View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16676_low_22 (Length: 356)
Name: NF16676_low_22
Description: NF16676
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16676_low_22 |
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| [»] scaffold0221 (1 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 233; Significance: 1e-129; HSPs: 4)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 233; E-Value: 1e-129
Query Start/End: Original strand, 18 - 346
Target Start/End: Original strand, 14455822 - 14456150
Alignment:
| Q |
18 |
aattccacctcatttgggaaacctttctcgcttgcaatctcttgatctcaccgattatagcttgcatgttgaaaatcttcaatgggtggctggtcttgta |
117 |
Q |
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||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| ||||| || || |
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| T |
14455822 |
aattccaccccatttgggaaacctttctcgcttgcaatctcttgatctcaccgattatagcttgcatgttgaaaatctacaatgggtagctggcctcgtc |
14455921 |
T |
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| Q |
118 |
tctttgaaatatcttgtcatgaatggagttgacctttctttagtagcagaaacaaactgggttagtgcattaagccaatttccatttttaatagaattgc |
217 |
Q |
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|| ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |||||||||||||||| |||||||||||||||| |
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| T |
14455922 |
tccttgaaatatcttgtcatgaatggagttgacctttcattagtagcagaaacaaactgggttagttcattaagccaatttccttttttaatagaattgc |
14456021 |
T |
|
| Q |
218 |
acctatctttctgtcaactttttggtcatattccatctcccccatctcacaattttacttcacttgctattctagatcttagcactaataactttgcttc |
317 |
Q |
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| ||| ||||||||| |||||||||||||||||||||||||| |||||||||||||||||||||||| ||||||||||||| | ||||| ||||| ||| |
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| T |
14456022 |
atctacatttctgtcagctttttggtcatattccatctcccccgtctcacaattttacttcacttgctgttctagatcttagtattaatagctttgtttc |
14456121 |
T |
|
| Q |
318 |
aaagatacctgaatggcttactagtatta |
346 |
Q |
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|||||||| || |||||||||| ||||| |
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| T |
14456122 |
caagatacccgattggcttactaatatta |
14456150 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 142; E-Value: 2e-74
Query Start/End: Original strand, 18 - 299
Target Start/End: Complemental strand, 14495528 - 14495247
Alignment:
| Q |
18 |
aattccacctcatttgggaaacctttctcgcttgcaatctcttgatctcaccgattatagcttgcatgttgaaaatcttcaatgggtggctggtcttgta |
117 |
Q |
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||||||||| ||||||||||||||||||| |||||||||| |||||||||| ||| |||||||||||||||||||||| ||||||||| |||| ||||| |
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| T |
14495528 |
aattccaccccatttgggaaacctttctcacttgcaatctattgatctcacagataatagcttgcatgttgaaaatctacaatgggtgactggccttgtc |
14495429 |
T |
|
| Q |
118 |
tctttgaaatatcttgtcatgaatggagttgacctttctttagtagcagaaacaaactgggttagtgcattaagccaatttccatttttaatagaattgc |
217 |
Q |
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|||||||||||||||| |||| |||||||||||||||| | ||||||| |||| ||| |||||||||| ||| ||| |||| |||||||||||||||| |
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| T |
14495428 |
tctttgaaatatcttgccatggatggagttgacctttcatcggtagcaggaacagacttggttagtgcagtaaaccaccttccttttttaatagaattgc |
14495329 |
T |
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| Q |
218 |
acctatctttctgtcaactttttggtcatattccatctcccccatctcacaattttacttcacttgctattctagatcttag |
299 |
Q |
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| ||||||| || || |||||||| || ||| ||||||| |||||| ||||||||||||||||||| ||||| ||||||| |
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| T |
14495328 |
atctatcttcttgccatctttttggccaaatttcatctccttcatctctcaattttacttcacttgcttttctaaatcttag |
14495247 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 122; E-Value: 2e-62
Query Start/End: Original strand, 18 - 291
Target Start/End: Original strand, 14460312 - 14460585
Alignment:
| Q |
18 |
aattccacctcatttgggaaacctttctcgcttgcaatctcttgatctcaccgattatagcttgcatgttgaaaatcttcaatgggtggctggtcttgta |
117 |
Q |
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||||||||| ||||||||||||||||||| |||||||| ||||||||||| | | ||||||||||||||||| |||||||||| | ||| ||||| |
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| T |
14460312 |
aattccaccccatttgggaaacctttctcacttgcaatatcttgatctcaaaactgttggcttgcatgttgaaaattttcaatgggttgttggccttgtc |
14460411 |
T |
|
| Q |
118 |
tctttgaaatatcttgtcatgaatggagttgacctttctttagtagcagaaacaaactgggttagtgcattaagccaatttccatttttaatagaattgc |
217 |
Q |
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|||||||||||||||| ||||||||||||||||||||| | |||||||| |||| ||| |||||||||| ||| ||| |||| |||||||||||||||| |
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| T |
14460412 |
tctttgaaatatcttgccatgaatggagttgacctttcatcagtagcaggaacagacttggttagtgcagtaaaccaccttccttttttaatagaattgc |
14460511 |
T |
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| Q |
218 |
acctatctttctgtcaactttttggtcatattccatctcccccatctcacaattttacttcacttgctattcta |
291 |
Q |
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| ||||||| || || |||||||| || ||| ||||||| |||||| ||||||||||||||||||| ||||| |
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| T |
14460512 |
atctatcttcttgccatctttttggccaaatttcatctccttcatctctcaattttacttcacttgcttttcta |
14460585 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 108; E-Value: 4e-54
Query Start/End: Original strand, 18 - 329
Target Start/End: Complemental strand, 14471107 - 14470796
Alignment:
| Q |
18 |
aattccacctcatttgggaaacctttctcgcttgcaatctcttgatctcaccgattatagcttgcatgttgaaaatcttcaatgggtggctggtcttgta |
117 |
Q |
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||||||||| ||||||||||| ||||||| ||||||||||||||||||| | || ||| ||||||||||||||||| || ||| ||||||| ||||| |
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| T |
14471107 |
aattccaccccatttgggaaatctttctcacttgcaatctcttgatctcggtgcttttagattgcatgttgaaaatctacactggttggctggccttgtc |
14471008 |
T |
|
| Q |
118 |
tctttgaaatatcttgtcatgaatggagttgacctttctttagtagcagaaacaaactgggttagtgcattaagccaatttccatttttaatagaattgc |
217 |
Q |
| |
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||||||||| |||||| |||| || ||||||||||||| | || || |||| | ||||||||| || | | ||| | || | |||||| |||||| |
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| T |
14471007 |
tctttgaaacatcttgccatggatagagttgacctttcatcggtggcgagaacagattgggttagtacactgaaccagctaccttctttaatgaaattgc |
14470908 |
T |
|
| Q |
218 |
acctatctttctgtcaactttttggtcatattccatctcccccatctcacaattttacttcacttgctattctagatcttagcactaataactttgcttc |
317 |
Q |
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| ||||||| || |||||||||||||||||||||| ||| |||||| ||||||||||||||||||| || |||||||||| |||||||||||| ||| |
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| T |
14470907 |
atctatcttcttgcaaactttttggtcatattccatcccccacatctctcaattttacttcacttgctgttttagatcttagttctaataactttgtttc |
14470808 |
T |
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| Q |
318 |
aaagatacctga |
329 |
Q |
| |
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|||||||||||| |
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| T |
14470807 |
aaagatacctga |
14470796 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0221 (Bit Score: 73; Significance: 3e-33; HSPs: 1)
Name: scaffold0221
Description:
Target: scaffold0221; HSP #1
Raw Score: 73; E-Value: 3e-33
Query Start/End: Original strand, 18 - 126
Target Start/End: Original strand, 9891 - 9999
Alignment:
| Q |
18 |
aattccacctcatttgggaaacctttctcgcttgcaatctcttgatctcaccgattatagcttgcatgttgaaaatcttcaatgggtggctggtcttgta |
117 |
Q |
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||||||||| ||||||||||||||||||| ||||||||||||||||||||| ||| |||||||||||||||||||||| |||||||||| ||| |||| |
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| T |
9891 |
aattccaccccatttgggaaacctttctctcttgcaatctcttgatctcacagataatagcttgcatgttgaaaatctacaatgggtggatggatttgtc |
9990 |
T |
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| Q |
118 |
tctttgaaa |
126 |
Q |
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||||||||| |
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| T |
9991 |
tctttgaaa |
9999 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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