View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF16676_low_26 (Length: 316)
Name: NF16676_low_26
Description: NF16676
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16676_low_26 |
 | |
|
Alignment Details
Target: chr7 (Bit Score: 116; Significance: 5e-59; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 116; E-Value: 5e-59
Query Start/End: Original strand, 185 - 312
Target Start/End: Complemental strand, 38862827 - 38862700
Alignment:
| Q |
185 |
gctaataagttaagctcaatagttggtccagatattcagcacccaaatcctcaaaaacaaacacattttgagaattaatattggtctcaatctgaatttg |
284 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |
|
|
| T |
38862827 |
gctaataagttaagctcaatagttggtccagatattcagcacccaaatcctcaaaaacaaacaaattttgagaattaatattggtctcaatctgaatttg |
38862728 |
T |
|
| Q |
285 |
atcactatgatattcacctttgcttctc |
312 |
Q |
| |
|
||||||||||||||||| |||| ||||| |
|
|
| T |
38862727 |
atcactatgatattcacttttgattctc |
38862700 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 96; E-Value: 4e-47
Query Start/End: Original strand, 18 - 138
Target Start/End: Complemental strand, 38862994 - 38862874
Alignment:
| Q |
18 |
acaacagtgcaaaatnnnnnnnttcaagaatgaggtaatgatgatgacgatgaaggaagatgaggaatattcttatagaacatttatcctgtaatcatga |
117 |
Q |
| |
|
||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
38862994 |
acaacagtgcaaaataaaaaaattcaagaatgaggtaatgatgatgacgatgaaggaagatgaggaatattcttatagaacatttatcctgtaatcatga |
38862895 |
T |
|
| Q |
118 |
attaagaattcaaagttgatg |
138 |
Q |
| |
|
|||||||||||||| |||||| |
|
|
| T |
38862894 |
attaagaattcaaaattgatg |
38862874 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 55; Significance: 1e-22; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 186 - 272
Target Start/End: Original strand, 19719627 - 19719713
Alignment:
| Q |
186 |
ctaataagttaagctcaatagttggtccagatattcagcacccaaatcctcaaaaacaaacacattttgagaattaatattggtctc |
272 |
Q |
| |
|
|||| ||||||||||||||||||| || |||||||||||||||||||| ||||| ||||||||||||| ||| ||| |||||||||| |
|
|
| T |
19719627 |
ctaagaagttaagctcaatagttgctcaagatattcagcacccaaatcttcaaacacaaacacatttttagatttagtattggtctc |
19719713 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 186 - 272
Target Start/End: Original strand, 19892512 - 19892598
Alignment:
| Q |
186 |
ctaataagttaagctcaatagttggtccagatattcagcacccaaatcctcaaaaacaaacacattttgagaattaatattggtctc |
272 |
Q |
| |
|
|||| ||||||||||||||||||| || |||||||||||||||||||| ||||| |||||||||| || ||| ||| |||||||||| |
|
|
| T |
19892512 |
ctaagaagttaagctcaatagttgctcaagatattcagcacccaaatcttcaaagacaaacacatgtttagatttagtattggtctc |
19892598 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 211 - 295
Target Start/End: Complemental strand, 19840935 - 19840851
Alignment:
| Q |
211 |
tccagatattcagcacccaaatcctcaaaaacaaacacattttgagaattaatattggtctcaatctgaatttgatcactatgat |
295 |
Q |
| |
|
||||||||||| | ||||||||||||||| ||||||||||||||||| ||| ||||||| || |||||||| |||||||||||| |
|
|
| T |
19840935 |
tccagatattctgaacccaaatcctcaaacacaaacacattttgagatttagtattggtttctctctgaattcgatcactatgat |
19840851 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University