View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16676_high_9 (Length: 512)
Name: NF16676_high_9
Description: NF16676
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16676_high_9 |
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Alignment Details
Target: chr1 (Bit Score: 397; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 397; E-Value: 0
Query Start/End: Original strand, 64 - 503
Target Start/End: Complemental strand, 45804832 - 45804399
Alignment:
| Q |
64 |
ttagccaaaacccttcctagaaactccattaaatctttaatcgactgaatgtataggcacatgtaataagttaagaattactcaaaacgtgaccttatct |
163 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |
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| T |
45804832 |
ttagccaaaacccttcctagaaactccattaaatctttaatcgactgaatgtataggcacatgtaataagttaagaattactcaaaacgttaccttatct |
45804733 |
T |
|
| Q |
164 |
atgaaaatattacccagctcggctatatctatatgtgtgtcacataatatataggcttatcttcttttggtcacggagacttgagcagcaatgacagcct |
263 |
Q |
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|||||||||||||||||||||||||||| |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |
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| T |
45804732 |
atgaaaatattacccagctcggctatat------gtgtatcacataatatataggcttatcttcttttggtcacggagacttgagcagcaatggcagcct |
45804639 |
T |
|
| Q |
264 |
taagctgccagtttcattccatcaactacttgaattctcaaatggtcaaaagcagaagcaagcattctataatttcttgctcagcacaacctatacaaag |
363 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |
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| T |
45804638 |
taagctgccagtttcattccatcaactacttgaattctcaaatggtcaaaagcagaagcaagcattctataatttcctgctcagcacaacctatacaaag |
45804539 |
T |
|
| Q |
364 |
caatataaaggtactaacttaaagagcatttcaaaattcaaccctttgattcagttcaaatgagatattacattgtgatttcaattttcaatacccttta |
463 |
Q |
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|||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
45804538 |
caatataaaggtactaacttaaagagcatttcaaaattcaacactttgattcagttcaaatgagatattacattgtgatttcaattttcaatacccttta |
45804439 |
T |
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| Q |
464 |
tggaacaggttgtaataaatggagcagcaaaggaaatagg |
503 |
Q |
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| T |
45804438 |
tggaacaggttgtaataaatggagcagcaaaggaaatagg |
45804399 |
T |
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