View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16676_low_18 (Length: 374)
Name: NF16676_low_18
Description: NF16676
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16676_low_18 |
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| [»] scaffold0187 (1 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 277; Significance: 1e-155; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 277; E-Value: 1e-155
Query Start/End: Original strand, 18 - 371
Target Start/End: Complemental strand, 42185988 - 42185635
Alignment:
| Q |
18 |
gttaaaagtggatacacctcccattcctgatcctactagaactcctattcttgttttgtccatctgttnnnnnnnnttggatgtctgttactgttagaat |
117 |
Q |
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| T |
42185988 |
gttaaaagtggatacacctcccattcctgatcctactagaactcctattcttgttttgtccatctgttaaaaaaa-ttggatatctgttactgttagaat |
42185890 |
T |
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| Q |
118 |
agcaattccggttcagaagaataaagatatgaaaaactcaatcaatttgattgtagttcctctcagttatttcaaatttaggatttacaacatccaacat |
217 |
Q |
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| T |
42185889 |
agcaattccggttcagaagaataaagatatgaaaaactcgatcaatttgattgtagttcctctcagttatttcaaatttaggatttacaacatacaatat |
42185790 |
T |
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| Q |
218 |
gtatttacatactacggttcagattacaacgttacccttaatcagtaactatgcgctgtactcaacggtagctatagtttgtgctatcaatcccaaggta |
317 |
Q |
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|||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42185789 |
gtatttacatactaaggttcagattacaacgttacccttaatcagtaactatgcgctgtactcaacggtagctatagtttgtgctatcaatcccaaggta |
42185690 |
T |
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| Q |
318 |
ggaaactttnnnnnnntta-ttttgagttttgacttacattgttaagggtttcat |
371 |
Q |
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| T |
42185689 |
ggaaactttaaaaaaattacttttgagttttgacttacattgttaagggtttcat |
42185635 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 37 - 85
Target Start/End: Complemental strand, 42195650 - 42195602
Alignment:
| Q |
37 |
cccattcctgatcctactagaactcctattcttgttttgtccatctgtt |
85 |
Q |
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| T |
42195650 |
cccattcctgatccaactagtactcctattcttgttttgtccatctgtt |
42195602 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 120 - 162
Target Start/End: Complemental strand, 42195591 - 42195549
Alignment:
| Q |
120 |
caattccggttcagaagaataaagatatgaaaaactcaatcaa |
162 |
Q |
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| T |
42195591 |
caatttcggttcaaaagaataaagatacgaaaaactcaatcaa |
42195549 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0187 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: scaffold0187
Description:
Target: scaffold0187; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 217 - 258
Target Start/End: Original strand, 1808 - 1849
Alignment:
| Q |
217 |
tgtatttacatactacggttcagattacaacgttacccttaa |
258 |
Q |
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| T |
1808 |
tgtatttaaatactacggttcagattacaaaattacccttaa |
1849 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 107 - 163
Target Start/End: Complemental strand, 35052267 - 35052212
Alignment:
| Q |
107 |
actgttagaatagcaattccggttcagaagaataaagatatgaaaaactcaatcaat |
163 |
Q |
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| T |
35052267 |
actgttagaacagcaat-ccggttcaaaagaataaagatacgaaaaacgcaaacaat |
35052212 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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