View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16676_low_39 (Length: 256)
Name: NF16676_low_39
Description: NF16676
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16676_low_39 |
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Alignment Details
Target: chr4 (Bit Score: 174; Significance: 1e-93; HSPs: 5)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 174; E-Value: 1e-93
Query Start/End: Original strand, 1 - 186
Target Start/End: Complemental strand, 35044156 - 35043971
Alignment:
| Q |
1 |
gtttacggtgaagcattgtttcgccatttcacaactgcttataactagtgttttgtgaacaccaaaacgaaaggtgaagataggtccgtatttatcggct |
100 |
Q |
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|||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
35044156 |
gtttacagtgaagcattgtttcgccatttcacaactgcttataactagtgttttgtgaacaccaaaacgaaaggtgaagataggtccgtatttatcggct |
35044057 |
T |
|
| Q |
101 |
agcttccctaaggtgacatgaggtggctcggatccacctaagaggtggaggtggccgatcaaaggccaagctccactggcttctgg |
186 |
Q |
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| T |
35044056 |
agcttccctaaggtgacatgaggtggctgggatccacctaagaggtggaggtggccgatcaaaggccaagctccaccggcttctgg |
35043971 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 87; E-Value: 8e-42
Query Start/End: Original strand, 2 - 204
Target Start/End: Complemental strand, 35029887 - 35029678
Alignment:
| Q |
2 |
tttacggtgaagcattgtttcgccatttcacaactgcttataactagtgttttgtgaacaccaaaacgaaaggtgaag-ataggtccgtatttatcggct |
100 |
Q |
| |
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||||||||||| ||||||||| |||||||| ||||||||| ||||| |||||||||||||| ||||||| ||||||| || ||||||||||| |||||| |
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| T |
35029887 |
tttacggtgaaacattgtttcaccatttcataactgcttacaactaaggttttgtgaacacctaaacgaacggtgaaggatgggtccgtatttgtcggct |
35029788 |
T |
|
| Q |
101 |
agcttccctaaggtgacatgaggtggctcggatccacctaagaggtggaggtggccgatcaaaggccaagctccactggcttct------ggtggtggtg |
194 |
Q |
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| || |||||||| || |||||||| | ||| ||||||||||||||||||||||| || || ||||| ||||| ||||||||| |||||||||| |
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| T |
35029787 |
aagtttcctaaggtaacgtgaggtggttgggacccacctaagaggtggaggtggccaattaacggccatgctccgctggcttctggcggcggtggtggtg |
35029688 |
T |
|
| Q |
195 |
tctttgaagc |
204 |
Q |
| |
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|||||||||| |
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| T |
35029687 |
tctttgaagc |
35029678 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 84; E-Value: 5e-40
Query Start/End: Original strand, 1 - 206
Target Start/End: Complemental strand, 35019796 - 35019594
Alignment:
| Q |
1 |
gtttacggtgaagcattgtttcgccatttcacaactgcttataactagtgttttgtgaacaccaaaacgaaaggtgaagataggtccgtatttatcggct |
100 |
Q |
| |
|
||||||||| || || |||||| |||||||| ||||||||| |||| |||||||||||||| ||||||| ||||||||| ||||||||||| |||||| |
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| T |
35019796 |
gtttacggtaaaacactgtttcaccatttcataactgcttactactaaggttttgtgaacacctaaacgaacggtgaagatgggtccgtatttgtcggct |
35019697 |
T |
|
| Q |
101 |
agcttccctaaggtgacatgaggtggctcggatccacctaagaggtggaggtggccgatcaaaggccaagctccactggcttctggtggtggtgtctttg |
200 |
Q |
| |
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| || ||||||||||| |||||||| | ||| |||||||||||||||||||||||||| || ||||| | ||| | |||||| ||||||||||||| |
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| T |
35019696 |
aagtttcctaaggtgacgtgaggtggttgggaaccacctaagaggtggaggtggccgattaacggccatgatccgccggcttc---cggtggtgtctttg |
35019600 |
T |
|
| Q |
201 |
aagcta |
206 |
Q |
| |
|
|||||| |
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|
| T |
35019599 |
aagcta |
35019594 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 56 - 205
Target Start/End: Complemental strand, 35035940 - 35035791
Alignment:
| Q |
56 |
tgaacaccaaaacgaaaggtgaagataggtccgtatttatcggctagcttccctaaggtgacatgaggtggctcggatccacctaagaggtggaggtggc |
155 |
Q |
| |
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|||||||| ||||| | |||||||| | ||||||||| ||||||| || || ||||||| || |||| | | ||| |||||||||||||||||||||| |
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| T |
35035940 |
tgaacacctaaacgcactgtgaagatggctccgtatttgtcggctaagtttcccaaggtgatataaggttgttgggaaccacctaagaggtggaggtggc |
35035841 |
T |
|
| Q |
156 |
cgatcaaaggccaagctccactggcttctggtggtggtgtctttgaagct |
205 |
Q |
| |
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|||| ||||||||||| ||| ||||| |||||||||||| |||||||| |
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|
| T |
35035840 |
cgattaaaggccaagcgccagcagcttcgggtggtggtgtcattgaagct |
35035791 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 202 - 235
Target Start/End: Complemental strand, 35043970 - 35043937
Alignment:
| Q |
202 |
agctacactagtattaatgcggcggcttctcagt |
235 |
Q |
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|||||||||||||||||||||||||||||||||| |
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| T |
35043970 |
agctacactagtattaatgcggcggcttctcagt |
35043937 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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