttgaaac 212  Q
    |||||||||||||||||||||||||||||||||    
T  27035039 caatttctccaaaatggacatgtattttgaaac 27035007  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 180 - 212
Target Start/End: Original strand, 40918964 - 40918996
Alignment:
Q  180 caatttctccaaaatggacatgtattttgaaac 212  Q
    |||||||||||||||||||||||||||||||||    
T  40918964 caatttctccaaaatggacatgtattttgaaac 40918996  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 180 - 212
Target Start/End: Original strand, 43275632 - 43275664
Alignment:
Q  180 caatttctccaaaatggacatgtattttgaaac 212  Q
    |||||||||||||||||||||||||||||||||    
T  43275632 caatttctccaaaatggacatgtattttgaaac 43275664  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 178 - 212
Target Start/End: Complemental strand, 36068124 - 36068090
Alignment:
Q  178 tacaatttctccaaaatggacatgtattttgaaac 212  Q
    ||||||| |||||||||||||||||||||||||||    
T  36068124 tacaattcctccaaaatggacatgtattttgaaac 36068090  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 180 - 212
Target Start/End: Complemental strand, 7146955 - 7146923
Alignment:
Q  180 caatttctccaaaatggacatgtattttgaaac 212  Q
    |||||||| ||||||||||||||||||||||||    
T  7146955 caatttcttcaaaatggacatgtattttgaaac 7146923  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 180 - 212
Target Start/End: Original strand, 11174458 - 11174490
Alignment:
Q  180 caatttctccaaaatggacatgtattttgaaac 212  Q
    |||||||||||||||| ||||||||||||||||    
T  11174458 caatttctccaaaatgaacatgtattttgaaac 11174490  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 180 - 212
Target Start/End: Original strand, 30999756 - 30999788
Alignment:
Q  180 caatttctccaaaatggacatgtattttgaaac 212  Q
    ||||||||||||||| |||||||||||||||||    
T  30999756 caatttctccaaaattgacatgtattttgaaac 30999788  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 180 - 212
Target Start/End: Complemental strand, 37345613 - 37345581
Alignment:
Q  180 caatttctccaaaatggacatgtattttgaaac 212  Q
    |||||||| ||||||||||||||||||||||||    
T  37345613 caatttcttcaaaatggacatgtattttgaaac 37345581  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 180 - 212
Target Start/End: Original strand, 40058538 - 40058570
Alignment:
Q  180 caatttctccaaaatggacatgtattttgaaac 212  Q
    |||||||||| ||||||||||||||||||||||    
T  40058538 caatttctccgaaatggacatgtattttgaaac 40058570  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 145; Significance: 2e-76; HSPs: 8)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 145; E-Value: 2e-76
Query Start/End: Original strand, 48 - 212
Target Start/End: Original strand, 25060012 - 25060176
Alignment:
Q  48 tgaatttaattaattttggtattggtattgggagtaattatgagatggggtaaataaatgtaaaatggaggaaatcaaagacaatggtataataggaact 147  Q
    |||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||    
T  25060012 tgaatttaattaattttggtattggtattgagagtaattatgagatggggtaaataaatgtaaaatggaggaaatcaaagacaagggtataataggaact 25060111  T
Q  148 tttgtgtcaaactagcttgtccttgattaatacaatttctccaaaatggacatgtattttgaaac 212  Q
    ||||||||||||||||||||||||| ||| | |||||||||||||||||||||||||||||||||    
T  25060112 tttgtgtcaaactagcttgtccttggttactgcaatttctccaaaatggacatgtattttgaaac 25060176  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 144; E-Value: 7e-76
Query Start/End: Original strand, 48 - 211
Target Start/End: Original strand, 2911427 - 2911590
Alignment:
Q  48 tgaatttaattaattttggtattggtattgggagtaattatgagatggggtaaataaatgtaaaatggaggaaatcaaagacaatggtataataggaact 147  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||    
T  2911427 tgaatttaattaattttggtattggtattgggagtaattatgagatggggtaaataaatgtaaaatggaggaaatcaaagacaagggtataataggaact 2911526  T
Q  148 tttgtgtcaaactagcttgtccttgattaatacaatttctccaaaatggacatgtattttgaaa 211  Q
    ||||||||||| ||||||||||||| ||| | ||||||||||||||||||||||||||||||||    
T  2911527 tttgtgtcaaattagcttgtccttggttactgcaatttctccaaaatggacatgtattttgaaa 2911590  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 180 - 212
Target Start/End: Complemental strand, 10981550 - 10981518
Alignment:
Q  180 caatttctccaaaatggacatgtattttgaaac 212  Q
    |||||||||||||||||||||||||||||||||    
T  10981550 caatttctccaaaatggacatgtattttgaaac 10981518  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 180 - 212
Target Start/End: Original strand, 25614586 - 25614618
Alignment:
Q  180 caatttctccaaaatggacatgtattttgaaac 212  Q
    |||||||||||||||||||||||||||||||||    
T  25614586 caatttctccaaaatggacatgtattttgaaac 25614618  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 180 - 212
Target Start/End: Complemental strand, 27813853 - 27813821
Alignment:
Q  180 caatttctccaaaatggacatgtattttgaaac 212  Q
    |||||||||||||||||||||||||||||||||    
T  27813853 caatttctccaaaatggacatgtattttgaaac 27813821  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 180 - 212
Target Start/End: Original strand, 36453359 - 36453391
Alignment:
Q  180 caatttctccaaaatggacatgtattttgaaac 212  Q
    |||||||||||||||||||||||||||||||||    
T  36453359 caatttctccaaaatggacatgtattttgaaac 36453391  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 180 - 212
Target Start/End: Complemental strand, 40349002 - 40348970
Alignment:
Q  180 caatttctccaaaatggacatgtattttgaaac 212  Q
    |||||||||||||||||||||||||||||||||    
T  40349002 caatttctccaaaatggacatgtattttgaaac 40348970  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 180 - 211
Target Start/End: Complemental strand, 47110493 - 47110462
Alignment:
Q  180 caatttctccaaaatggacatgtattttgaaa 211  Q
    ||||||||||||||||||||||||||||||||    
T  47110493 caatttctccaaaatggacatgtattttgaaa 47110462  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 145; Significance: 2e-76; HSPs: 19)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 145; E-Value: 2e-76
Query Start/End: Original strand, 48 - 212
Target Start/End: Complemental strand, 12094756 - 12094592
Alignment:
Q  48 tgaatttaattaattttggtattggtattgggagtaattatgagatggggtaaataaatgtaaaatggaggaaatcaaagacaatggtataataggaact 147  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |||||||||||||||    
T  12094756 tgaatttaattaattttggtattggtattgggagtaattatgagatggggtaaataaatgtaaaatagaggaaatcaaagacaagggtataataggaact 12094657  T
Q  148 tttgtgtcaaactagcttgtccttgattaatacaatttctccaaaatggacatgtattttgaaac 212  Q
    ||||||||||||||||||||||||| ||| | |||||||||||||||||||||||||||||||||    
T  12094656 tttgtgtcaaactagcttgtccttggttactgcaatttctccaaaatggacatgtattttgaaac 12094592  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 141; E-Value: 4e-74
Query Start/End: Original strand, 48 - 212
Target Start/End: Original strand, 44277334 - 44277498
Alignment:
Q  48 tgaatttaattaattttggtattggtattgggagtaattatgagatggggtaaataaatgtaaaatggaggaaatcaaagacaatggtataataggaact 147  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |||||||||||||||    
T  44277334 tgaatttaattaattttggtattggtattgggagtaattatgagatggggtaaataaatgtaaaatggagaaaatcaaagacaagggtataataggaact 44277433  T
Q  148 tttgtgtcaaactagcttgtccttgattaatacaatttctccaaaatggacatgtattttgaaac 212  Q
    ||||||||||||||||||||||||| ||| | ||||||||||||||| |||||||||||||||||    
T  44277434 tttgtgtcaaactagcttgtccttggttactgcaatttctccaaaatagacatgtattttgaaac 44277498  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 137; E-Value: 1e-71
Query Start/End: Original strand, 48 - 212
Target Start/End: Complemental strand, 19911683 - 19911519
Alignment:
Q  48 tgaatttaattaattttggtattggtattgggagtaattatgagatggggtaaataaatgtaaaatggaggaaatcaaagacaatggtataataggaact 147  Q
    |||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |||||||||||||||    
T  19911683 tgaatttaattaattttggtattggtattgggagtaattatgaggtggggtaaataaatgtaaaatggaggaaatcaaagacaagggtataataggaact 19911584  T
Q  148 tttgtgtcaaactagcttgtccttgattaatacaatttctccaaaatggacatgtattttgaaac 212  Q
    |||||||||||||| |||||||||| ||| | |||||||||||||||| ||||||||||||||||    
T  19911583 tttgtgtcaaactaacttgtccttggttactgcaatttctccaaaatgaacatgtattttgaaac 19911519  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 126; E-Value: 4e-65
Query Start/End: Original strand, 63 - 212
Target Start/End: Complemental strand, 38805404 - 38805255
Alignment:
Q  63 ttggtattggtattgggagtaattatgagatggggtaaataaatgtaaaatggaggaaatcaaagacaatggtataataggaacttttgtgtcaaactag 162  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||    
T  38805404 ttggtattggtattgggagtaattatgagatggggtaaataaatgtaaaatggaggaaatcaaagacaagggtataataggaacttttgtgtcaaactag 38805305  T
Q  163 cttgtccttgattaatacaatttctccaaaatggacatgtattttgaaac 212  Q
    |||||||||| ||| | ||||||||| |||||||||||||||||| ||||    
T  38805304 cttgtccttggttactgcaatttctctaaaatggacatgtattttaaaac 38805255  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 97; E-Value: 7e-48
Query Start/End: Original strand, 52 - 212
Target Start/End: Complemental strand, 40931792 - 40931632
Alignment:
Q  52 tttaattaattttggtattggtattgggagtaattatgagatggggtaaataaatgtaaaatggaggaaatcaaagacaatggtataataggaacttttg 151  Q
    ||||||||||||||||||||||||||||||||| ||||||||||||||||||||  ||||||||||||||||||||||||  ||||||||||||||||||    
T  40931792 tttaattaattttggtattggtattgggagtaactatgagatggggtaaataaacataaaatggaggaaatcaaagacaagagtataataggaacttttg 40931693  T
Q  152 tgtcaaactagcttgtccttgattaatacaatttctccaaaatggacatgtattttgaaac 212  Q
    ||| || ||||||||| |||| |||||  ||||| |  ||||| |||||||||||| ||||    
T  40931692 tgttaatctagcttgtgcttggttaatgtaatttttttaaaatagacatgtattttaaaac 40931632  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 85; E-Value: 1e-40
Query Start/End: Original strand, 69 - 212
Target Start/End: Complemental strand, 4226856 - 4226717
Alignment:
Q  69 ttggtattgggagtaattatgagatggggtaaataaatgtaaaatggaggaaatcaaagacaatggtataataggaacttttgtgtcaaactagcttgtc 168  Q
    ||||||||| ||||||||||||||||||||||||||||  |||||||||||||||||| |||| |||||||||||||| ||||||||||||||| |||||    
T  4226856 ttggtattgagagtaattatgagatggggtaaataaat--aaaatggaggaaatcaaacacaagggtataataggaac-tttgtgtcaaactagtttgtc 4226760  T
Q  169 cttgattaatacaatttctccaaaatggacatgtattttgaaac 212  Q
    |||| ||| | ||||||||||||||  |||||||||||||||||    
T  4226759 cttggttactgcaatttctccaaaa-cgacatgtattttgaaac 4226717  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 81; E-Value: 3e-38
Query Start/End: Original strand, 69 - 212
Target Start/End: Complemental strand, 4235900 - 4235761
Alignment:
Q  69 ttggtattgggagtaattatgagatggggtaaataaatgtaaaatggaggaaatcaaagacaatggtataataggaacttttgtgtcaaactagcttgtc 168  Q
    ||||||||| ||||||||||||||| ||||||||||||  |||||||||||||||||| |||| |||||||||||||| ||||| |||||||||||||||    
T  4235900 ttggtattgagagtaattatgagattgggtaaataaat--aaaatggaggaaatcaaacacaagggtataataggaac-tttgtatcaaactagcttgtc 4235804  T
Q  169 cttgattaatacaatttctccaaaatggacatgtattttgaaac 212  Q
    |||| ||| | ||||||||||||||  |||||||||||||||||    
T  4235803 cttggttagtgcaatttctccaaaa-cgacatgtattttgaaac 4235761  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 180 - 212
Target Start/End: Complemental strand, 198897 - 198865
Alignment:
Q  180 caatttctccaaaatggacatgtattttgaaac 212  Q
    |||||||||||||||||||||||||||||||||    
T  198897 caatttctccaaaatggacatgtattttgaaac 198865  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 180 - 212
Target Start/End: Complemental strand, 29375180 - 29375148
Alignment:
Q  180 caatttctccaaaatggacatgtattttgaaac 212  Q
    |||||||||||||||||||||||||||||||||    
T  29375180 caatttctccaaaatggacatgtattttgaaac 29375148  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 180 - 212
Target Start/End: Original strand, 32835191 - 32835223
Alignment:
Q  180 caatttctccaaaatggacatgtattttgaaac 212  Q
    |||||||||||||||||||||||||||||||||    
T  32835191 caatttctccaaaatggacatgtattttgaaac 32835223  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 180 - 212
Target Start/End: Complemental strand, 36881324 - 36881292
Alignment:
Q  180 caatttctccaaaatggacatgtattttgaaac 212  Q
    |||||||||||||||||||||||||||||||||    
T  36881324 caatttctccaaaatggacatgtattttgaaac 36881292  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 180 - 212
Target Start/End: Complemental strand, 43750179 - 43750147
Alignment:
Q  180 caatttctccaaaatggacatgtattttgaaac 212  Q
    |||||||||||||||||||||||||||||||||    
T  43750179 caatttctccaaaatggacatgtattttgaaac 43750147  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 169 - 212
Target Start/End: Original strand, 46694334 - 46694377
Alignment:
Q  169 cttgattaatacaatttctccaaaatggacatgtattttgaaac 212  Q
    |||||||| | |||||||||||||| ||||||||||||||||||    
T  46694334 cttgattagtgcaatttctccaaaaaggacatgtattttgaaac 46694377  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 48 - 78
Target Start/End: Complemental strand, 38805425 - 38805395
Alignment:
Q  48 tgaatttaattaattttggtattggtattgg 78  Q
    |||||||||||||||||||||||||||||||    
T  38805425 tgaatttaattaattttggtattggtattgg 38805395  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 48 - 77
Target Start/End: Complemental strand, 19911722 - 19911693
Alignment:
Q  48 tgaatttaattaattttggtattggtattg 77  Q
    ||||||||||||||||||||||||||||||    
T  19911722 tgaatttaattaattttggtattggtattg 19911693  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 180 - 212
Target Start/End: Complemental strand, 3383118 - 3383086
Alignment:
Q  180 caatttctccaaaatggacatgtattttgaaac 212  Q
    ||||||||||||||||||||| |||||||||||    
T  3383118 caatttctccaaaatggacatatattttgaaac 3383086  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 180 - 212
Target Start/End: Complemental strand, 13364885 - 13364853
Alignment:
Q  180 caatttctccaaaatggacatgtattttgaaac 212  Q
    |||||||||||||||| ||||||||||||||||    
T  13364885 caatttctccaaaatgaacatgtattttgaaac 13364853  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 180 - 212
Target Start/End: Original strand, 19241903 - 19241935
Alignment:
Q  180 caatttctccaaaatggacatgtattttgaaac 212  Q
    ||||||| |||||||||||||||||||||||||    
T  19241903 caatttcaccaaaatggacatgtattttgaaac 19241935  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 180 - 212
Target Start/End: Original strand, 27707399 - 27707431
Alignment:
Q  180 caatttctccaaaatggacatgtattttgaaac 212  Q
    ||||||||||||||||||||||||||| |||||    
T  27707399 caatttctccaaaatggacatgtatttcgaaac 27707431  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 132; Significance: 1e-68; HSPs: 14)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 132; E-Value: 1e-68
Query Start/End: Original strand, 52 - 207
Target Start/End: Complemental strand, 19361817 - 19361662
Alignment:
Q  52 tttaattaattttggtattggtattgggagtaattatgagatggggtaaataaatgtaaaatggaggaaatcaaagacaatggtataataggaacttttg 151  Q
    ||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |||||||||||||||||||||||| |||||||||||||||||||    
T  19361817 tttaattaattttggtattggtattgggagtaattattagatggggtaaataaatataaaatggaggaaatcaaagacaagggtataataggaacttttg 19361718  T
Q  152 tgtcaaactagcttgtccttgattaatacaatttctccaaaatggacatgtatttt 207  Q
    ||||||||||||||||||||| ||| | ||||||||||||||||||||||||||||    
T  19361717 tgtcaaactagcttgtccttggttactgcaatttctccaaaatggacatgtatttt 19361662  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 79; E-Value: 4e-37
Query Start/End: Original strand, 52 - 207
Target Start/End: Complemental strand, 20541635 - 20541476
Alignment:
Q  52 tttaattaattttggtattggtattgggagtaattatgagatggggtaaataaatgtaaaatggaggaaatcaaagacaat----ggtataataggaact 147  Q
    |||||||| ||||| |||||||||  ||||||||||||||||| |||||||||||||||||  |||||||||||||||||     |||||||||||||||    
T  20541635 tttaattagttttgatattggtatcaggagtaattatgagatgaggtaaataaatgtaaaacagaggaaatcaaagacaagtaagggtataataggaact 20541536  T
Q  148 tttgtgtcaaactagcttgtccttgattaatacaatttctccaaaatggacatgtatttt 207  Q
    |||||||| |||||| ||||||||| ||||| |||||||||||| |   |||||||||||    
T  20541535 tttgtgtcgaactagtttgtccttggttaatgcaatttctccaatagcaacatgtatttt 20541476  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 169 - 212
Target Start/End: Original strand, 20249236 - 20249279
Alignment:
Q  169 cttgattaatacaatttctccaaaatggacatgtattttgaaac 212  Q
    |||| |||||||||||| ||||||||||||||||||||||||||    
T  20249236 cttggttaatacaatttatccaaaatggacatgtattttgaaac 20249279  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 180 - 212
Target Start/End: Complemental strand, 12071603 - 12071571
Alignment:
Q  180 caatttctccaaaatggacatgtattttgaaac 212  Q
    |||||||||||||||||||||||||||||||||    
T  12071603 caatttctccaaaatggacatgtattttgaaac 12071571  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 180 - 212
Target Start/End: Complemental strand, 14261086 - 14261054
Alignment:
Q  180 caatttctccaaaatggacatgtattttgaaac 212  Q
    |||||||||||||||||||||||||||||||||    
T  14261086 caatttctccaaaatggacatgtattttgaaac 14261054  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 180 - 212
Target Start/End: Complemental strand, 21310467 - 21310435
Alignment:
Q  180 caatttctccaaaatggacatgtattttgaaac 212  Q
    |||||||||||||||||||||||||||||||||    
T  21310467 caatttctccaaaatggacatgtattttgaaac 21310435  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 180 - 212
Target Start/End: Original strand, 22321502 - 22321534
Alignment:
Q  180 caatttctccaaaatggacatgtattttgaaac 212  Q
    |||||||||||||||||||||||||||||||||    
T  22321502 caatttctccaaaatggacatgtattttgaaac 22321534  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 180 - 212
Target Start/End: Original strand, 24706482 - 24706514
Alignment:
Q  180 caatttctccaaaatggacatgtattttgaaac 212  Q
    |||||||||||||||||||||||||||||||||    
T  24706482 caatttctccaaaatggacatgtattttgaaac 24706514  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 180 - 212
Target Start/End: Complemental strand, 25704693 - 25704661
Alignment:
Q  180 caatttctccaaaatggacatgtattttgaaac 212  Q
    |||||||||||||||||||||||||||||||||    
T  25704693 caatttctccaaaatggacatgtattttgaaac 25704661  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 180 - 212
Target Start/End: Original strand, 34324818 - 34324850
Alignment:
Q  180 caatttctccaaaatggacatgtattttgaaac 212  Q
    |||||||||||||||||||||||||||||||||    
T  34324818 caatttctccaaaatggacatgtattttgaaac 34324850  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 180 - 212
Target Start/End: Original strand, 40122720 - 40122752
Alignment:
Q  180 caatttctccaaaatggacatgtattttgaaac 212  Q
    |||||||||||||||||||||||||||||||||    
T  40122720 caatttctccaaaatggacatgtattttgaaac 40122752  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 180 - 211
Target Start/End: Original strand, 21661770 - 21661801
Alignment:
Q  180 caatttctccaaaatggacatgtattttgaaa 211  Q
    ||||||||||||||||||||||||||||||||    
T  21661770 caatttctccaaaatggacatgtattttgaaa 21661801  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 180 - 211
Target Start/End: Original strand, 21670534 - 21670565
Alignment:
Q  180 caatttctccaaaatggacatgtattttgaaa 211  Q
    ||||||||||||||||||||||||||||||||    
T  21670534 caatttctccaaaatggacatgtattttgaaa 21670565  T

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Target: chr4; HSP #14
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 180 - 212
Target Start/End: Complemental strand, 44568879 - 44568847
Alignment:
Q  180 caatttctccaaaatggacatgtattttgaaac 212  Q
    |||||||| ||||||||||||||||||||||||    
T  44568879 caatttcttcaaaatggacatgtattttgaaac 44568847  T

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Target: scaffold1431 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: scaffold1431
Description:

Target: scaffold1431; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 180 - 212
Target Start/End: Original strand, 134 - 166
Alignment:
Q  180 caatttctccaaaatggacatgtattttgaaac 212  Q
    |||||||||||||||||||||||||||||||||    
T  134 caatttctccaaaatggacatgtattttgaaac 166  T

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Target: scaffold0054 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: scaffold0054
Description:

Target: scaffold0054; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 180 - 212
Target Start/End: Complemental strand, 45496 - 45464
Alignment:
Q  180 caatttctccaaaatggacatgtattttgaaac 212  Q
    |||||||||||||||| ||||||||||||||||    
T  45496 caatttctccaaaatgaacatgtattttgaaac 45464  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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