View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16676_low_30 (Length: 292)
Name: NF16676_low_30
Description: NF16676
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16676_low_30 |
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Alignment Details
Target: chr8 (Bit Score: 193; Significance: 1e-105; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 193; E-Value: 1e-105
Query Start/End: Original strand, 1 - 279
Target Start/End: Original strand, 418022 - 418288
Alignment:
| Q |
1 |
acaatgataaaagtgttataaaagaaacacttaaaaaggcaattggtgttgtgtgtgtaaacgcgttacatcaacannnnnnnnnnnnnnccactcccac |
100 |
Q |
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| T |
418022 |
acaatgataaaagtgttataaa-gaaacacttaaaaaggcaattggtgttgtgtgtgtaaacgcgttacatcaacatctctctct------ctctcccac |
418114 |
T |
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| Q |
101 |
tcaaggtcatgactcgatgaccatccaggttcccaccaaacactcttgttgagtatgagaaattagagaaagagaccccatgcaatcaaatgccataaaa |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
418115 |
tcaaggtcatgactcgatgaccatccaggttcccaccaaacactcttgttgagtatgagaaattagagaaagagaccccatgcaatcaaatgccat---- |
418210 |
T |
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| Q |
201 |
caaaacacaataaaaacatgatgctcccactattttaaattaagtgtaattgtataacatatatatagatttatttttg |
279 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |
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| T |
418211 |
-aaaacacaataaaaacatgatgctcccactattttaaattaagtataattgtataacatatatatagatttatttttg |
418288 |
T |
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