View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16676_low_28 (Length: 294)
Name: NF16676_low_28
Description: NF16676
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16676_low_28 |
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Alignment Details
Target: chr2 (Bit Score: 100; Significance: 2e-49; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 100; E-Value: 2e-49
Query Start/End: Original strand, 20 - 127
Target Start/End: Complemental strand, 26306093 - 26305987
Alignment:
| Q |
20 |
ctcatctcattcgtgttcttcatcttgctcgaaacggtgtttatctcagaggtaaaaactcgtttatgttccatattttcattcaatttgttctgtactg |
119 |
Q |
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| T |
26306093 |
ctcatctcattcgtgttcttcatcttgctcgaaacggtgtttatctcagaggt-aaaactcgtttatgttccatattttcattcaatttgttctgtactg |
26305995 |
T |
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| Q |
120 |
gctctgat |
127 |
Q |
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|||||||| |
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| T |
26305994 |
gctctgat |
26305987 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 123 - 187
Target Start/End: Complemental strand, 26305958 - 26305894
Alignment:
| Q |
123 |
ctgatcgtaatgtttgttcttaaatgtgtattctgtcacacatagttcaaaactgcggtacacaa |
187 |
Q |
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| T |
26305958 |
ctgatcgtaatgtttgttcttaaatgtgtattctgtcacacatagttcaaaactgcggtacacaa |
26305894 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 59; E-Value: 5e-25
Query Start/End: Original strand, 213 - 283
Target Start/End: Complemental strand, 26305898 - 26305828
Alignment:
| Q |
213 |
cacaatcatatttgtagctgcatttgtcagcattttagaactatactgtcacaattgattcttctgtctgt |
283 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||| |||||||||||| ||||| ||||||| |
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| T |
26305898 |
cacaatcatatttgtagctgcatttgtcagcattttagaactatgctgtcacaattgcttcttttgtctgt |
26305828 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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