View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16676_low_10 (Length: 529)
Name: NF16676_low_10
Description: NF16676
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16676_low_10 |
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Alignment Details
Target: chr7 (Bit Score: 235; Significance: 1e-130; HSPs: 4)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 235; E-Value: 1e-130
Query Start/End: Original strand, 275 - 513
Target Start/End: Complemental strand, 41240756 - 41240518
Alignment:
| Q |
275 |
ttgaacacataattagagcaaatagggtgagtgaaggattctaagcattgaaaattgaatgatgcatgttatccaaaaagtaaacatgggtttttgtcaa |
374 |
Q |
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| T |
41240756 |
ttgaacacataattagagcaaatagggtgagtgaaggattctaagcattgaaaattgaatgatgcatgttatccaaaaagtaaacatgggtttttgtcaa |
41240657 |
T |
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| Q |
375 |
aatgatatctttttgataaaattgcattgaattttatggagtgttcatgagcaagatttgtgtgccgtcaggatttcatgaccgcactgcagtcagacac |
474 |
Q |
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| T |
41240656 |
aatgatatctttttgataaaattgcattgaattttatggagtgttcatgagcaagatttgtgtgccgtcaggatttcatgaccgcactgcagtcagacac |
41240557 |
T |
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| Q |
475 |
atctggaccatccaattaagattgaacaaaccagatttt |
513 |
Q |
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| T |
41240556 |
atctggaccatccaattaagattggacaaaccagatttt |
41240518 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 224; E-Value: 1e-123
Query Start/End: Original strand, 1 - 244
Target Start/End: Complemental strand, 41241030 - 41240787
Alignment:
| Q |
1 |
atatctaaattaaattagtcattaaacaataacaacaagaatctaattccacacacataaaattaaaatcgacttcaaagatatcaactctaaaactaca |
100 |
Q |
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| T |
41241030 |
atatctaaattaaattagtcattaaacaataacaacaagaatctaattccacacacataaaattaaaatcgacttcaaagatatcaactctaaaactaca |
41240931 |
T |
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| Q |
101 |
tgtctcaagaagccatatgaacgcagagttatatatgtctgacttaataacacacctaaaatcatcgtactttgatgaagtatttgatcatccactaact |
200 |
Q |
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| T |
41240930 |
tgtctcacgaagccatatgaacgcagagtcatgtatgtttaacttaataacacacctaaaatcatcgtactttgatgaagtatttgatcatccactaact |
41240831 |
T |
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| Q |
201 |
aatatagcttcatggatgatggatctacaatccatgttgatctc |
244 |
Q |
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| T |
41240830 |
aatatagcttcatggatgatggatctacaatccatgttgatctc |
41240787 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 96; E-Value: 8e-47
Query Start/End: Original strand, 275 - 496
Target Start/End: Original strand, 41247049 - 41247269
Alignment:
| Q |
275 |
ttgaacacataattagagcaaatagggtgagtgaaggattctaagcattgaaaattgaatgatgcatgttatccaaaaagtaaacatgggtttttgtcaa |
374 |
Q |
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| T |
41247049 |
ttgaacatataattagagaaaatagggtgaaagaaggattctaaaca--gaaaattgaatgatacatgttatctaaaaagtaaacatggatttttgtcaa |
41247146 |
T |
|
| Q |
375 |
aatgatatctttttgataaaattgcattgaattttatggagtgttcatgag-caagatttgtgtgccgtcaggatttcatgaccgcactgcagtcagaca |
473 |
Q |
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| T |
41247147 |
aattatatcttttttatagaactgcattgaattttatgaagtgttcatgggacgaggtttgtgtgcactctggatgtcgtggccgcactacaatcagtca |
41247246 |
T |
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| Q |
474 |
catctggaccatccaattaagat |
496 |
Q |
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| T |
41247247 |
catctgaaccatctaattaagat |
41247269 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 61; E-Value: 6e-26
Query Start/End: Original strand, 39 - 217
Target Start/End: Original strand, 41246816 - 41246998
Alignment:
| Q |
39 |
gaatctaattccacacacataaaattaaaatcgacttcaaagatatcaactctaaaactacatgtctcaagaagccatatg--aacgcagagttatatat |
136 |
Q |
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||||||| ||||||||||||||||| |||| |||||| |||||| |||| |||||||| ||||||||||||| ||||| || || | | || ||| |
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| T |
41246816 |
gaatctacctccacacacataaaattcaaattgacttccaagataacaaccctaaaactgtatgtctcaagaagacatatacaaatacaaaatcatgtat |
41246915 |
T |
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| Q |
137 |
gtctgacttaataacacacctaaaatcatcgtactttgat--gaagtatttgatcatccactaactaatatagcttcatggat |
217 |
Q |
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| T |
41246916 |
gtctgacttaataacatacctaaagttattgtaatttgatatgaagtatttgatcatccatcagctaatatagcttcatggat |
41246998 |
T |
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