View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF16676_low_15 (Length: 429)

Name: NF16676_low_15
Description: NF16676
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF16676_low_15
NF16676_low_15
[»] chr2 (1 HSPs)
chr2 (9-429)||(2912716-2913129)


Alignment Details
Target: chr2 (Bit Score: 209; Significance: 1e-114; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 209; E-Value: 1e-114
Query Start/End: Original strand, 9 - 429
Target Start/End: Complemental strand, 2913129 - 2912716
Alignment:
Q  9 gagagatgaaccacctcgttgtctaatgttatattttattttggtttgttnnnnnnnnnnnn---tattatatgagcctttaacttcaatctagtgaaat 105  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||               ||||||||||||||||||||||||| |||||||||    
T  2913129 gagagatgaaccacctcgttgtctaatgttatattttattttggtttgttaaaaaaatatatatatattatatgagcctttaacttcaatttagtgaaat 2913030  T
Q  106 gtttacttctatcgagtggtagtgtaattgttaaaaattcacaatgnnnnnnnnnnnnnnnnntagagaatttagggttcaaactccggtcactgcggat 205  Q
     |||| || |||||||| |||||||||||||||||||| |||||||                 |||||||||||| ||||||||||||||    ||| ||    
T  2913029 atttatttttatcgagttgtagtgtaattgttaaaaat-cacaatgaaaaaaa----------tagagaatttagcgttcaaactccggt----gcgaat 2912945  T
Q  206 tgatggaagctcgtgggacattagaagataggttctataagcaaaatcagaagattcggataggttgagcaactcaaggctattaaagcaatttccttga 305  Q
    ||||| ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  2912944 tgatgaaagcttgtgggacattagaagataggttctataagcaaaatcagaagattcggataggttgagcaactcaaggctattaaagcaatttccttga 2912845  T
Q  306 ataattaat-----aactacccagaaactactcgtgttagtttcggnnnnnnnatctctaatacttcttaaaaattggttttacaggttcttttactttg 400  Q
    |||||||||     ||||||||||||||||||||||||||||||||       | ||||||||||| |||||||||||||||||||||||||||||||||    
T  2912844 ataattaattaataaactacccagaaactactcgtgttagtttcggtttttttacctctaatactttttaaaaattggttttacaggttcttttactttg 2912745  T
Q  401 tcaaatcgaagaaaatattcactaccttt 429  Q
    ||||||||||||||||||| |||||||||    
T  2912744 tcaaatcgaagaaaatattgactaccttt 2912716  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University