View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF16676_low_45 (Length: 237)

Name: NF16676_low_45
Description: NF16676
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF16676_low_45
NF16676_low_45
[»] chr1 (11 HSPs)
chr1 (1-222)||(51756723-51756943)
chr1 (11-216)||(51858474-51858678)
chr1 (11-216)||(51854815-51855019)
chr1 (11-219)||(51762908-51763113)
chr1 (135-206)||(51782790-51782861)
chr1 (150-208)||(51407546-51407604)
chr1 (83-206)||(51381444-51381566)
chr1 (133-218)||(51832362-51832447)
chr1 (129-218)||(51221193-51221282)
chr1 (133-194)||(51829766-51829827)
chr1 (88-116)||(51832312-51832340)
[»] chr6 (5 HSPs)
chr6 (11-218)||(4743822-4744028)
chr6 (11-218)||(4182978-4183184)
chr6 (146-196)||(19119065-19119115)
chr6 (146-196)||(19126359-19126409)
chr6 (145-195)||(24417486-24417536)
[»] chr3 (15 HSPs)
chr3 (146-196)||(23197014-23197064)
chr3 (145-206)||(2492083-2492144)
chr3 (145-206)||(2631358-2631419)
chr3 (137-206)||(7442966-7443035)
chr3 (137-206)||(43991953-43992022)
chr3 (137-193)||(9608346-9608402)
chr3 (143-221)||(1891038-1891116)
chr3 (142-196)||(3754598-3754652)
chr3 (143-196)||(2696731-2696784)
chr3 (143-196)||(4142133-4142186)
chr3 (143-196)||(4157943-4157996)
chr3 (143-196)||(7432053-7432106)
chr3 (144-193)||(13498224-13498273)
chr3 (144-220)||(783774-783850)
chr3 (144-196)||(2442039-2442091)
[»] chr2 (3 HSPs)
chr2 (137-172)||(33038153-33038188)
chr2 (138-206)||(11237687-11237755)
chr2 (144-196)||(36577366-36577418)
[»] scaffold0044 (1 HSPs)
scaffold0044 (138-195)||(89137-89194)
[»] chr5 (2 HSPs)
chr5 (143-196)||(23766861-23766914)
chr5 (143-196)||(23816709-23816762)
[»] chr4 (2 HSPs)
chr4 (143-196)||(20019771-20019824)
chr4 (148-196)||(20016184-20016232)


Alignment Details
Target: chr1 (Bit Score: 192; Significance: 1e-104; HSPs: 11)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 192; E-Value: 1e-104
Query Start/End: Original strand, 1 - 222
Target Start/End: Complemental strand, 51756943 - 51756723
Alignment:
Q  1 tatcatagtatctcttgatttggagaaggagttgtctcaagagcttttgcaccctctttgtgataaccaacaagaaaattacattatcttgggggtgttg 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  51756943 tatcatagtatctcttgatttggagaaggagttgtctcaagagcttttgcaccctctttgtgataaccaacaagaaaattacattatcttgggggtgttg 51756844  T
Q  101 agggattgtttgtgcannnnnnnctcaaagtgacaagttttttgatgtttggatcatgaaggaatatggaaatggacaatcttggactaaattgttaagt 200  Q
    ||||||||||||||||       |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  51756843 agggattgtttgtgca-ttttttctcaaagtgacaagttttttgatgtttggatcatgaaggaatatggaaatggacaatcttggactaaattgttaagt 51756745  T
Q  201 gttcctcagatgggagatcatt 222  Q
    |||||||| |||||||||||||    
T  51756744 gttcctcaaatgggagatcatt 51756723  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 96; E-Value: 3e-47
Query Start/End: Original strand, 11 - 216
Target Start/End: Original strand, 51858474 - 51858678
Alignment:
Q  11 tctcttgatttggagaaggagttgtctcaagagcttttgcaccctctttgtgataaccaacaagaaaattacattatcttgggggtgttgagggattgtt 110  Q
    ||||||||||||||||| ||||||| |||||||||||| |||||||||| | || || |||  | || || ||||  |||||||||| |||||||||| |    
T  51858474 tctcttgatttggagaatgagttgtgtcaagagctttttcaccctctttataattacaaacctggaacttgcattgccttgggggtgctgagggattgct 51858573  T
Q  111 tgtgcannnnnnnctcaaagtgacaagttttttgatgtttggatcatgaaggaatatggaaatggacaatcttggactaaattgttaagtgttcctcaga 210  Q
    ||||||       |||| ||||||||||||| |||||||||||||||||||||||||||||||| | ||||||||||||||||||||||||||||||| |    
T  51858574 tgtgcatttttt-ctcatagtgacaagttttctgatgtttggatcatgaaggaatatggaaatgtagaatcttggactaaattgttaagtgttcctcaaa 51858672  T
Q  211 tgggag 216  Q
    ||||||    
T  51858673 tgggag 51858678  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 76; E-Value: 3e-35
Query Start/End: Original strand, 11 - 216
Target Start/End: Original strand, 51854815 - 51855019
Alignment:
Q  11 tctcttgatttggagaaggagttgtctcaagagcttttgcaccctctttgtgataaccaacaagaaaattacattatcttgggggtgttgagggattgtt 110  Q
    ||||||||||||||||| | ||||| ||||||| |||  |||||||||| |||  || |||  | ||||  ||||| |||||||||||||||||||||||    
T  51854815 tctcttgatttggagaatgggttgtatcaagagttttctcaccctctttatgactacgaacctgcaaatcgcattaccttgggggtgttgagggattgtt 51854914  T
Q  111 tgtgcannnnnnnctcaaagtgacaagttttttgatgtttggatcatgaaggaatatggaaatggacaatcttggactaaattgttaagtgttcctcaga 210  Q
    ||||||       ||   ||||| ||||||| |||||||||||||||||| ||||||||||||| | |||||||||||||||||||| |||||||||| |    
T  51854915 tgtgcacttttt-ctagtagtgagaagttttctgatgtttggatcatgaaagaatatggaaatgtagaatcttggactaaattgttatgtgttcctcaaa 51855013  T
Q  211 tgggag 216  Q
    ||||||    
T  51855014 tgggag 51855019  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 74; E-Value: 4e-34
Query Start/End: Original strand, 11 - 219
Target Start/End: Complemental strand, 51763113 - 51762908
Alignment:
Q  11 tctcttgatttggagaaggagttgtctcaagagcttttgcaccctctttgtgataaccaacaagaaaattacattatcttgggggtgttgagggattgtt 110  Q
    ||||||| ||||||||| ||||||| |||||||||||  ||||||| || |||| ||||||  | ||||  ||| ||     ||||||||||||||||||    
T  51763113 tctcttggtttggagaatgagttgtatcaagagctttctcaccctcattatgattaccaacctggaaatggcataatta---gggtgttgagggattgtt 51763017  T
Q  111 tgtgcannnnnnnctcaaagtgacaagttttttgatgtttggatcatgaaggaatatggaaatggacaatcttggactaaattgttaagtgttcctcaga 210  Q
    ||||||       || | |||||||  |||| | || ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |    
T  51763016 tgtgcatttttttctaatagtgacagcttttcttatttttggatcatgaaggaatatggaaatggacaatcttggactaaattgttaagtgttcctcaaa 51762917  T
Q  211 tgggagatc 219  Q
    | |||||||    
T  51762916 taggagatc 51762908  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 135 - 206
Target Start/End: Original strand, 51782790 - 51782861
Alignment:
Q  135 aagttttttgatgtttggatcatgaaggaatatggaaatggacaatcttggactaaattgttaagtgttcct 206  Q
    ||||||| |||||||||||| ||||||||||||||||||| ||||||||||| |||||| ||||||||||||    
T  51782790 aagttttatgatgtttggattatgaaggaatatggaaatgaacaatcttggaataaattattaagtgttcct 51782861  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 150 - 208
Target Start/End: Complemental strand, 51407604 - 51407546
Alignment:
Q  150 tggatcatgaaggaatatggaaatggacaatcttggactaaattgttaagtgttcctca 208  Q
    ||||| |||||||||||||| |||| ||| |||||||||||||||||||||||||||||    
T  51407604 tggattatgaaggaatatgggaatgaacagtcttggactaaattgttaagtgttcctca 51407546  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 83 - 206
Target Start/End: Complemental strand, 51381566 - 51381444
Alignment:
Q  83 attatcttgggggtgttgagggattgtttgtgcannnnnnnctcaaagtgacaagttttttgatgtttggatcatgaaggaatatggaaatggacaatct 182  Q
    |||| ||||| |||||||||||||||||||||||       ||||  | |||||||||| |||| ||||||| ||||| ||||||||||||| | | |||    
T  51381566 attaccttggaggtgttgagggattgtttgtgcatccttt-ctcatggcgacaagttttctgatatttggattatgaaagaatatggaaatgaagagtct 51381468  T
Q  183 tggactaaattgttaagtgttcct 206  Q
    |||||||||||||| ||| |||||    
T  51381467 tggactaaattgttcagtattcct 51381444  T

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Target: chr1; HSP #8
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 133 - 218
Target Start/End: Original strand, 51832362 - 51832447
Alignment:
Q  133 acaagttttttgatgtttggatcatgaaggaatatggaaatggacaatcttggactaaattgttaagtgttcctcagatgggagat 218  Q
    |||||||||  ||| ||||||| ||||| ||||||||||||| ||||||||||||||||||||| ||  ||||||| |||| ||||    
T  51832362 acaagttttccgatatttggataatgaaagaatatggaaatgaacaatcttggactaaattgttgagcattcctcatatggaagat 51832447  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 129 - 218
Target Start/End: Complemental strand, 51221282 - 51221193
Alignment:
Q  129 agtgacaagttttttgatgtttggatcatgaaggaatatggaaatggacaatcttggactaaattgttaagtgttcctcagatgggagat 218  Q
    ||||||| ||||| |||||||||||| ||||| ||||| || |||| | | |||||||||| ||||||| | |||||||| ||| |||||    
T  51221282 agtgacatgttttctgatgtttggataatgaatgaatacgggaatgaaaattcttggactatattgttacgggttcctcacatgagagat 51221193  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 133 - 194
Target Start/End: Original strand, 51829766 - 51829827
Alignment:
Q  133 acaagttttttgatgtttggatcatgaaggaatatggaaatggacaatcttggactaaattg 194  Q
    |||| ||||| ||||||||||| ||||| |||||||||||||  |||||||||| |||||||    
T  51829766 acaactttttcgatgtttggataatgaaagaatatggaaatgaccaatcttggattaaattg 51829827  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 88 - 116
Target Start/End: Original strand, 51832312 - 51832340
Alignment:
Q  88 cttgggggtgttgagggattgtttgtgca 116  Q
    |||||||||||||||||||||||||||||    
T  51832312 cttgggggtgttgagggattgtttgtgca 51832340  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 106; Significance: 4e-53; HSPs: 5)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 106; E-Value: 4e-53
Query Start/End: Original strand, 11 - 218
Target Start/End: Complemental strand, 4744028 - 4743822
Alignment:
Q  11 tctcttgatttggagaaggagttgtctcaagagcttttgcaccctctttgtgataaccaacaagaaaattacattatcttgggggtgttgagggattgtt 110  Q
    |||||| ||||| |||||||||  | ||||||| |||  |||||||||| ||||| ||||   |||| ||||| || |||||||||||||||||||||||    
T  4744028 tctcttcatttgcagaaggagtcttatcaagagttttctcaccctctttatgatatccaatctgaaacttacaataccttgggggtgttgagggattgtt 4743929  T
Q  111 tgtgcannnnnnnctcaaagtgacaagttttttgatgtttggatcatgaaggaatatggaaatggacaatcttggactaaattgttaagtgttcctcaga 210  Q
    ||||||       || | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |    
T  4743928 tgtgcatttttt-ctaatagtgacaagttttttgatgtttggatcatgaaggaatatggaaatggacaatcttggactaaattgttaagtgttcctcaaa 4743830  T
Q  211 tgggagat 218  Q
    ||||||||    
T  4743829 tgggagat 4743822  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 102; E-Value: 9e-51
Query Start/End: Original strand, 11 - 218
Target Start/End: Complemental strand, 4183184 - 4182978
Alignment:
Q  11 tctcttgatttggagaaggagttgtctcaagagcttttgcaccctctttgtgataaccaacaagaaaattacattatcttgggggtgttgagggattgtt 110  Q
    |||||| ||||| |||||||||  | |||||||||||  |||||||||| ||||| ||||   |||| | ||| || ||||||| |||||||||||||||    
T  4183184 tctcttcatttgcagaaggagtcttatcaagagctttctcaccctctttatgatatccaatctgaaactgacaataccttggggatgttgagggattgtt 4183085  T
Q  111 tgtgcannnnnnnctcaaagtgacaagttttttgatgtttggatcatgaaggaatatggaaatggacaatcttggactaaattgttaagtgttcctcaga 210  Q
    ||||||       || | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |    
T  4183084 tgtgcatttttt-ctaatagtgacaagttttttgatgtttggatcatgaaggaatatggaaatggacaatcttggactaaattgttaagtgttcctcaaa 4182986  T
Q  211 tgggagat 218  Q
    ||||||||    
T  4182985 tgggagat 4182978  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 146 - 196
Target Start/End: Original strand, 19119065 - 19119115
Alignment:
Q  146 tgtttggatcatgaaggaatatggaaatggacaatcttggactaaattgtt 196  Q
    ||||||| | ||||||||||||||||||| | | |||||||||||||||||    
T  19119065 tgtttggttgatgaaggaatatggaaatgaagagtcttggactaaattgtt 19119115  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 146 - 196
Target Start/End: Original strand, 19126359 - 19126409
Alignment:
Q  146 tgtttggatcatgaaggaatatggaaatggacaatcttggactaaattgtt 196  Q
    ||||||| | ||||||||||||||||||| | | |||||||||||||||||    
T  19126359 tgtttggttgatgaaggaatatggaaatgaagagtcttggactaaattgtt 19126409  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 145 - 195
Target Start/End: Complemental strand, 24417536 - 24417486
Alignment:
Q  145 atgtttggatcatgaaggaatatggaaatggacaatcttggactaaattgt 195  Q
    |||||||||| ||||| ||||||||||||  | ||||||||||||||||||    
T  24417536 atgtttggattatgaaagaatatggaaataaagaatcttggactaaattgt 24417486  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 35; Significance: 0.00000000008; HSPs: 15)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 146 - 196
Target Start/End: Original strand, 23197014 - 23197064
Alignment:
Q  146 tgtttggatcatgaaggaatatggaaatggacaatcttggactaaattgtt 196  Q
    ||||||| | ||||||||||||||||||| | |||||||||||||||||||    
T  23197014 tgtttggctgatgaaggaatatggaaatgaagaatcttggactaaattgtt 23197064  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 145 - 206
Target Start/End: Original strand, 2492083 - 2492144
Alignment:
Q  145 atgtttggatcatgaaggaatatggaaatggacaatcttggactaaattgttaagtgttcct 206  Q
    |||||||||| |||||||| ||||||||| || | ||||||||||||||||  |||||||||    
T  2492083 atgtttggattatgaaggagtatggaaatcgagagtcttggactaaattgtatagtgttcct 2492144  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 145 - 206
Target Start/End: Original strand, 2631358 - 2631419
Alignment:
Q  145 atgtttggatcatgaaggaatatggaaatggacaatcttggactaaattgttaagtgttcct 206  Q
    |||||||||| ||||||||||||||||||  | | ||||||||||||||||  |||||||||    
T  2631358 atgtttggattatgaaggaatatggaaatcaagagtcttggactaaattgtgcagtgttcct 2631419  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 137 - 206
Target Start/End: Complemental strand, 7443035 - 7442966
Alignment:
Q  137 gttttttgatgtttggatcatgaaggaatatggaaatggacaatcttggactaaattgttaagtgttcct 206  Q
    ||||||| ||||||||||||||||||| |||||||||  | | ||||||||||| ||||  |||||||||    
T  7443035 gttttttaatgtttggatcatgaaggagtatggaaatcaagagtcttggactaagttgtatagtgttcct 7442966  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 137 - 206
Target Start/End: Original strand, 43991953 - 43992022
Alignment:
Q  137 gttttttgatgtttggatcatgaaggaatatggaaatggacaatcttggactaaattgttaagtgttcct 206  Q
    |||||| ||||||||||| ||||||||||||||||||  | | |||||||| |||||||  |||||||||    
T  43991953 gtttttggatgtttggattatgaaggaatatggaaatatagagtcttggaccaaattgtatagtgttcct 43992022  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 137 - 193
Target Start/End: Complemental strand, 9608402 - 9608346
Alignment:
Q  137 gttttttgatgtttggatcatgaaggaatatggaaatggacaatcttggactaaatt 193  Q
    |||||||||||||||| | ||||||||||||||||||  | | ||||||||||||||    
T  9608402 gttttttgatgtttgggttatgaaggaatatggaaatatagattcttggactaaatt 9608346  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 143 - 221
Target Start/End: Complemental strand, 1891116 - 1891038
Alignment:
Q  143 tgatgtttggatcatgaaggaatatggaaatggacaatcttggactaaattgttaagtgttcctcagatgggagatcat 221  Q
    |||||||||||| ||||||||| ||||||||  | | ||||||||||||||||  |||||| || | ||| ||||||||    
T  1891116 tgatgtttggattatgaaggaacatggaaataaagactcttggactaaattgtatagtgtttcttacatgcgagatcat 1891038  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 142 - 196
Target Start/End: Original strand, 3754598 - 3754652
Alignment:
Q  142 ttgatgtttggatcatgaaggaatatggaaatggacaatcttggactaaattgtt 196  Q
    ||||||||||| | ||||||||||||||||||  | | |||||||||||||||||    
T  3754598 ttgatgtttgggttatgaaggaatatggaaataaagagtcttggactaaattgtt 3754652  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 143 - 196
Target Start/End: Complemental strand, 2696784 - 2696731
Alignment:
Q  143 tgatgtttggatcatgaaggaatatggaaatggacaatcttggactaaattgtt 196  Q
    |||||||||||| ||||||||||||||||||  | | ||||||| |||||||||    
T  2696784 tgatgtttggattatgaaggaatatggaaataaagagtcttggattaaattgtt 2696731  T

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Target: chr3; HSP #10
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 143 - 196
Target Start/End: Complemental strand, 4142186 - 4142133
Alignment:
Q  143 tgatgtttggatcatgaaggaatatggaaatggacaatcttggactaaattgtt 196  Q
    |||||||||| | ||||||||||||||||||  | | |||||||||||||||||    
T  4142186 tgatgtttggcttatgaaggaatatggaaataaagagtcttggactaaattgtt 4142133  T

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Target: chr3; HSP #11
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 143 - 196
Target Start/End: Complemental strand, 4157996 - 4157943
Alignment:
Q  143 tgatgtttggatcatgaaggaatatggaaatggacaatcttggactaaattgtt 196  Q
    |||||||||| | ||||||||||||||||||  | | |||||||||||||||||    
T  4157996 tgatgtttggcttatgaaggaatatggaaataaagagtcttggactaaattgtt 4157943  T

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Target: chr3; HSP #12
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 143 - 196
Target Start/End: Complemental strand, 7432106 - 7432053
Alignment:
Q  143 tgatgtttggatcatgaaggaatatggaaatggacaatcttggactaaattgtt 196  Q
    |||||||||||  ||||||||||||||||||  | |||| ||||||||||||||    
T  7432106 tgatgtttggagtatgaaggaatatggaaataaagaatcgtggactaaattgtt 7432053  T

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Target: chr3; HSP #13
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 144 - 193
Target Start/End: Original strand, 13498224 - 13498273
Alignment:
Q  144 gatgtttggatcatgaaggaatatggaaatggacaatcttggactaaatt 193  Q
    ||||||||||| ||||||||||||||||||  | | ||||||||||||||    
T  13498224 gatgtttggattatgaaggaatatggaaataaagagtcttggactaaatt 13498273  T

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Target: chr3; HSP #14
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 144 - 220
Target Start/End: Complemental strand, 783850 - 783774
Alignment:
Q  144 gatgtttggatcatgaaggaatatggaaatggacaatcttggactaaattgttaagtgttcctcagatgggagatca 220  Q
    ||||||||||| ||||||||||||||||||  | |  | |||||||||||||  | ||||||| | |||||||||||    
T  783850 gatgtttggattatgaaggaatatggaaatacaaagccatggactaaattgtatactgttccttacatgggagatca 783774  T

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Target: chr3; HSP #15
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 144 - 196
Target Start/End: Original strand, 2442039 - 2442091
Alignment:
Q  144 gatgtttggatcatgaaggaatatggaaatggacaatcttggactaaattgtt 196  Q
    ||||||||||| |||||||| |||||||||  | | |||||||||||||||||    
T  2442039 gatgtttggattatgaaggagtatggaaataaagattcttggactaaattgtt 2442091  T

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Target: chr2 (Bit Score: 32; Significance: 0.000000005; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 137 - 172
Target Start/End: Original strand, 33038153 - 33038188
Alignment:
Q  137 gttttttgatgtttggatcatgaaggaatatggaaa 172  Q
    |||||||||||||||||| |||||||||||||||||    
T  33038153 gttttttgatgtttggattatgaaggaatatggaaa 33038188  T

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Target: chr2; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 138 - 206
Target Start/End: Original strand, 11237687 - 11237755
Alignment:
Q  138 ttttttgatgtttggatcatgaaggaatatggaaatggacaatcttggactaaattgttaagtgttcct 206  Q
    ||||| ||||||||| | ||| |||| ||||||||| || || ||||||||||||||||  ||||||||    
T  11237687 tttttcgatgtttggcttatggaggagtatggaaatagagaaacttggactaaattgttccgtgttcct 11237755  T

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Target: chr2; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 144 - 196
Target Start/End: Original strand, 36577366 - 36577418
Alignment:
Q  144 gatgtttggatcatgaaggaatatggaaatggacaatcttggactaaattgtt 196  Q
    ||||||||||| ||||||||||||||||||  | | ||||||| |||||||||    
T  36577366 gatgtttggattatgaaggaatatggaaataaagagtcttggattaaattgtt 36577418  T

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Target: scaffold0044 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: scaffold0044
Description:

Target: scaffold0044; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 138 - 195
Target Start/End: Original strand, 89137 - 89194
Alignment:
Q  138 ttttttgatgtttggatcatgaaggaatatggaaatggacaatcttggactaaattgt 195  Q
    ||||||||| ||||| | ||||||||||||||||||  | | ||||||||||||||||    
T  89137 ttttttgatatttgggttatgaaggaatatggaaataaagagtcttggactaaattgt 89194  T

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Target: chr5 (Bit Score: 30; Significance: 0.00000008; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 143 - 196
Target Start/End: Complemental strand, 23766914 - 23766861
Alignment:
Q  143 tgatgtttggatcatgaaggaatatggaaatggacaatcttggactaaattgtt 196  Q
    |||||||||||| ||||| ||||||||||||  | | |||||||||||||||||    
T  23766914 tgatgtttggattatgaaagaatatggaaataaagagtcttggactaaattgtt 23766861  T

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Target: chr5; HSP #2
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 143 - 196
Target Start/End: Complemental strand, 23816762 - 23816709
Alignment:
Q  143 tgatgtttggatcatgaaggaatatggaaatggacaatcttggactaaattgtt 196  Q
    |||||||||||| ||||| ||||||||||||  | | |||||||||||||||||    
T  23816762 tgatgtttggattatgaaagaatatggaaataaagagtcttggactaaattgtt 23816709  T

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Target: chr4 (Bit Score: 30; Significance: 0.00000008; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 143 - 196
Target Start/End: Complemental strand, 20019824 - 20019771
Alignment:
Q  143 tgatgtttggatcatgaaggaatatggaaatggacaatcttggactaaattgtt 196  Q
    |||||||||| |||||||||||||||||| |  | | |||||||||||||||||    
T  20019824 tgatgtttgggtcatgaaggaatatggaattcaagagtcttggactaaattgtt 20019771  T

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Target: chr4; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 148 - 196
Target Start/End: Complemental strand, 20016232 - 20016184
Alignment:
Q  148 tttggatcatgaaggaatatggaaatggacaatcttggactaaattgtt 196  Q
    |||||||||||||||||||||||| |  | | |||||||||||||||||    
T  20016232 tttggatcatgaaggaatatggaattcaagagtcttggactaaattgtt 20016184  T

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