View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF16676_high_5 (Length: 554)
Name: NF16676_high_5
Description: NF16676
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16676_high_5 |
 | |
|
Alignment Details
Target: chr7 (Bit Score: 236; Significance: 1e-130; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 236; E-Value: 1e-130
Query Start/End: Original strand, 13 - 334
Target Start/End: Complemental strand, 34770448 - 34770138
Alignment:
| Q |
13 |
atgggtcaaactaatatgaattgtcatgaaaatagggttttatgttgagagacacttgtatattattatagatagagtgaacaatataatagagaacaca |
112 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |
|
|
| T |
34770448 |
atgggtcaaactaatatgaattgtcatgaaaatagggttttatgttgagagacacttgtatattattatagatagagtaaacaatataatagagaacaca |
34770349 |
T |
|
| Q |
113 |
tcatccttagacatgtatttccaaggcaaaaaggaaagaatgtgattagatttgatcgttataatgatagactccagtgatttcaattctcctttttgag |
212 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||| | |||||||||||||||||||||||| ||||||||||||||||||||||||| |
|
|
| T |
34770348 |
tcatccttagacatgtatttccaaggcaaaaaggaaagaatgtgatttggtttgatcgttataatgatagactctagtgatttcaattctcctttttgag |
34770249 |
T |
|
| Q |
213 |
tgcttattttcaaaacgaatattaaatcatctttctatcatcttacatcttttatttaaaacaacaatgtctattattttgcatatttaggaagnnnnnn |
312 |
Q |
| |
|
|||||||||||||||| |||||||||||| |||||||||||||||||||||||||||| ||||||||||||||||||||||||| |
|
|
| T |
34770248 |
tgcttattttcaaaactaatattaaatca-----------tcttacatcttttatttaaaacaacaatatctattattttgcatatttaggaagaaaaaa |
34770160 |
T |
|
| Q |
313 |
nngtcaccttgatgattacaag |
334 |
Q |
| |
|
|||||||||||||||||||| |
|
|
| T |
34770159 |
aagtcaccttgatgattacaag |
34770138 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 37; Significance: 0.00000000001; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 219 - 275
Target Start/End: Original strand, 22676449 - 22676505
Alignment:
| Q |
219 |
ttttcaaaacgaatattaaatcatctttctatcatcttacatcttttatttaaaaca |
275 |
Q |
| |
|
|||||||||| ||||||||||| |||||| |||||||| ||||||||||| |||||| |
|
|
| T |
22676449 |
ttttcaaaacaaatattaaatcgtctttcaatcatcttgcatcttttattaaaaaca |
22676505 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 33; Significance: 0.000000003; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 318 - 370
Target Start/End: Complemental strand, 18609889 - 18609837
Alignment:
| Q |
318 |
accttgatgattacaagtccttgtgggatcaatattttattacaataataaaa |
370 |
Q |
| |
|
||||||||||| | |||||| |||||||||||||||||||||| | ||||||| |
|
|
| T |
18609889 |
accttgatgatcataagtccctgtgggatcaatattttattacgacaataaaa |
18609837 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University