View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16676_low_17 (Length: 421)
Name: NF16676_low_17
Description: NF16676
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16676_low_17 |
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Alignment Details
Target: chr1 (Bit Score: 240; Significance: 1e-133; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 240; E-Value: 1e-133
Query Start/End: Original strand, 12 - 352
Target Start/End: Original strand, 25995112 - 25995460
Alignment:
| Q |
12 |
atgaaaatagaaagattaggggactaattacatcttatttttaaaataggggactagctccctcnnnnnnnnnnnntacggttcaaattacattagtgat |
111 |
Q |
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| T |
25995112 |
atgaaaatagaaagattaggggactaattacatcatatttttaaaataggggactagctccctcaaaaagaaaaaatagggttcgaattacattagtgat |
25995211 |
T |
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| Q |
112 |
gaaaatagatagattaaaactgtgattaaacttatttttcatggtgccggattcaaacctat--------gccaactttcaactgtgttgttcattacga |
203 |
Q |
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| T |
25995212 |
gaaaatagattgattaaaactgtgattaaacttatttttcatggtgccggattcaaacctatgcggctatgccaactttcaactgtgttgttcattacga |
25995311 |
T |
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| Q |
204 |
accataaaagtaaacttgcttcgtacaaatactattaaatggccattaaattaaaggtctgtgatgaagnnnnnnnngtgattggtgatgactgcatttg |
303 |
Q |
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| T |
25995312 |
accataaaagtaaacttgcttcgtacaaatactattaaatggccattaaattaaaggtctgtgatgaagaaaaaaaagtgattggtgatgtctgcatttg |
25995411 |
T |
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| Q |
304 |
gaatcctgcacggtatgttatggcagtctagttggtgcattaaattttg |
352 |
Q |
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| T |
25995412 |
gaatcctgcacggtatgttatggcagtctagttggtgcattaaattttg |
25995460 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 61; E-Value: 5e-26
Query Start/End: Original strand, 343 - 403
Target Start/End: Original strand, 25995646 - 25995706
Alignment:
| Q |
343 |
ttaaattttgcaatgtatccttattgtattaaatgcttgaattctctaaacatagtaatgt |
403 |
Q |
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| T |
25995646 |
ttaaattttgcaatgtatccttattgtattaaatgcttgaattctctaaacatagtaatgt |
25995706 |
T |
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