View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16676_low_13 (Length: 497)
Name: NF16676_low_13
Description: NF16676
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16676_low_13 |
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Alignment Details
Target: chr8 (Bit Score: 409; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 409; E-Value: 0
Query Start/End: Original strand, 18 - 478
Target Start/End: Original strand, 2367006 - 2367466
Alignment:
| Q |
18 |
actttaactagaatatatctgcctagactaacgttggcttagtttgtaagaagttggctcgcccataaggtcttggggatcaacttccattaccaatgca |
117 |
Q |
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| T |
2367006 |
actttaactagaatatatctgcctagactaacgttggcttagtttgtaagaagttggctcgcccataaggtcatggggatcaaattccattaccaatgca |
2367105 |
T |
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| Q |
118 |
aagatctctttggtgggtgatctataagtacctcatttccgtttcaccttcaaacatgtcacaccgcgctccgaggtattgtcctctttaggtgtaagct |
217 |
Q |
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| T |
2367106 |
aagatctctttggtgagtgatctataagtacctcttttccgtttcaccttcaaacatgtcacaccgcgttccgaggtattgtcctctttaggtgtaagct |
2367205 |
T |
|
| Q |
218 |
cttcacggttttaacgaaagacgaatcgttgtattgtatataaactacccttggttaatgttccattccactcacaagtacaccacatcatcttctcagg |
317 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2367206 |
cttcacggttttaacgaaagacgaatcgttgtattgtatataaactaccgttggttaatgttccattccactcacaagtacaccacatcatcttctcagg |
2367305 |
T |
|
| Q |
318 |
tattgtccactttgggtcgttgagtgacctttcacagttttgtctgttataaaaagtgtctatttggattcatttggcctcgattcccatgcaatgtggg |
417 |
Q |
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| T |
2367306 |
tattgtccactttgggttgttgagtgacctttcacagttttgtctgttataaaaagtgtctagttggattcatttggcctcgattcccaagcaatgtggg |
2367405 |
T |
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| Q |
418 |
acttttaaggtgtaccaaaacaacccctgtttgcttttattgagtctaaaggtctgtgctg |
478 |
Q |
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| T |
2367406 |
acttttaaggtgtaccaaaacaacctctgttagcgtttattgagtctacaggtctgtgctg |
2367466 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 29; Significance: 0.0000007; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 388 - 440
Target Start/End: Original strand, 29534009 - 29534060
Alignment:
| Q |
388 |
catttggcctcgattcccatgcaatgtgggacttttaaggtgtaccaaaacaa |
440 |
Q |
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| T |
29534009 |
catttggcctcaattcccatacaatgtgagactttt-aggtgtaccgaaacaa |
29534060 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 29; Significance: 0.0000007; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 411 - 439
Target Start/End: Complemental strand, 11433404 - 11433376
Alignment:
| Q |
411 |
atgtgggacttttaaggtgtaccaaaaca |
439 |
Q |
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| T |
11433404 |
atgtgggacttttaaggtgtaccaaaaca |
11433376 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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