View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF16676_low_3 (Length: 753)
Name: NF16676_low_3
Description: NF16676
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16676_low_3 |
 | |
|
Alignment Details
Target: chr5 (Bit Score: 452; Significance: 0; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 452; E-Value: 0
Query Start/End: Original strand, 261 - 736
Target Start/End: Complemental strand, 28384950 - 28384475
Alignment:
| Q |
261 |
gtcgatgaatttctattgaatactagcataaaaatgctttgctgttttcaggatttcagtcgatgattttgttttacttatcattgcatatttcaatttt |
360 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
28384950 |
gtcgatgaatttctattgaatactagcataaaaatgctttgctgttttcaggatttcagtcgatgattttgttttacttatcattgcatatttcaatttt |
28384851 |
T |
|
| Q |
361 |
cactgtggtactacgttgaagcagtaataaatgtattttctttgtgaaagaagatgtatattatattttattttattctgtaacattagtaaatatgttg |
460 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| ||||||| |
|
|
| T |
28384850 |
cactgtggtactacgttgaagcagtaataaatgtattttctttgtgaaagaagatgtattttatattttattttattctgtaacattagtaactatgttg |
28384751 |
T |
|
| Q |
461 |
aatcagtattatgcaaatgaatgtggtactactctttatctggtgtcaaggttcttggttctgtttcaggtttaactccaattttaagtatcacaagtcc |
560 |
Q |
| |
|
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |
|
|
| T |
28384750 |
aatcagtattatgcaaatcaatgtggtactactctttatctggtgtcaaggttcttggttctgtttcaggtttaactccaattttaagtatcataagtcc |
28384651 |
T |
|
| Q |
561 |
ttctatacggtctcaaacaatcccatatgcaataatattcaaagttggcatcaacctggatctctttaggataaaatcaatcctcaaatgatcacttcat |
660 |
Q |
| |
|
||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
28384650 |
ttctatatggtctcaaacaatcccatatgcaataatattcaaagttggcatcaacctggatctctttaggataaaatcaatcctcaaatgatcacttcat |
28384551 |
T |
|
| Q |
661 |
ttttagtagctcagttgttatctttcaggaaaaagctcacaaacatcggtatgggttaatagctcacgagaataac |
736 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |
|
|
| T |
28384550 |
ttttagtagctcagttgttatctttcaggaaaaagctcacaaacatcggtataggttaatagctcacgagaataac |
28384475 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 241; E-Value: 1e-133
Query Start/End: Original strand, 11 - 263
Target Start/End: Complemental strand, 28385231 - 28384979
Alignment:
| Q |
11 |
gagcagagataacatagagaaggctatgaggagattgatggacggtggcgatgaagctgaatatatgagacaacgtgctcgagagttaggagagaaggct |
110 |
Q |
| |
|
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |
|
|
| T |
28385231 |
gagcagagataacatagagaaggctatgaggaaattgatggacggtggcgatgaagctgaaaatatgagacaacgtgctcgagagttaggagagaaggct |
28385132 |
T |
|
| Q |
111 |
acacgagctgttaaagaaggtggttcctctcataataatttgttagctttaatcgacgaacttaaaagattgagagacagcaaaccacatgattaatcaa |
210 |
Q |
| |
|
|||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
28385131 |
acacgagctgttaaagaaggtggttcctcttataataatttgttagctttaatcgacgaacttaaaagattgagagacagcaaaccacatgattaatcaa |
28385032 |
T |
|
| Q |
211 |
atgaatatggtatgagttttttgaacttatcctaataacgtcgttgtttcgtc |
263 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
28385031 |
atgaatatggtatgagttttttgaacttatcctaataacgtcgttgtttcgtc |
28384979 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 146; E-Value: 2e-76
Query Start/End: Original strand, 13 - 262
Target Start/End: Complemental strand, 12540580 - 12540331
Alignment:
| Q |
13 |
gcagagataacatagagaaggctatgaggagattgatggacggtggcgatgaagctgaatatatgagacaacgtgctcgagagttaggagagaaggctac |
112 |
Q |
| |
|
|||||||| |||||||||||||||||||||||||||||| ||||| ||||||||||| ||||||||| |||||| |||||| | ||||||||||||| |
|
|
| T |
12540580 |
gcagagatggcatagagaaggctatgaggagattgatggatggtggttatgaagctgaaaatatgagactacgtgcacgagagattggagagaaggctag |
12540481 |
T |
|
| Q |
113 |
acgagctgttaaagaaggtggttcctctcataataatttgttagctttaatcgacgaacttaaaagattgagagacagcaaaccacatgattaatcaaat |
212 |
Q |
| |
|
|||||||||| |||||||||||||||||||||||||||||||| |||| ||||||||| |||||||||| |||||| |||| ||||||||||||| ||| |
|
|
| T |
12540480 |
acgagctgttcaagaaggtggttcctctcataataatttgttatctttgatcgacgaaattaaaagatttagagactgcaagccacatgattaattaaag |
12540381 |
T |
|
| Q |
213 |
gaatatggtatgagttttttgaacttatcctaataacgtcgttgtttcgt |
262 |
Q |
| |
|
|| ||| | ||| ||||| |||| |||||||||||||||||||||||||| |
|
|
| T |
12540380 |
gagtattgcatgtgttttctgaatttatcctaataacgtcgttgtttcgt |
12540331 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 105; Significance: 5e-52; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 105; E-Value: 5e-52
Query Start/End: Original strand, 11 - 207
Target Start/End: Original strand, 3417809 - 3418005
Alignment:
| Q |
11 |
gagcagagataacatagagaaggctatgaggagattgatggacggtggcgatgaagctgaatatatgagacaacgtgctcgagagttaggagagaaggct |
110 |
Q |
| |
|
|||||||||| ||||||||||||| |||||||||||||||||| || | ||||| |||||| |||||||| ||||||||||||| | |||||||||||| |
|
|
| T |
3417809 |
gagcagagatgacatagagaaggcaatgaggagattgatggacagtagtgatgaggctgaaggtatgagactacgtgctcgagagcttggagagaaggct |
3417908 |
T |
|
| Q |
111 |
acacgagctgttaaagaaggtggttcctctcataataatttgttagctttaatcgacgaacttaaaagattgagagacagcaaaccacatgattaat |
207 |
Q |
| |
|
| ||||||| || |||||||||||||||| ||| ||||||||||| |||| |||||||||||||||| ||||||||| |||| |||| |||||||| |
|
|
| T |
3417909 |
aaacgagctattcaagaaggtggttcctcacatcataatttgttaactttgatcgacgaacttaaaaagttgagagactgcaagccacttgattaat |
3418005 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 91; Significance: 1e-43; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 91; E-Value: 1e-43
Query Start/End: Original strand, 11 - 248
Target Start/End: Complemental strand, 13440097 - 13439859
Alignment:
| Q |
11 |
gagcagagataacatagagaaggctatgaggagattgatggacggtggcgatgaagctgaatatatgagacaacgtgctcgagagttaggagagaaggct |
110 |
Q |
| |
|
|||||| |||||||||||||||||| |||||||||||||||| ||| ||||||||| || ||||||| | || ||||| |||||| ||||| |||||| |
|
|
| T |
13440097 |
gagcagggataacatagagaaggctgtgaggagattgatggagaatggtgatgaagctaaaaatatgaggctacttgctcaagagtttggagaaaaggct |
13439998 |
T |
|
| Q |
111 |
acacgagctgttaaagaaggtggttcctctcataataatttgttagctttaatcgacgaacttaaaagattgagagacagcaaaccacatgattaa-tca |
209 |
Q |
| |
|
|||| |||| || |||||||||| || ||| ||||||||||||| |||||||| || ||||||||||||||||||||| ||| | |||||||||| ||| |
|
|
| T |
13439997 |
acacaagctattcaagaaggtggctcgtcttataataatttgttggctttaattgaagaacttaaaagattgagagaccccaagcgacatgattaattca |
13439898 |
T |
|
| Q |
210 |
aatgaatatggtatgagttttttgaacttatcctaataa |
248 |
Q |
| |
|
|| || ||| || | ||||||| ||| ||||||||||| |
|
|
| T |
13439897 |
aaggactattgtctatgttttttcaacctatcctaataa |
13439859 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 90; E-Value: 4e-43
Query Start/End: Original strand, 11 - 188
Target Start/End: Complemental strand, 13448260 - 13448083
Alignment:
| Q |
11 |
gagcagagataacatagagaaggctatgaggagattgatggacggtggcgatgaagctgaatatatgagacaacgtgctcgagagttaggagagaaggct |
110 |
Q |
| |
|
||||||||||| ||||||||||||| | |||||||||||||||||||| |||||||||||| |||| || | ||||||||||||||| ||||| || ||| |
|
|
| T |
13448260 |
gagcagagatagcatagagaaggctgtaaggagattgatggacggtggtgatgaagctgaaaatatcaggctacgtgctcgagagtttggagaaaaagct |
13448161 |
T |
|
| Q |
111 |
acacgagctgttaaagaaggtggttcctctcataataatttgttagctttaatcgacgaacttaaaagattgagagac |
188 |
Q |
| |
|
| || |||| || |||||||||| || ||| ||||||||||||| ||||| || |||||||||||||||| ||||||| |
|
|
| T |
13448160 |
atacaagctattcaagaaggtggctcgtcttataataatttgttggctttgattgacgaacttaaaagatcgagagac |
13448083 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 86; E-Value: 1e-40
Query Start/End: Original strand, 11 - 263
Target Start/End: Complemental strand, 13454731 - 13454478
Alignment:
| Q |
11 |
gagcagagataacatagagaaggctatgaggagattgatggacggtggcgatgaagctgaatatatgagacaacgtgctcgagagttaggagagaaggct |
110 |
Q |
| |
|
||||| ||||| ||||||||||||| ||||||||||||||| |||||| ||||||||| || |||| || ||||||||||||||| ||||| |||||| |
|
|
| T |
13454731 |
gagcaaagatagcatagagaaggctgtgaggagattgatgggcggtggtgatgaagctaaaaatatcagggtacgtgctcgagagtttggagaaaaggct |
13454632 |
T |
|
| Q |
111 |
acacgagctgttaaagaaggtggttcctctcataataatttgttagctttaatcgacgaacttaaaagattgagagacagcaaaccacatgattaa-tca |
209 |
Q |
| |
|
|||| |||| || || ||||||| || ||| ||||||||||||| ||||| || || |||||||||||||||||| || ||| || ||||||||| ||| |
|
|
| T |
13454631 |
acacaagctattcaaaaaggtggctcatcttataataatttgttggctttgattgatgaacttaaaagattgagaaacctcaagccgcatgattaattca |
13454532 |
T |
|
| Q |
210 |
aatgaatatggtatgagttttttgaacttatcctaataacgtcgttgtttcgtc |
263 |
Q |
| |
|
|| || || || | |||||||| ||||| | |||||||| | ||||||||||| |
|
|
| T |
13454531 |
aaggagcattgtgtaagttttttcaactttttctaataacattgttgtttcgtc |
13454478 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 73; Significance: 6e-33; HSPs: 5)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 73; E-Value: 6e-33
Query Start/End: Original strand, 17 - 205
Target Start/End: Complemental strand, 48961182 - 48960994
Alignment:
| Q |
17 |
agataacatagagaaggctatgaggagattgatggacggtggcgatgaagctgaatatatgagacaacgtgctcgagagttaggagagaaggctacacga |
116 |
Q |
| |
|
|||||| ||||||||||| |||| | ||| ||||||||||| |||||||| ||| |||| |||| |||||||||||||| || || ||||||| | || |
|
|
| T |
48961182 |
agataatatagagaaggcagtgagaaaattaatggacggtggtgatgaagccgaagatataagacggcgtgctcgagagtttggggataaggctatatga |
48961083 |
T |
|
| Q |
117 |
gctgttaaagaaggtggttcctctcataataatttgttagctttaatcgacgaacttaaaagattgagagacagcaaaccacatgatta |
205 |
Q |
| |
|
|||||| ||| ||| || || ||||||||||||||||| |||||||| || || |||||||||||||||||||| || |||| |||||| |
|
|
| T |
48961082 |
gctgttcaagtaggcggctcatctcataataatttgttggctttaattgatgatcttaaaagattgagagacaggaagccacttgatta |
48960994 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 64; E-Value: 1e-27
Query Start/End: Original strand, 18 - 193
Target Start/End: Complemental strand, 48965219 - 48965044
Alignment:
| Q |
18 |
gataacatagagaaggctatgaggagattgatggacggtggcgatgaagctgaatatatgagacaacgtgctcgagagttaggagagaaggctacacgag |
117 |
Q |
| |
|
|||| ||||||||||||| ||||||||||||||||| |||| ||||||||||| | || ||| ||||||| |||||| ||||| ||||||| ||||| |
|
|
| T |
48965219 |
gatagcatagagaaggctgtgaggagattgatggacagtggtgatgaagctgagaaaattagaagtcgtgctcaagagtttggagaaaaggctagacgag |
48965120 |
T |
|
| Q |
118 |
ctgttaaagaaggtggttcctctcataataatttgttagctttaatcgacgaacttaaaagattgagagacagcaa |
193 |
Q |
| |
|
| || |||||||||| || |||||||| ||||||||||| || || || || || |||||||||||||| ||||| |
|
|
| T |
48965119 |
ccattcaagaaggtggctcgtctcataagaatttgttagccttgattgatgatctcaaaagattgagagatagcaa |
48965044 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 64; E-Value: 1e-27
Query Start/End: Original strand, 14 - 189
Target Start/End: Complemental strand, 48967352 - 48967177
Alignment:
| Q |
14 |
cagagataacatagagaaggctatgaggagattgatggacggtggcgatgaagctgaatatatgagacaacgtgctcgagagttaggagagaaggctaca |
113 |
Q |
| |
|
|||||||||||||||||| ||||| || |||||||||||| || |||||||||||| | || ||||||||||||||||| || ||||| ||||||||| |
|
|
| T |
48967352 |
cagagataacatagagaaagctataagaagattgatggacaatgacgatgaagctgagaagatcagacaacgtgctcgagactttggagaaaaggctaca |
48967253 |
T |
|
| Q |
114 |
cgagctgttaaagaaggtggttcctctcataataatttgttagctttaatcgacgaacttaaaagattgagagaca |
189 |
Q |
| |
|
||||| || |||||||||| | ||| |||||||||| | ||||| || || || ||||||||| ||||||||| |
|
|
| T |
48967252 |
cgagcacttcaagaaggtggcttgtcttataataatttacttgctttgattgatgatcttaaaagaatgagagaca |
48967177 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 63; E-Value: 5e-27
Query Start/End: Original strand, 24 - 154
Target Start/End: Complemental strand, 48958028 - 48957898
Alignment:
| Q |
24 |
atagagaaggctatgaggagattgatggacggtggcgatgaagctgaatatatgagacaacgtgctcgagagttaggagagaaggctacacgagctgtta |
123 |
Q |
| |
|
||||| |||||| ||| |||||||||||||||||| ||||||||||| | || | ||| ||||||| |||||| ||||| |||||||||||||||||| |
|
|
| T |
48958028 |
atagaaaaggctgtgaagagattgatggacggtggtgatgaagctgaggaaatcaaacagcgtgctcaagagttcggagaaaaggctacacgagctgttc |
48957929 |
T |
|
| Q |
124 |
aagaaggtggttcctctcataataatttgtt |
154 |
Q |
| |
|
|||||||||| || |||||||| |||||||| |
|
|
| T |
48957928 |
aagaaggtggatcatctcataacaatttgtt |
48957898 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 38; E-Value: 0.000000000005
Query Start/End: Original strand, 18 - 143
Target Start/End: Original strand, 48912634 - 48912759
Alignment:
| Q |
18 |
gataacatagagaaggctatgaggagattgatggacggtggcgatgaagctgaatatatgagacaacgtgctcgagagttaggagagaaggctacacgag |
117 |
Q |
| |
|
||||| || ||||||| | ||| | ||||||||||| |||| ||||||||||| | || ||||||| |||||||||||| || ||||| |||| || | |
|
|
| T |
48912634 |
gataatattgagaaggttgtgaagcgattgatggacagtggtgatgaagctgagaaaatcagacaacatgctcgagagtttggggagaaagctaaacatg |
48912733 |
T |
|
| Q |
118 |
ctgttaaagaaggtggttcctctcat |
143 |
Q |
| |
|
| |||||||||||||||| |||||| |
|
|
| T |
48912734 |
caattaaagaaggtggttcatctcat |
48912759 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 64; Significance: 1e-27; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 64; E-Value: 1e-27
Query Start/End: Original strand, 24 - 207
Target Start/End: Original strand, 12641776 - 12641959
Alignment:
| Q |
24 |
atagagaaggctatgaggagattgatggacggtggcgatgaagctgaatatatgagacaacgtgctcgagagttaggagagaaggctacacgagctgtta |
123 |
Q |
| |
|
|||||||| ||| |||||||||||||||||| ||| ||||||||| | | || ||||||||||||| |||||| || | |||||||||| |||||| |
|
|
| T |
12641776 |
atagagaaagctgtgaggagattgatggacgatggtgatgaagctaaggaaatcagacaacgtgctcaagagtttgggaaaaaggctacacatgctgttg |
12641875 |
T |
|
| Q |
124 |
aagaaggtggttcctctcataataatttgttagctttaatcgacgaacttaaaagattgagagacagcaaaccacatgattaat |
207 |
Q |
| |
|
||||||| || || |||||||| |||||||| ||||| || |||| |||||||||| ||||||| ||||||||| ||| |||| |
|
|
| T |
12641876 |
aagaaggcgggtcgtctcataacaatttgttggctttgattaacgatcttaaaagatcgagagaccgcaaaccacttgaataat |
12641959 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 41; Significance: 0.00000000000007; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 41; E-Value: 0.00000000000007
Query Start/End: Original strand, 15 - 155
Target Start/End: Original strand, 12590455 - 12590595
Alignment:
| Q |
15 |
agagataacatagagaaggctatgaggagattgatggacggtggcgatgaagctgaatatatgagacaacgtgctcgagagttaggagagaaggctacac |
114 |
Q |
| |
|
||||||| |||| |||| ||| |||| ||||||||||| |||||| ||||||||| | || |||| |||| || ||||||||| || || |||| || |
|
|
| T |
12590455 |
agagatagcataaagaatgctgtgagaagattgatggatggtggcattgaagctgaggaaatcagacgacgtagtcaagagttaggggaaaaagctagac |
12590554 |
T |
|
| Q |
115 |
gagctgttaaagaaggtggttcctctcataataatttgtta |
155 |
Q |
| |
|
||||||| || ||||||| |||||| |||||||||||||| |
|
|
| T |
12590555 |
tagctgttcaacaaggtggctcctctaataataatttgtta |
12590595 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 32; Significance: 0.00000002; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 484 - 535
Target Start/End: Original strand, 42493446 - 42493497
Alignment:
| Q |
484 |
tggtactactctttatctggtgtcaaggttcttggttctgtttcaggtttaa |
535 |
Q |
| |
|
||||||| |||||||||||||||||| |||||||||||| || || |||||| |
|
|
| T |
42493446 |
tggtactgctctttatctggtgtcaacgttcttggttctattccatgtttaa |
42493497 |
T |
|
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