View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF16676_low_2 (Length: 945)
Name: NF16676_low_2
Description: NF16676
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16676_low_2 |
 | |
|
Alignment Details
Target: chr3 (Bit Score: 609; Significance: 0; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 609; E-Value: 0
Query Start/End: Original strand, 11 - 651
Target Start/End: Complemental strand, 52183596 - 52182956
Alignment:
| Q |
11 |
catcatcataagcataactgtacgcagagggacacgcagacttgaacatctctgagtactgtgttggactgcaactctgtggactcgaatgttcaccggt |
110 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |
|
|
| T |
52183596 |
catcatcataagcataactgtacgcagagggacacgcagacttgaacatctctgagtactgtgttgaactgcaactctgtggactcgaatgttcaccggt |
52183497 |
T |
|
| Q |
111 |
gcaacaaaattcctcggttttaaacgctgcacacgcactcttacaggccaccaccgaaccccctacctctgttacctgcaactccgctggacaatgactt |
210 |
Q |
| |
|
||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
52183496 |
acaacaaaattcctcggtattaaacgctgcacacgcactcttacaggccaccaccgaaccccctacctctgttacctgcaactccgctggacaatgactg |
52183397 |
T |
|
| Q |
211 |
ttcaaatctgcaacacaacctgcatactgacaatcacctgttcctctggttgcttgtatccctatcccgacattgtaaccatccaccaaactaacgtcat |
310 |
Q |
| |
|
|||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
52183396 |
ttcaaatccgcaacacaacctgcatactgacaatcacctgttcctctggttgcttgtatccctatcccgacattgtaaccatccaccaaactaacgtcat |
52183297 |
T |
|
| Q |
311 |
agaagtctttatctccactcacgcttccgatcgtaaattccgccaacgtcactggaggagcacctccaccattgcatttcaatcctccagtgcagtctcc |
410 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |
|
|
| T |
52183296 |
agaagtctttatctccactcacgcttccgatcgtaaattccgccaacgtcactggaggagcacctccaccattgcatttcaatcctccggtgcagtctcc |
52183197 |
T |
|
| Q |
411 |
ggtgatgcaattcccgttaccagcaccgtcgaagttgcagccggttctaccccagaaacgtccagaccagcctggcggagcagtgacgtcaaaagacgat |
510 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
52183196 |
ggtgatgcaattcccgttaccagcaccgtcgaagttgcagccggttctaccccagaaacgtccagaccagcctggcggagcagtgacgtcaaaagacgat |
52183097 |
T |
|
| Q |
511 |
ccttgcggcagagaaaatcccccgtcgccgagaagttcagcacggttgccagaaagtgttcccggccagattgtgttgttgcaacggttttctatggtaa |
610 |
Q |
| |
|
||| ||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
52183096 |
cctggcggcagagaaaatcccccgtcgccgagaagttcagcaccgttgccagaaagtgttcccggccagattgtgttgttgcaacggttttctatggtaa |
52182997 |
T |
|
| Q |
611 |
acattgtccccgaagctacattacctgcaaataaaaccata |
651 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
52182996 |
acattgtccccgaagctacattacctgcaaataaaaccata |
52182956 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 222; E-Value: 1e-122
Query Start/End: Original strand, 686 - 927
Target Start/End: Complemental strand, 52182927 - 52182687
Alignment:
| Q |
686 |
gacatggaacgtaaaatcagtgttaaatttcttgttcacctagtagaagcagcagaaggatgatgaatggaaatgtgtttgagttagtggtaagagccat |
785 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
52182927 |
gacatggaacgtaaaatcagtgttaaatttcttgttcacctagtagaagcagcagaaggatgatgaatggaaatgtgtttgagttagtggtaagagccat |
52182828 |
T |
|
| Q |
786 |
gagttttgtgaatgttcttttgtttgatagtattttgaagttagatttggaagagacttgagagggtaaacagagttgaagttgcggtgtgtccactgac |
885 |
Q |
| |
|
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |||||||||||||||| ||||||||||||||| |
|
|
| T |
52182827 |
gagttttgtgaatgttcttttgtttgatagtactttgaagttagatttggaagagacttgagagggt-aacagagttgaagttgtggtgtgtccactgac |
52182729 |
T |
|
| Q |
886 |
tgcattgaagaatttatagttacaatctctgagcgaagtgtt |
927 |
Q |
| |
|
|||||||||||||||||||||||||||| ||||||||||||| |
|
|
| T |
52182728 |
tgcattgaagaatttatagttacaatctttgagcgaagtgtt |
52182687 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University