View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16676_low_1 (Length: 1007)
Name: NF16676_low_1
Description: NF16676
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16676_low_1 |
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Alignment Details
Target: chr4 (Bit Score: 929; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 929; E-Value: 0
Query Start/End: Original strand, 14 - 994
Target Start/End: Complemental strand, 2090764 - 2089784
Alignment:
| Q |
14 |
catcacactcgcctatcattatctttatcaattcttcttgataatcataatcactctttaaatggagggtaaaatttttagaaagaagaggacaatgggg |
113 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2090764 |
catcacactcgcctatcattatctttatcaattcttcttgataatcataatcactctttaaatggagggtaaaatttttagaaagaagaggacaatgggg |
2090665 |
T |
|
| Q |
114 |
ataaggaagcctaaatccttattcaaccgtctccccacagagcttcaaacaaaaatctttggtgggctatctatgaaggatcaatcaaaggctatgtgtg |
213 |
Q |
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|||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2090664 |
ataaggaagcctaaatccttattcaaccatctccccacagagcttcaaacaaaaatctttggtgggctatctatgaaggatcaatcaaaggctatgtgtg |
2090565 |
T |
|
| Q |
214 |
tctcgcactcatggcgtaatcgcattctaatcacaacacttccaaaggagtatccattacaacctttggtgtttcctcacctttcccctcacccatttta |
313 |
Q |
| |
|
||||||||||||||||||||||||| |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2090564 |
tctcgcactcatggcgtaatcgcatcctaaccacaacacttccaaaggagtatccattacaacctttggtgtttcctcacctttcccctcacccatttta |
2090465 |
T |
|
| Q |
314 |
tggcctagaacaattttttaattggtgctcattagtgatgtgttgcaatgtcagttcaagaaatattatagacacatgcaatgggttattcttgttttgc |
413 |
Q |
| |
|
||||||| ||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2090464 |
tggcctacaacaattttttaattggtgctcattagtgatgtgttgcaatgtaagttcaagaaatattatagacacatgcaatgggttattcttgttttgc |
2090365 |
T |
|
| Q |
414 |
cataaggatggtcaagctaggaatattgtgcgtggtgtctaccactactatgtcatgaatcctataagaaaacaatgtgtggctattttgaagccttctg |
513 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
2090364 |
cataaggatggtcaagctaggaatattgtgcgtggtgtctaccactactatgtcatgaatcctataagaaaacaatgtgtggctattttgaagccttctg |
2090265 |
T |
|
| Q |
514 |
gacaattttttggaggaaattcatatgctgctctggcatatgacccttcagaatcttggttctttaagattgtacatttccaagatcatggccatattaa |
613 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |||||||||||||| || ||||||||||||||||| |
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|
| T |
2090264 |
gacaattttttggaggaaattcatatgctgctctggtatatgacccttcagaatcttggttcttcaagattgtacattttcaggatcatggccatattaa |
2090165 |
T |
|
| Q |
614 |
cattttctcctctatgactggcctttggacgaccttgactatcaattttcttcaatatatcaatgagtcttactgggtcagaaaatcgatttatctaaaa |
713 |
Q |
| |
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||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| ||||||||||| |
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| T |
2090164 |
tattttctcctctatgaccggcctttggacgaccttgactatcaattttcttcaatatatcaatgagtcttactgggtcaggaaatcggtttatctaaaa |
2090065 |
T |
|
| Q |
714 |
ggatctatttaccgactctcctgttcaggacaatatttattgaaaattaaagttgatcctcaagagaatgcctcgaatcaagctgagataataacacttc |
813 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
2090064 |
ggatctatttaccgactctcctgttcaggacaatatttattgaaaattaaagttgatcctcaagagaatgcctcgaatcaagctgagataataacacttc |
2089965 |
T |
|
| Q |
814 |
atcctgattgtgtttttgataattgtcaaagggagataaatctaaaagatggcaagatcttattggtctcatttagaggtgtaaattttgtttgttttga |
913 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
2089964 |
atcctgattgtgtttttgataattgtcaaagggagataaatctaaaagatggcaagatcttattggtctcatttagaggtgtaaattttgtttgttttga |
2089865 |
T |
|
| Q |
914 |
actcgttgaatgtgttacaatgggtgttagctcttatacatggcacacaattcatcgaaaagtgaataggaagttgttgat |
994 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2089864 |
actcgttgaatgtgttacaatgggtgttagctcttatacatggcacacaattcatcgaaaagtgaataggaagttgttgat |
2089784 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 66; Significance: 1e-28; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 66; E-Value: 1e-28
Query Start/End: Original strand, 385 - 824
Target Start/End: Original strand, 2878944 - 2879380
Alignment:
| Q |
385 |
acacatgcaatgggttattcttgttttgccataaggatggtcaagctaggaatattgtgcgtggtgtctaccactactatgtcatgaatcctataagaaa |
484 |
Q |
| |
|
||||||||||||| ||| | ||||||||||| || |||||| | |||| || || ||||||||||||| | ||||||||| ||||||| | | ||| |
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|
| T |
2878944 |
acacatgcaatggcttactattgttttgccacaatgatggtgaggctaccaacatcttgcgtggtgtctattattactatgtcctgaatccagtcacaaa |
2879043 |
T |
|
| Q |
485 |
acaatgtgtggctattttgaagccttctggacaattttttggaggaaattcatatgctgctctggcatatgacccttcagaatcttggttctttaagatt |
584 |
Q |
| |
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|||||||||| || || ||||||| |||||| | ||| || ||||||||||||||||||||||||||||| ||||||||||||| || |||||| |
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| T |
2879044 |
acaatgtgtgactgttatgaagcccataggacaaacctctggtgggtattcatatgctgctctggcatatgaccctgcagaatcttggtttttcaagatt |
2879143 |
T |
|
| Q |
585 |
gtacatttccaagatcatggccatattaacattttctcctctatgactggcctttggacgaccttgactatcaattttcttcaatatatcaatgagtctt |
684 |
Q |
| |
|
|| | ||| || | || | | ||| | |||||||||||||| ||||||| ||||||||| |||| ||| | ||| | | || || | |||||| |
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|
| T |
2879144 |
gtgcgttttcagggtcttcgtcatgtgaacattttctcctccgtgactggtaattggacgacattgaatattagtttgccagattacatttacgagtctg |
2879243 |
T |
|
| Q |
685 |
actgggtcagaaaatcgatttatctaaaaggatctatttaccgactctcctgttcaggacaatatttattgaaaattaaagttgatcctcaagagaatgc |
784 |
Q |
| |
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| ||| | | |||||| |||||| | ||||| |||||||| || ||| || || || |||||| |||||||||||||||||||||| ||||||| |
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| T |
2879244 |
attggataaaaaaatcaatttattttaaagggtctatttatcggctcaccaagtcgggg---tatttagtgaaaattaaagttgatcctcaggagaatgt |
2879340 |
T |
|
| Q |
785 |
ctcgaatcaagctgagataataacacttcatcctgattgt |
824 |
Q |
| |
|
||| ||||||||||| |||||||||| ||||||| |||| |
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|
| T |
2879341 |
ttcggatcaagctgaggtaataacactacatcctggttgt |
2879380 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 40; E-Value: 0.0000000000004
Query Start/End: Original strand, 95 - 250
Target Start/End: Original strand, 2878654 - 2878809
Alignment:
| Q |
95 |
aaagaagaggacaatggggataaggaagcctaaatccttattcaaccgtctccccacagagcttcaaacaaaaatctttggtgggctatctatgaaggat |
194 |
Q |
| |
|
||||||||| || ||||||| ||||||||| | |||||| |||||| |||||||| | | ||||||| ||||| ||| || || | || || ||||| |
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|
| T |
2878654 |
aaagaagagaactatggggaaaaggaagcccagatccttcttcaacaatctccccataaatattcaaacgaaaatattttgtaggttgtcgttggaggat |
2878753 |
T |
|
| Q |
195 |
caatcaaaggctatgtgtgtctcgcactcatggcgtaatcgcattctaatcacaac |
250 |
Q |
| |
|
|||||||| ||||||||||||||| | ||||||||||| | |||||| |||||| |
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|
| T |
2878754 |
caatcaaaagctatgtgtgtctcgaatgaatggcgtaatcacgttctaaacacaac |
2878809 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 188 - 229
Target Start/End: Complemental strand, 2727373 - 2727332
Alignment:
| Q |
188 |
gaaggatcaatcaaaggctatgtgtgtctcgcactcatggcg |
229 |
Q |
| |
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||||||||||||||| |||||||||||||| ||||||||||| |
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| T |
2727373 |
gaaggatcaatcaaaagctatgtgtgtctcacactcatggcg |
2727332 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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