View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16676_low_12 (Length: 501)
Name: NF16676_low_12
Description: NF16676
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16676_low_12 |
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Alignment Details
Target: chr4 (Bit Score: 406; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 406; E-Value: 0
Query Start/End: Original strand, 19 - 489
Target Start/End: Original strand, 2608684 - 2609154
Alignment:
| Q |
19 |
ccaccgtgtttatcttcggacatgcccccggccacgtggattctaaaacaaggaaaacaccaaacatcatttgattccaaaattgtgacaattccacaag |
118 |
Q |
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| T |
2608684 |
ccaccgtgtttatcttcggacatgcccccggccacgtagattctaaaacaaggaaaacaccaaacatcatttggttccaaaattgtaacaattccacaag |
2608783 |
T |
|
| Q |
119 |
ctggattagtccttgaaacattcaacttaggaaggtacttgaattgtcttgtaaaagggttacaaagaaccaattgaagtgttgttgaatttgttacctt |
218 |
Q |
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||||||| || ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| ||||| |
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| T |
2608784 |
ctggatttgttcttgaaacattcaacttaggaaggtacttgaattgtcttgtaaaagggttacaaagaaccagttgaagtgttgttgaatttgtgacctt |
2608883 |
T |
|
| Q |
219 |
taaaaggatgaggctaccaattggaccaattggtttaagtgatgtttggaatggaaagaaatctaaggaaatttcgtgccannnnnnngtgatgggattg |
318 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |||||||||||| |
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| T |
2608884 |
caaaaggatgaggctaccaattggaccaattggtttaagtgatgtttggaatggaaagaaatctaatgaaatttcgtgccatttttttgtgatgggattg |
2608983 |
T |
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| Q |
319 |
tgagcataacaacatgatttttggtaattgcgaattggtagtgctaagaaccatggtgtagactcatgaggtttgtatttggttatgaaagttccacatg |
418 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |
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| T |
2608984 |
tgagcataacaacatgatttttggtaattgcgaattggtagtgctaagaaccatggtgtagactcatgaggtttgtatttggttatggaagttccacatg |
2609083 |
T |
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| Q |
419 |
tgtgccaattcttgcaagttgaccttgctcttgctaaggaatctggagagagaaaagagaagatggatgat |
489 |
Q |
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|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2609084 |
tgtgccaattcttgcaagttgatcttgctcttgctaaggaatctggagagagaaaagagaagatggatgat |
2609154 |
T |
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