View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF16676_high_6 (Length: 554)

Name: NF16676_high_6
Description: NF16676
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF16676_high_6
NF16676_high_6
[»] chr4 (9 HSPs)
chr4 (24-543)||(20093720-20094234)
chr4 (28-83)||(18525422-18525477)
chr4 (28-125)||(49576853-49576951)
chr4 (38-124)||(13015447-13015534)
chr4 (31-61)||(10588894-10588924)
chr4 (31-81)||(35345814-35345864)
chr4 (38-79)||(33112881-33112922)
chr4 (31-72)||(51948553-51948594)
chr4 (31-83)||(18469559-18469611)
[»] chr3 (5 HSPs)
chr3 (28-86)||(33278979-33279037)
chr3 (28-83)||(16173160-16173215)
chr3 (28-83)||(44069820-44069875)
chr3 (38-84)||(19307886-19307932)
chr3 (25-81)||(55166612-55166668)
[»] scaffold0006 (1 HSPs)
scaffold0006 (28-73)||(162968-163013)
[»] chr8 (6 HSPs)
chr8 (28-77)||(35672484-35672533)
chr8 (31-125)||(40591751-40591843)
chr8 (28-124)||(16843754-16843850)
chr8 (31-65)||(35826391-35826425)
chr8 (31-72)||(43292398-43292439)
chr8 (28-60)||(36205278-36205310)
[»] chr7 (9 HSPs)
chr7 (30-124)||(7721389-7721484)
chr7 (28-125)||(16708414-16708512)
chr7 (28-125)||(17682650-17682748)
chr7 (28-122)||(20335790-20335885)
chr7 (25-83)||(4572253-4572311)
chr7 (28-81)||(46572169-46572222)
chr7 (29-65)||(3280446-3280482)
chr7 (31-75)||(26526359-26526403)
chr7 (28-64)||(27454798-27454834)
[»] chr5 (5 HSPs)
chr5 (28-124)||(29075801-29075898)
chr5 (25-72)||(14424532-14424579)
chr5 (28-65)||(19949575-19949612)
chr5 (28-88)||(9187473-9187532)
chr5 (31-83)||(19087065-19087117)
[»] chr2 (5 HSPs)
chr2 (28-124)||(11251107-11251204)
chr2 (28-83)||(29197335-29197390)
chr2 (28-83)||(31573600-31573655)
chr2 (28-80)||(11127962-11128014)
chr2 (30-66)||(38632001-38632037)
[»] chr6 (2 HSPs)
chr6 (28-134)||(31622950-31623057)
chr6 (28-66)||(12852810-12852848)
[»] chr1 (3 HSPs)
chr1 (31-81)||(12725073-12725123)
chr1 (28-73)||(1094597-1094642)
chr1 (31-63)||(35282438-35282470)
[»] scaffold0115 (1 HSPs)
scaffold0115 (28-84)||(42623-42679)


Alignment Details
Target: chr4 (Bit Score: 410; Significance: 0; HSPs: 9)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 410; E-Value: 0
Query Start/End: Original strand, 24 - 543
Target Start/End: Complemental strand, 20094234 - 20093720
Alignment:
Q  24 gttgttgaagaagttaaattagtccatctaaattgacaccggaaagaatcaaacatgagattttgggaggagtacagtcccaagtccgaagcgaatacca 123  Q
    |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |||||||||    ||||||| | |||||||    
T  20094234 gttgttgaagaagttaaattagtccatctaaattgacaccgggaagaatcaaacatgagattttgggagaagtacagtc----gtccgaaaccaatacca 20094139  T
Q  124 ccggatcaaccaagtagattagaactgatatattatatatctcattttcatattattatgtaaatgttgcacccgatatctttatttgtgtaagttgcga 223  Q
    || |||||| ||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |    
T  20094138 ccagatcaatcaagtagattagaactgatatattatatatcccattttcatattattatgtaaatgttgcacccgatatctttatttgtgtaagttgcaa 20094039  T
Q  224 ccttatcacaannnnnnnagttccaattgcttttacatacttgcaaagtggagagcataactgcaaattaggtgcttgtaatctttgttattacactact 323  Q
    |||||||||||       ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  20094038 ccttatcacaatttttttagttccaattgcttttacatatttgcaaagtggagagcataactgcaaattaggtgcttgtaatctttgttattacactact 20093939  T
Q  324 tggcataagtgtgatataaataattcttacgtttaccataagcaaggttgaatgttgattcataatgaggaagctagaacatgccccacgagcaaagcaa 423  Q
    |||||||| |||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||    
T  20093938 tggcataattgtgatataaataattcttacgtttaccataagcaaggttcaatgttgattcataatgaggaagctagaacatgccccacgagcaaagcaa 20093839  T
Q  424 attaattaactttacggggtccatgatccaaacattatgccctcatacaatacaattgtactacaatctcatcaactagtgaaagtaacgatgcccctcc 523  Q
    ||||||||||||||| ||||||||||||||||||  |||||||||||||||||||||||||||| ||||||||||||||||||||||| |||| ||||||    
T  20093838 attaattaactttacagggtccatgatccaaacaacatgccctcatacaatacaattgtactac-atctcatcaactagtgaaagtaatgatgtccctcc 20093740  T
Q  524 ttgtgcgctggctgtttcat 543  Q
    ||||||||||||||||||||    
T  20093739 ttgtgcgctggctgtttcat 20093720  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 28 - 83
Target Start/End: Complemental strand, 18525477 - 18525422
Alignment:
Q  28 ttgaagaagttaaattagtccatctaaattgacaccggaaagaatcaaacatgaga 83  Q
    ||||||||||||||||||||||||||||||||||||||| |||||| |||||||||    
T  18525477 ttgaagaagttaaattagtccatctaaattgacaccggagagaatcgaacatgaga 18525422  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 28 - 125
Target Start/End: Original strand, 49576853 - 49576951
Alignment:
Q  28 ttgaagaagttaaattagtccatctaaattgacaccggaaagaatcaaacatgagattttg-ggaggagtacagtcccaagtccgaagcgaataccacc 125  Q
    ||||||||||||| |||||||| | |||||||||  ||| |||||| ||| |||||  ||| ||||||| ||| |||||||||| |||| |||||||||    
T  49576853 ttgaagaagttaagttagtccacccaaattgacattggagagaatcgaacctgagaccttgaggaggagcacactcccaagtccaaagccaataccacc 49576951  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 38 - 124
Target Start/End: Complemental strand, 13015534 - 13015447
Alignment:
Q  38 taaattagtccatctaaattgacaccggaaagaatcaaacatgagattttg-ggaggagtacagtcccaagtccgaagcgaataccac 124  Q
    |||||||  ||| ||||||||||||| || |||||| ||||||||| || | ||||||| ||| |||||||||| |||| ||||||||    
T  13015534 taaattaacccacctaaattgacacctgagagaatcgaacatgagacttcgaggaggagcacactcccaagtcccaagccaataccac 13015447  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 31 - 61
Target Start/End: Original strand, 10588894 - 10588924
Alignment:
Q  31 aagaagttaaattagtccatctaaattgaca 61  Q
    |||||||||||||||||||||||||||||||    
T  10588894 aagaagttaaattagtccatctaaattgaca 10588924  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 31 - 81
Target Start/End: Complemental strand, 35345864 - 35345814
Alignment:
Q  31 aagaagttaaattagtccatctaaattgacaccggaaagaatcaaacatga 81  Q
    |||||| |||||||||||||| ||||||||| |||| ||| ||||||||||    
T  35345864 aagaagataaattagtccatccaaattgacatcggagagagtcaaacatga 35345814  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 38 - 79
Target Start/End: Complemental strand, 33112922 - 33112881
Alignment:
Q  38 taaattagtccatctaaattgacaccggaaagaatcaaacat 79  Q
    ||||||||| |||||||||||||| ||||||||||| |||||    
T  33112922 taaattagttcatctaaattgacatcggaaagaatcgaacat 33112881  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 31 - 72
Target Start/End: Complemental strand, 51948594 - 51948553
Alignment:
Q  31 aagaagttaaattagtccatctaaattgacaccggaaagaat 72  Q
    |||||||||||||||||||| ||||||||||| ||| |||||    
T  51948594 aagaagttaaattagtccatttaaattgacactggagagaat 51948553  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 31 - 83
Target Start/End: Complemental strand, 18469611 - 18469559
Alignment:
Q  31 aagaagttaaattagtccatctaaattgacaccggaaagaatcaaacatgaga 83  Q
    |||||| ||||||||  || ||||||||| ||||||||||||| |||||||||    
T  18469611 aagaagataaattagctcacctaaattgataccggaaagaatccaacatgaga 18469559  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 39; Significance: 0.0000000000008; HSPs: 5)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 28 - 86
Target Start/End: Original strand, 33278979 - 33279037
Alignment:
Q  28 ttgaagaagttaaattagtccatctaaattgacaccggaaagaatcaaacatgagattt 86  Q
    ||||||||| |||||||  |||||||||||||||||||| |||||||||| ||||||||    
T  33278979 ttgaagaagctaaattatcccatctaaattgacaccggagagaatcaaacctgagattt 33279037  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 28 - 83
Target Start/End: Complemental strand, 16173215 - 16173160
Alignment:
Q  28 ttgaagaagttaaattagtccatctaaattgacaccggaaagaatcaaacatgaga 83  Q
    ||||||||| ||||||| || ||||||||||||| || |||||||| |||||||||    
T  16173215 ttgaagaagataaattaatcaatctaaattgacatcgtaaagaatcgaacatgaga 16173160  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 28 - 83
Target Start/End: Complemental strand, 44069875 - 44069820
Alignment:
Q  28 ttgaagaagttaaattagtccatctaaattgacaccggaaagaatcaaacatgaga 83  Q
    ||||||||| |||| ||| ||| |||||||| |||||||||||||||||| |||||    
T  44069875 ttgaagaagctaaactagcccacctaaattggcaccggaaagaatcaaacctgaga 44069820  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 38 - 84
Target Start/End: Original strand, 19307886 - 19307932
Alignment:
Q  38 taaattagtccatctaaattgacaccggaaagaatcaaacatgagat 84  Q
    |||||||||||| |||||||||||||||||| |||  ||||||||||    
T  19307886 taaattagtccacctaaattgacaccggaaaaaattgaacatgagat 19307932  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 25 - 81
Target Start/End: Complemental strand, 55166668 - 55166612
Alignment:
Q  25 ttgttgaagaagttaaattagtccatctaaattgacaccggaaagaatcaaacatga 81  Q
    |||||||| ||| |||||| |||||| ||||||||||||| | |||||| |||||||    
T  55166668 ttgttgaataagctaaattggtccatttaaattgacaccgaagagaatcgaacatga 55166612  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0006 (Bit Score: 38; Significance: 0.000000000003; HSPs: 1)
Name: scaffold0006
Description:

Target: scaffold0006; HSP #1
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 28 - 73
Target Start/End: Original strand, 162968 - 163013
Alignment:
Q  28 ttgaagaagttaaattagtccatctaaattgacaccggaaagaatc 73  Q
    ||||||||||||| ||||||||||||||||||||||||| ||||||    
T  162968 ttgaagaagttaagttagtccatctaaattgacaccggagagaatc 163013  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 38; Significance: 0.000000000003; HSPs: 6)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 28 - 77
Target Start/End: Original strand, 35672484 - 35672533
Alignment:
Q  28 ttgaagaagttaaattagtccatctaaattgacaccggaaagaatcaaac 77  Q
    ||||||||| |||||||||||||| |||||||||||||| ||||||||||    
T  35672484 ttgaagaagctaaattagtccatccaaattgacaccggagagaatcaaac 35672533  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 31 - 125
Target Start/End: Complemental strand, 40591843 - 40591751
Alignment:
Q  31 aagaagttaaattagtccatctaaattgacaccggaaagaatcaaacatgagattttgggaggagtacagtcccaagtccgaagcgaataccacc 125  Q
    ||||| |||||||| |||| |||||||| || || | |||||||||| ||||| ||||  ||||| ||| ||||||||||||||| |||||||||    
T  40591843 aagaaattaaattactccacctaaattggcatcgaagagaatcaaacctgagactttg--aggagcacactcccaagtccgaagccaataccacc 40591751  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 28 - 124
Target Start/End: Original strand, 16843754 - 16843850
Alignment:
Q  28 ttgaagaagttaaattagtccatctaaattgacaccggaaagaatcaaacatgagattttg-ggaggagtacagtcccaagtccgaagcgaataccac 124  Q
    ||||||||| ||||| || |||||||||||||||||||| |||||| ||| |||||| ||| ||||||| ||| ||||||| || | || ||||||||    
T  16843754 ttgaagaagctaaat-agcccatctaaattgacaccggagagaatcgaacctgagatcttgcggaggagcacactcccaagacctacgccaataccac 16843850  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 31 - 65
Target Start/End: Complemental strand, 35826425 - 35826391
Alignment:
Q  31 aagaagttaaattagtccatctaaattgacaccgg 65  Q
    ||||||||||||||||||| |||||||||||||||    
T  35826425 aagaagttaaattagtccacctaaattgacaccgg 35826391  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 31 - 72
Target Start/End: Original strand, 43292398 - 43292439
Alignment:
Q  31 aagaagttaaattagtccatctaaattgacaccggaaagaat 72  Q
    |||||| ||||||||| ||||||||||||||||||| |||||    
T  43292398 aagaagctaaattagttcatctaaattgacaccggagagaat 43292439  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 28 - 60
Target Start/End: Complemental strand, 36205310 - 36205278
Alignment:
Q  28 ttgaagaagttaaattagtccatctaaattgac 60  Q
    ||||||||| |||||||||||||||||||||||    
T  36205310 ttgaagaagctaaattagtccatctaaattgac 36205278  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 36; Significance: 0.00000000005; HSPs: 9)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 30 - 124
Target Start/End: Complemental strand, 7721484 - 7721389
Alignment:
Q  30 gaagaagttaaattagtccatctaaattgacaccggaaagaatcaaacatgagattttg-ggaggagtacagtcccaagtccgaagcgaataccac 124  Q
    ||||||| ||||||| |||||| ||||||||||| || |||||| |||||||||  ||| ||||||||||| ||||| |||| || | ||||||||    
T  7721484 gaagaagctaaattattccatccaaattgacaccagagagaatcgaacatgagaccttgaggaggagtacactcccaggtcccaaaccaataccac 7721389  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 28 - 125
Target Start/End: Original strand, 16708414 - 16708512
Alignment:
Q  28 ttgaagaagttaaattagtccatctaaattgacaccggaaagaatcaaacatgagattttg-ggaggagtacagtcccaagtccgaagcgaataccacc 125  Q
    ||||||||| |||||||||||||||||||||| |  ||| |||||| |||||||| | | | |||||| |||| |||||||||| || | |||||||||    
T  16708414 ttgaagaagctaaattagtccatctaaattgatattggagagaatcgaacatgagttctcgaggaggaatacactcccaagtccaaacccaataccacc 16708512  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 28 - 125
Target Start/End: Original strand, 17682650 - 17682748
Alignment:
Q  28 ttgaagaagttaaattagtccatctaaattgacaccggaaagaatcaaacatgagattttg-ggaggagtacagtcccaagtccgaagcgaataccacc 125  Q
    ||||||||| |||||||||||||||||||||| |  ||| |||||| |||||||| | | | |||||| |||| |||||||||| || | |||||||||    
T  17682650 ttgaagaagctaaattagtccatctaaattgatattggagagaatcgaacatgagttctcgaggaggaatacactcccaagtccaaacccaataccacc 17682748  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 28 - 122
Target Start/End: Original strand, 20335790 - 20335885
Alignment:
Q  28 ttgaagaagttaaattagtccatctaaattgacaccggaaagaatcaaacatgagattttg-ggaggagtacagtcccaagtccgaagcgaatacc 122  Q
    |||||||||||||||||| ||||| ||||||||| |||  |||||| ||| |||||  | | ||||||| ||| |||||||||| |||| ||||||    
T  20335790 ttgaagaagttaaattagcccatccaaattgacatcggtgagaatcgaacctgagacctcgaggaggagcacactcccaagtcccaagccaatacc 20335885  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 25 - 83
Target Start/End: Original strand, 4572253 - 4572311
Alignment:
Q  25 ttgttgaagaagttaaattagtccatctaaattgacaccggaaagaatcaaacatgaga 83  Q
    |||||||||||| |||||||| ||| | |||||||||||||| |||||| ||| |||||    
T  4572253 ttgttgaagaagataaattagcccacccaaattgacaccggagagaatcgaacctgaga 4572311  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 28 - 81
Target Start/End: Original strand, 46572169 - 46572222
Alignment:
Q  28 ttgaagaagttaaattagtccatctaaattgacaccggaaagaatcaaacatga 81  Q
    ||||||||| |||||||||||| | ||||||||||| || |||||| |||||||    
T  46572169 ttgaagaagctaaattagtccaaccaaattgacaccagagagaatcgaacatga 46572222  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 29 - 65
Target Start/End: Original strand, 3280446 - 3280482
Alignment:
Q  29 tgaagaagttaaattagtccatctaaattgacaccgg 65  Q
    |||||||| ||||||||||||||||||||| ||||||    
T  3280446 tgaagaagctaaattagtccatctaaattggcaccgg 3280482  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 31 - 75
Target Start/End: Complemental strand, 26526403 - 26526359
Alignment:
Q  31 aagaagttaaattagtccatctaaattgacaccggaaagaatcaa 75  Q
    ||||||||||||||  ||||| |||||||||||||| ||||||||    
T  26526403 aagaagttaaattaacccatccaaattgacaccggagagaatcaa 26526359  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 28 - 64
Target Start/End: Complemental strand, 27454834 - 27454798
Alignment:
Q  28 ttgaagaagttaaattagtccatctaaattgacaccg 64  Q
    |||||||||||||||||||||| ||||||||| ||||    
T  27454834 ttgaagaagttaaattagtccacctaaattgaaaccg 27454798  T

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Target: chr5 (Bit Score: 34; Significance: 0.0000000008; HSPs: 5)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 28 - 124
Target Start/End: Complemental strand, 29075898 - 29075801
Alignment:
Q  28 ttgaagaagttaaattagtccatctaaattgacaccggaaagaatcaaacatgagattttg-ggaggagtacagtcccaagtccgaagcgaataccac 124  Q
    ||||||||| |||||||| |||||||||||| |||| || |||||| |||||||||| | | ||||||| ||| |||||  ||| |||| ||||||||    
T  29075898 ttgaagaagctaaattagcccatctaaattggcaccagagagaatcgaacatgagatctcgaggaggagcacactcccagatcccaagccaataccac 29075801  T

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Target: chr5; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 25 - 72
Target Start/End: Original strand, 14424532 - 14424579
Alignment:
Q  25 ttgttgaagaagttaaattagtccatctaaattgacaccggaaagaat 72  Q
    |||||||||||| |||||| || ||||||||||||||||||| |||||    
T  14424532 ttgttgaagaagctaaatttgttcatctaaattgacaccggagagaat 14424579  T

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Target: chr5; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 28 - 65
Target Start/End: Original strand, 19949575 - 19949612
Alignment:
Q  28 ttgaagaagttaaattagtccatctaaattgacaccgg 65  Q
    |||||||||||||||||||| ||| |||||||||||||    
T  19949575 ttgaagaagttaaattagtctatccaaattgacaccgg 19949612  T

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Target: chr5; HSP #4
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 28 - 88
Target Start/End: Complemental strand, 9187532 - 9187473
Alignment:
Q  28 ttgaagaagttaaattagtccatctaaattgacaccggaaagaatcaaacatgagattttg 88  Q
    ||||||||| ||||||||||||   ||||||||| ||| ||||||||||| ||||||||||    
T  9187532 ttgaagaagctaaattagtccactcaaattgacatcgg-aagaatcaaacttgagattttg 9187473  T

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Target: chr5; HSP #5
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 31 - 83
Target Start/End: Original strand, 19087065 - 19087117
Alignment:
Q  31 aagaagttaaattagtccatctaaattgacaccggaaagaatcaaacatgaga 83  Q
    ||||||||||||||||||| |||||||| |||||   | ||||||||||||||    
T  19087065 aagaagttaaattagtccacctaaattgtcaccgacgaaaatcaaacatgaga 19087117  T

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Target: chr2 (Bit Score: 34; Significance: 0.0000000008; HSPs: 5)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 28 - 124
Target Start/End: Complemental strand, 11251204 - 11251107
Alignment:
Q  28 ttgaagaagttaaattagtccatctaaattgacaccggaaagaatcaaacatgagattttg-ggaggagtacagtcccaagtccgaagcgaataccac 124  Q
    ||||| ||||||||||||  || ||||||||||||| || |||||||||| |||||  ||| ||||||| ||| | |||||||| |||| ||||||||    
T  11251204 ttgaataagttaaattagcacacctaaattgacaccagagagaatcaaacctgagaccttgaggaggagcacacttccaagtcccaagccaataccac 11251107  T

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Target: chr2; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 28 - 83
Target Start/End: Original strand, 29197335 - 29197390
Alignment:
Q  28 ttgaagaagttaaattagtccatctaaattgacaccggaaagaatcaaacatgaga 83  Q
    ||||| |||||||||||| ||| |||||||| |||||| ||||||| |||||||||    
T  29197335 ttgaaaaagttaaattagcccacctaaattggcaccgggaagaatcgaacatgaga 29197390  T

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Target: chr2; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 28 - 83
Target Start/End: Original strand, 31573600 - 31573655
Alignment:
Q  28 ttgaagaagttaaattagtccatctaaattgacaccggaaagaatcaaacatgaga 83  Q
    |||||||||||||||||||||| ||||||||||| || | |||||| ||| |||||    
T  31573600 ttgaagaagttaaattagtccacctaaattgacatcgaagagaatcgaacctgaga 31573655  T

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Target: chr2; HSP #4
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 28 - 80
Target Start/End: Original strand, 11127962 - 11128014
Alignment:
Q  28 ttgaagaagttaaattagtccatctaaattgacaccggaaagaatcaaacatg 80  Q
    ||||||||| ||||||||  |||||||||||||||| ||  ||||||||||||    
T  11127962 ttgaagaagctaaattagcacatctaaattgacaccagagggaatcaaacatg 11128014  T

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Target: chr2; HSP #5
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 30 - 66
Target Start/End: Complemental strand, 38632037 - 38632001
Alignment:
Q  30 gaagaagttaaattagtccatctaaattgacaccgga 66  Q
    |||||| ||||||||||||||||||||||||| ||||    
T  38632037 gaagaaattaaattagtccatctaaattgacaacgga 38632001  T

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Target: chr6 (Bit Score: 32; Significance: 0.00000001; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 28 - 134
Target Start/End: Original strand, 31622950 - 31623057
Alignment:
Q  28 ttgaagaagttaaattagtccatctaaattgacaccggaaagaatcaaacatgagattttg-ggaggagtacagtcccaagtccgaagcgaataccaccg 126  Q
    ||||||||| |||||||| ||| | ||||||||||||||  || |||||| |||||  | | ||||||| ||| ||||| |||| |||| ||||||||||    
T  31622950 ttgaagaagctaaattagcccacccaaattgacaccggagtgattcaaacctgagacctcgaggaggagcacactcccaggtcccaagccaataccaccg 31623049  T
Q  127 gatcaacc 134  Q
    || |||||    
T  31623050 gaccaacc 31623057  T

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Target: chr6; HSP #2
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 28 - 66
Target Start/End: Complemental strand, 12852848 - 12852810
Alignment:
Q  28 ttgaagaagttaaattagtccatctaaattgacaccgga 66  Q
    ||||||||| |||||||||||||| ||||||||||||||    
T  12852848 ttgaagaaggtaaattagtccatccaaattgacaccgga 12852810  T

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Target: chr1 (Bit Score: 31; Significance: 0.00000005; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 31 - 81
Target Start/End: Complemental strand, 12725123 - 12725073
Alignment:
Q  31 aagaagttaaattagtccatctaaattgacaccggaaagaatcaaacatga 81  Q
    ||||||||||||||| ||| | |||||||||||||| | ||||||||||||    
T  12725123 aagaagttaaattagaccacccaaattgacaccggagataatcaaacatga 12725073  T

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Target: chr1; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 28 - 73
Target Start/End: Complemental strand, 1094642 - 1094597
Alignment:
Q  28 ttgaagaagttaaattagtccatctaaattgacaccggaaagaatc 73  Q
    |||||||||||||||||| ||| |||||||| ||||||| ||||||    
T  1094642 ttgaagaagttaaattagcccacctaaattggcaccggagagaatc 1094597  T

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Target: chr1; HSP #3
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 31 - 63
Target Start/End: Complemental strand, 35282470 - 35282438
Alignment:
Q  31 aagaagttaaattagtccatctaaattgacacc 63  Q
    ||||||||||||||| |||||||||||||||||    
T  35282470 aagaagttaaattagaccatctaaattgacacc 35282438  T

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Target: scaffold0115 (Bit Score: 29; Significance: 0.0000008; HSPs: 1)
Name: scaffold0115
Description:

Target: scaffold0115; HSP #1
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 28 - 84
Target Start/End: Original strand, 42623 - 42679
Alignment:
Q  28 ttgaagaagttaaattagtccatctaaattgacaccggaaagaatcaaacatgagat 84  Q
    |||||||||||||||||| ||| |||||||||||||  | |||||| ||| ||||||    
T  42623 ttgaagaagttaaattagcccacctaaattgacaccatagagaatcgaacttgagat 42679  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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