View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16676_low_44 (Length: 239)
Name: NF16676_low_44
Description: NF16676
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16676_low_44 |
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Alignment Details
Target: chr6 (Bit Score: 170; Significance: 2e-91; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 170; E-Value: 2e-91
Query Start/End: Original strand, 18 - 229
Target Start/End: Complemental strand, 7421398 - 7421186
Alignment:
| Q |
18 |
tttatattatgatcatatttcttttcctactttatgtcgtaaatggaactcgatgtaatagagatgaagactgcccatttatttgtaccggacctcagct |
117 |
Q |
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| T |
7421398 |
tttatattatgatcatatttcttttcctactttatgtcgtaaatggaactcgatgtaatagagatgaagactgcccatttatttgtaccggacctcagat |
7421299 |
T |
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| Q |
118 |
tccgaagtgtgtttcacatatttgcttctgtcttagcagttaag-nnnnnnnnncaaccaatttagttacttctaaacttataattttatttcaaaatat |
216 |
Q |
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| T |
7421298 |
tccgaagtgtgtttcacatatttgcttctgtcttagcagttaagttttttttttcaaccaatttagttacttctaaacttataattttatttcaaaatat |
7421199 |
T |
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| Q |
217 |
tcttacacctatg |
229 |
Q |
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|||||||| |||| |
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| T |
7421198 |
tcttacacttatg |
7421186 |
T |
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