View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16676_low_43 (Length: 241)
Name: NF16676_low_43
Description: NF16676
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16676_low_43 |
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Alignment Details
Target: chr5 (Bit Score: 205; Significance: 1e-112; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 205; E-Value: 1e-112
Query Start/End: Original strand, 1 - 221
Target Start/End: Complemental strand, 13333843 - 13333623
Alignment:
| Q |
1 |
ttacctgcgatttgaggatcccattcatttctaaaactatcaaactcaaccgcaacaatcaagttttgcgaggtattgaaggcggattctttatcgaaaa |
100 |
Q |
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| T |
13333843 |
ttacctgcgatttgaggatcccattcatttctaaaactatcaaactcaaccgcaacaatggagttttgggaggtattgaacgcggattctttatcgaaaa |
13333744 |
T |
|
| Q |
101 |
gtccaaggaatccaccatcggatgatttctctgggaactcataatctaacgatgcgataaagaatgtgaaaccgtcaccatgaagttgtgaaccttttgg |
200 |
Q |
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| T |
13333743 |
gtccaaggaatccaccatcggatgatttctctgggaactcataatctaacgatgcgataaagaatgtgaaaccgtcaccatgaagttgtgaaccttttgg |
13333644 |
T |
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| Q |
201 |
attcacaacaaaggaaaactc |
221 |
Q |
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| T |
13333643 |
attcacaacaaaggaaaactc |
13333623 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 103; E-Value: 2e-51
Query Start/End: Original strand, 19 - 221
Target Start/End: Complemental strand, 13308669 - 13308467
Alignment:
| Q |
19 |
tcccattcatttctaaaactatcaaactcaaccgcaacaatcaagttttgcgaggtattgaaggcggattctttatcgaaaagtccaaggaatccaccat |
118 |
Q |
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| T |
13308669 |
tcccattcatttgcaaaactatcaaactcgacggcaacgattgagtttttggaggtattgaaggcagtttctttatcaaaaagtccaaggaatccaccat |
13308570 |
T |
|
| Q |
119 |
cggatgatttctctgggaactcataatctaacgatgcgataaagaatgtgaaaccgtcaccatgaagttgtgaaccttttggattcacaacaaaggaaaa |
218 |
Q |
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| T |
13308569 |
ccgatgatttttcgggaaaatcataatctaatgatgctatatagaatgcgaaaccatctccgtgaagttgtgaaccctttggattcacaacaaaggaaaa |
13308470 |
T |
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| Q |
219 |
ctc |
221 |
Q |
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||| |
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| T |
13308469 |
ctc |
13308467 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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