View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16676_low_21 (Length: 357)
Name: NF16676_low_21
Description: NF16676
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16676_low_21 |
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| [»] chr3 (1 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 343; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 343; E-Value: 0
Query Start/End: Original strand, 3 - 357
Target Start/End: Original strand, 46826290 - 46826644
Alignment:
| Q |
3 |
cacagatcaatacattccatgaaacaacgtctctataagacatttgatcaaacatgttgcgtgcatgagaggtaaaaccaagtttcatgtacaaatcaat |
102 |
Q |
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| T |
46826290 |
cacaaatcaatacattccatgaaacaacgtctctataagacatttgatcaaacatgttgcgtgcatgagaggtaaaaccaagtttcatgtacaaatcaat |
46826389 |
T |
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| Q |
103 |
aagagaagtattaacatgaataaattggttaacaccgcgtttgagagactgggtttgaatctgacgtgcttgtaaagcagcggttgatggacaatgagtg |
202 |
Q |
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| T |
46826390 |
aagagaagtatgaacatgaataaattggttaacaccgcgtttgagacactgggtttgaatctgacgtgcttgtaaagcagcggttgatggacaatgagtg |
46826489 |
T |
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| Q |
203 |
aaagaaggagatgaaagataagctttgatgagtaatgaaaaagtgaattcatttgggttcacgttagcttgtaaaatttggcgaaatataacaagtgcag |
302 |
Q |
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| T |
46826490 |
aaagaaggagatgaaagataagctttgatgagtaatgaaaaagtgaattcatttgggttcacgttagcttgtaaaatttggcgaaatataacaagtgcag |
46826589 |
T |
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| Q |
303 |
ggctcgtcgcattttggaagagagagtgaaacagagaaagattgggtctgcttct |
357 |
Q |
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| T |
46826590 |
ggctcgtcgcattttggaagagagagtgaaacagagaaagattgggtctgcttct |
46826644 |
T |
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Target: chr5 (Bit Score: 73; Significance: 3e-33; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 73; E-Value: 3e-33
Query Start/End: Original strand, 3 - 91
Target Start/End: Complemental strand, 2736550 - 2736462
Alignment:
| Q |
3 |
cacagatcaatacattccatgaaacaacgtctctataagacatttgatcaaacatgttgcgtgcatgagaggtaaaaccaagtttcatg |
91 |
Q |
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| T |
2736550 |
cacaaatcaatagattccatgaaacaacatctctataagacatttgatcaaacaggttgcgtgcatgagaggtaaaaccaagtttcatg |
2736462 |
T |
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