View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF16676_low_46 (Length: 232)

Name: NF16676_low_46
Description: NF16676
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF16676_low_46
NF16676_low_46
[»] chr6 (4 HSPs)
chr6 (5-206)||(34244647-34244844)
chr6 (38-203)||(13214011-13214179)
chr6 (86-219)||(30579983-30580111)
chr6 (38-73)||(30580103-30580138)
[»] chr4 (5 HSPs)
chr4 (38-219)||(15041630-15041807)
chr4 (38-219)||(15112617-15112794)
chr4 (38-218)||(15039902-15040078)
chr4 (38-218)||(15114346-15114522)
chr4 (38-219)||(16003450-16003626)
[»] chr7 (3 HSPs)
chr7 (38-212)||(10867934-10868104)
chr7 (38-219)||(10866217-10866394)
chr7 (38-219)||(20186072-20186233)
[»] chr3 (6 HSPs)
chr3 (38-201)||(34142934-34143093)
chr3 (38-137)||(27634221-27634320)
chr3 (38-137)||(34519038-34519137)
chr3 (44-213)||(19844732-19844896)
chr3 (72-152)||(8584406-8584486)
chr3 (190-219)||(8584492-8584521)
[»] chr8 (2 HSPs)
chr8 (65-214)||(30187753-30187898)
chr8 (172-213)||(22692478-22692519)
[»] scaffold0275 (1 HSPs)
scaffold0275 (37-143)||(3962-4068)
[»] chr5 (1 HSPs)
chr5 (43-218)||(33566762-33566933)
[»] chr1 (1 HSPs)
chr1 (149-212)||(17309792-17309854)


Alignment Details
Target: chr6 (Bit Score: 185; Significance: 1e-100; HSPs: 4)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 185; E-Value: 1e-100
Query Start/End: Original strand, 5 - 206
Target Start/End: Original strand, 34244647 - 34244844
Alignment:
5 tatcctcatggagttttgcttgtttgtggattgtgttgagataactagaattagttaaggtagttagagttggttaaatgttagttagagagaactatag 104  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
34244647 tatcctcatggagttttgcttgtttgtggattgtgttgagataactagaattagttaaggtagttagagttggttaaatgttagttagagagaactatag 34244746  T
105 ttagttacaagtagttaaggtcattgaggtctataaaaggaccaaccaaccatatactcattcatataatctttttcaatacaattcataatgaattcta 204  Q
    ||||||||||||||||||||||||||||||||||||||||    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
34244747 ttagttacaagtagttaaggtcattgaggtctataaaagg----accaaccatatactcattcatataatctttttcaatacaattcataatgaattcta 34244842  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 72; E-Value: 7e-33
Query Start/End: Original strand, 38 - 203
Target Start/End: Complemental strand, 13214179 - 13214011
Alignment:
38 tgttgagataactagaattagttaaggtagttagagttggttaaatgttagttagagagaactatagttagttacaagtagttaaggtcattgagg---- 133  Q
    |||||||||||||||| ||||||||||||||||| ||||||||||| |||||| ||||||||||||||||||||||||| |||| ||| ||||| |        
13214179 tgttgagataactagagttagttaaggtagttagggttggttaaattttagttcgagagaactatagttagttacaagtggttagggtaattgaagtcta 13214080  T
134 ----tctataaaaggaccaaccaaccatatactcattcatataatctttttcaatacaattcataatgaattct 203  Q
        |||||||||||    ||||||||| |||| ||||||  ||||||||| ||||||||||||||||||||||    
13214079 tatttctataaaagg----accaaccatgtacttattcat-caatcttttttaatacaattcataatgaattct 13214011  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 69; E-Value: 4e-31
Query Start/End: Original strand, 86 - 219
Target Start/End: Complemental strand, 30580111 - 30579983
Alignment:
86 tagttagagagaactatagttagttacaagtagttaaggtcattgaggtctataaaaggaccaaccaaccatatactcattcatataatctttttcaata 185  Q
    |||||||||||||||||||||||||||||||||||| ||| |||||||||||||| | |    | |||||||  ||||||||||  ||||||||||| ||    
30580111 tagttagagagaactatagttagttacaagtagttagggtaattgaggtctataatatg----atcaaccatgaactcattcat-caatctttttcatta 30580017  T
186 caattcataatgaattctaagggttttccctatg 219  Q
    |||||||||||||||||||||||||||| |||||    
30580016 caattcataatgaattctaagggttttctctatg 30579983  T

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Target: chr6; HSP #4
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 38 - 73
Target Start/End: Complemental strand, 30580138 - 30580103
Alignment:
38 tgttgagataactagaattagttaaggtagttagag 73  Q
    |||||||||||||||| |||||||||||||||||||    
30580138 tgttgagataactagagttagttaaggtagttagag 30580103  T

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Target: chr4 (Bit Score: 137; Significance: 1e-71; HSPs: 5)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 137; E-Value: 1e-71
Query Start/End: Original strand, 38 - 219
Target Start/End: Complemental strand, 15041807 - 15041630
Alignment:
38 tgttgagataactagaattagttaaggtagttagagttggttaaatgttagttagagagaactatagttagttacaagtagttaaggtcattgaggtcta 137  Q
    |||||||||||||||| |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||    
15041807 tgttgagataactagagttagttaaggtagttagagttgattaaatgttagttagagagaactatagttagttacaagtagttagggtcattgaggtcta 15041708  T
138 taaaaggaccaaccaaccatatactcattcatataatctttttcaatacaattcataatgaattctaagggttttccctatg 219  Q
    |||||||||||    ||||| ||||||||||| ||||||||||||||||||||||  |||||||||||||||||||||||||    
15041707 taaaaggacca----accatgtactcattcatgtaatctttttcaatacaattcaatatgaattctaagggttttccctatg 15041630  T

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Target: chr4; HSP #2
Raw Score: 137; E-Value: 1e-71
Query Start/End: Original strand, 38 - 219
Target Start/End: Original strand, 15112617 - 15112794
Alignment:
38 tgttgagataactagaattagttaaggtagttagagttggttaaatgttagttagagagaactatagttagttacaagtagttaaggtcattgaggtcta 137  Q
    |||||||||||||||| |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||    
15112617 tgttgagataactagagttagttaaggtagttagagttgattaaatgttagttagagagaactatagttagttacaagtagttagggtcattgaggtcta 15112716  T
138 taaaaggaccaaccaaccatatactcattcatataatctttttcaatacaattcataatgaattctaagggttttccctatg 219  Q
    |||||||    ||||||||| ||||||||||| ||||||||||||||||||||||  |||||||||||||||||||||||||    
15112717 taaaagg----accaaccatgtactcattcatgtaatctttttcaatacaattcaatatgaattctaagggttttccctatg 15112794  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 132; E-Value: 1e-68
Query Start/End: Original strand, 38 - 218
Target Start/End: Complemental strand, 15040078 - 15039902
Alignment:
38 tgttgagataactagaattagttaaggtagttagagttggttaaatgttagttagagagaactatagttagttacaagtagttaaggtcattgaggtcta 137  Q
    |||||||||||||||| |||||||||||||||||||||| |||||||||||||||||||||| ||||||||||||||||||||| |||||||||||||||    
15040078 tgttgagataactagagttagttaaggtagttagagttgattaaatgttagttagagagaacaatagttagttacaagtagttagggtcattgaggtcta 15039979  T
138 taaaaggaccaaccaaccatatactcattcatataatctttttcaatacaattcataatgaattctaagggttttccctat 218  Q
    |||||||||||    ||||| ||||||||||| ||||||||||||||||||||||  ||||||||||||||||||||||||    
15039978 taaaaggacca----accatgtactcattcatgtaatctttttcaatacaattcactatgaattctaagggttttccctat 15039902  T

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Target: chr4; HSP #4
Raw Score: 132; E-Value: 1e-68
Query Start/End: Original strand, 38 - 218
Target Start/End: Original strand, 15114346 - 15114522
Alignment:
38 tgttgagataactagaattagttaaggtagttagagttggttaaatgttagttagagagaactatagttagttacaagtagttaaggtcattgaggtcta 137  Q
    |||||||||||||||| |||||||||||||||||||||| |||||||||||||||||||||| ||||||||||||||||||||| |||||||||||||||    
15114346 tgttgagataactagagttagttaaggtagttagagttgattaaatgttagttagagagaacaatagttagttacaagtagttagggtcattgaggtcta 15114445  T
138 taaaaggaccaaccaaccatatactcattcatataatctttttcaatacaattcataatgaattctaagggttttccctat 218  Q
    |||||||    ||||||||| ||||||||||| ||||||||||||||||||||||  ||||||||||||||||||||||||    
15114446 taaaagg----accaaccatgtactcattcatgtaatctttttcaatacaattcactatgaattctaagggttttccctat 15114522  T

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Target: chr4; HSP #5
Raw Score: 117; E-Value: 9e-60
Query Start/End: Original strand, 38 - 219
Target Start/End: Original strand, 16003450 - 16003626
Alignment:
38 tgttgagataactagaattagttaaggtagttagagttggttaaatgttagttagagagaactatagttagttacaagtagttaaggtcattgaggtcta 137  Q
    |||||||||||||||| ||||||||||||||||||||||||||||||| ||||||| ||||||||||||||||||||||||||| ||| |||||||||||    
16003450 tgttgagataactagagttagttaaggtagttagagttggttaaatgtgagttagaaagaactatagttagttacaagtagttagggtaattgaggtcta 16003549  T
138 taaaaggaccaaccaaccatatactcattcatataatctttttcaatacaattcataatgaattctaagggttttccctatg 219  Q
    |||||||    |||||||||||||||||||||  ||||||||| ||||||||| ||||||||||||||| ||||| ||||||    
16003550 taaaagg----accaaccatatactcattcat-caatctttttaaatacaatttataatgaattctaagagtttttcctatg 16003626  T

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Target: chr7 (Bit Score: 122; Significance: 1e-62; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 122; E-Value: 1e-62
Query Start/End: Original strand, 38 - 212
Target Start/End: Original strand, 10867934 - 10868104
Alignment:
38 tgttgagataactagaattagttaaggtagttagagttggttaaatgttagttagagagaactatagttagttacaagtagttaaggtcattgaggtcta 137  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||| |  ||||||||||||||||||| |||||| ||| |||||||||||    
10867934 tgttgagataactagaattagttaaggtagttagagttggttaaatgttagttaaaaggaactatagttagttacaactagttagggtaattgaggtcta 10868033  T
138 taaaaggaccaaccaaccatatactcattcatataatctttttcaatacaattcataatgaattctaagggtttt 212  Q
    |||||||    ||||||||| ||||||||||||||||||||||||||||||||||  ||||||||||||||||||    
10868034 taaaagg----accaaccatgtactcattcatataatctttttcaatacaattcaatatgaattctaagggtttt 10868104  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 113; E-Value: 2e-57
Query Start/End: Original strand, 38 - 219
Target Start/End: Original strand, 10866217 - 10866394
Alignment:
38 tgttgagataactagaattagttaaggtagttagagttggttaaatgttagttagagagaactatagttagttacaagtagttaaggtcattgaggtcta 137  Q
    |||| |||||||||||||||||||||||||||||||||||||||||||||||||||  ||||||||||||||||||| |||||| ||| |||||| | ||    
10866217 tgttaagataactagaattagttaaggtagttagagttggttaaatgttagttagaatgaactatagttagttacaactagttagggtaattgagattta 10866316  T
138 taaaaggaccaaccaaccatatactcattcatataatctttttcaatacaattcataatgaattctaagggttttccctatg 219  Q
    |||||||    ||||||||| ||||||||||| |||||||||||||||||||| |  |||||||||||||||||||||||||    
10866317 taaaagg----accaaccatgtactcattcatgtaatctttttcaatacaatttaatatgaattctaagggttttccctatg 10866394  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 79; E-Value: 4e-37
Query Start/End: Original strand, 38 - 219
Target Start/End: Original strand, 20186072 - 20186233
Alignment:
38 tgttgagataactagaattagttaaggtagttagagttggttaaatgttagttagagagaactatagttagttacaagtagttaaggtcattgaggtcta 137  Q
    |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||               |||||    
20186072 tgttgagataactagagttagttaaggtagttagagttggttaaatgttagttagagagaactatagtttgttacaagta---------------gtcta 20186156  T
138 taaaaggaccaaccaaccatatactcattcatataatctttttcaatacaattcataatgaattctaagggttttccctatg 219  Q
    || ||||    | ||||||| ||||||||||| ||||||||||||||||||||||  |||||||||||||||||||||||||    
20186157 tataagg----atcaaccatgtactcattcat-taatctttttcaatacaattcaatatgaattctaagggttttccctatg 20186233  T

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Target: chr3 (Bit Score: 99; Significance: 5e-49; HSPs: 6)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 99; E-Value: 5e-49
Query Start/End: Original strand, 38 - 201
Target Start/End: Original strand, 34142934 - 34143093
Alignment:
38 tgttgagataactagaattagttaaggtagttagagttggttaaatgttagttagagagaactatagttagttacaagtagttaaggtcattgaggtcta 137  Q
    |||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| ||| |||||| ||||    
34142934 tgttgagataactagagttagttaaggtagttagagttggttaaatgttagttagagagagctatagttagttacaagtagttagggtaattgagttcta 34143033  T
138 taaaaggaccaaccaaccatatactcattcatataatctttttcaatacaattcataatgaatt 201  Q
    |||||||    ||||||||| |||||||||||  |||||||||||||  ||||||  |||||||    
34143034 taaaagg----accaaccatgtactcattcatgcaatctttttcaatctaattcaatatgaatt 34143093  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 76; E-Value: 3e-35
Query Start/End: Original strand, 38 - 137
Target Start/End: Complemental strand, 27634320 - 27634221
Alignment:
38 tgttgagataactagaattagttaaggtagttagagttggttaaatgttagttagagagaactatagttagttacaagtagttaaggtcattgaggtcta 137  Q
    |||||||||||||||| ||||||||||| |||||||||| || ||||||||||||||||||||||||||||||||||||||||| ||| |||||||||||    
27634320 tgttgagataactagagttagttaaggtggttagagttgcttgaatgttagttagagagaactatagttagttacaagtagttagggtaattgaggtcta 27634221  T

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Target: chr3; HSP #3
Raw Score: 76; E-Value: 3e-35
Query Start/End: Original strand, 38 - 137
Target Start/End: Complemental strand, 34519137 - 34519038
Alignment:
38 tgttgagataactagaattagttaaggtagttagagttggttaaatgttagttagagagaactatagttagttacaagtagttaaggtcattgaggtcta 137  Q
    |||||||||||||||| ||||||||||| |||||||||| || ||||||||||||||||||||||||||||||||||||||||| ||| |||||||||||    
34519137 tgttgagataactagagttagttaaggtggttagagttgcttgaatgttagttagagagaactatagttagttacaagtagttagggtaattgaggtcta 34519038  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 44 - 213
Target Start/End: Complemental strand, 19844896 - 19844732
Alignment:
44 gataactagaattagttaaggtagttagagttggttaaatgttagttagagagaactatagttagttacaa--gtagttaag-gtcattgaggtctataa 140  Q
    |||||||| | ||||| ||||||||||||||| ||||||||||||||||| | |    |||||||||||||  || |||||| || ||||||||||||||    
19844896 gataactatagttagtaaaggtagttagagttagttaaatgttagttagaaaaa----tagttagttacaaatgtggttaagtgtaattgaggtctataa 19844801  T
141 aaggaccaaccaaccatatactcattcatat-aatctttttcaatacaattcataatgaattctaagggttttc 213  Q
    |||     |||| | || ||||||||  ||| |||||||||||||||||||||  ||  |||||||||||||||    
19844800 aag-----accatctatgtactcattactatcaatctttttcaatacaattcaatattcattctaagggttttc 19844732  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 72 - 152
Target Start/End: Original strand, 8584406 - 8584486
Alignment:
72 agttggttaaatgttagttagagagaactatagttagttacaagtagttaaggtcattgaggtctataaaaggaccaacca 152  Q
    |||||| ||||  ||||||| ||||||||||||||||||||  ||||||| |   ||||||||||||||||||||||||||    
8584406 agttgggtaaaaattagttacagagaactatagttagttacttgtagttaggaaaattgaggtctataaaaggaccaacca 8584486  T

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Target: chr3; HSP #6
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 190 - 219
Target Start/End: Original strand, 8584492 - 8584521
Alignment:
190 tcataatgaattctaagggttttccctatg 219  Q
    ||||||||||||||||||||||||||||||    
8584492 tcataatgaattctaagggttttccctatg 8584521  T

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Target: chr8 (Bit Score: 81; Significance: 3e-38; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 81; E-Value: 3e-38
Query Start/End: Original strand, 65 - 214
Target Start/End: Complemental strand, 30187898 - 30187753
Alignment:
65 tagttagagttggttaaatgttagttagagagaactatagttagttacaagtagttaaggtcattgaggtctataaaaggaccaaccaaccatatactca 164  Q
    |||||| |||||||||||  ||||||| ||||||||||| ||||||||| ||||||||||  ||||||||||||||||||||||| ||    | ||||||    
30187898 tagttatagttggttaaaaattagttacagagaactataattagttacatgtagttaaggaaattgaggtctataaaaggaccaatca----tgtactca 30187803  T
165 ttcatataatctttttcaatacaattcataatgaattctaagggttttcc 214  Q
    ||||| |||| |||||||||||||||||||||||||| ||||||||||||    
30187802 ttcatgtaatttttttcaatacaattcataatgaattttaagggttttcc 30187753  T

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Target: chr8; HSP #2
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 172 - 213
Target Start/End: Original strand, 22692478 - 22692519
Alignment:
172 aatctttttcaatacaattcataatgaattctaagggttttc 213  Q
    |||||||||||||||||||||  |||||||||||||||||||    
22692478 aatctttttcaatacaattcaatatgaattctaagggttttc 22692519  T

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Target: scaffold0275 (Bit Score: 39; Significance: 0.0000000000003; HSPs: 1)
Name: scaffold0275
Description:

Target: scaffold0275; HSP #1
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 37 - 143
Target Start/End: Complemental strand, 4068 - 3962
Alignment:
37 gtgttgagataactagaattagttaa-ggtagttagagttggttaaatgttagttagagagaactatagttagttacaa--gtagttaag-gtcattgag 132  Q
    |||||||||||| |||| |||||||| || ||||||||||||||||||||||||||||    |||||||||||| |||   || |||||| || ||||||    
4068 gtgttgagataattagagttagttaaaggcagttagagttggttaaatgttagttaga----actatagttagtaacacatgtggttaagtgtaattgag 3973  T
133 gtctataaaag 143  Q
    |||||||||||    
3972 gtctataaaag 3962  T

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Target: chr5 (Bit Score: 38; Significance: 0.000000000001; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 43 - 218
Target Start/End: Complemental strand, 33566933 - 33566762
Alignment:
43 agataactagaattagttaaggtagttagagttggttaaatgttagttagagagaactatagttagttacaa--gtagttaag-gtcattgaggtctata 139  Q
    ||||||||| | || || ||| ||||||||||| |||||||||||||||||    ||||||||||||||||   || |||||| || ||| |||||||||    
33566933 agataactatagttggtaaagctagttagagttagttaaatgttagttaga----actatagttagttacacatgtggttaagtgtaatttaggtctata 33566838  T
140 aaaggaccaaccaaccatatactcattcatat--aatctttttcaatacaattcataatgaattctaagggttttccctat 218  Q
    ||||     |||| |||| ||||||||  | |  ||||||||||||| |||||||  ||||||||||| ||||||||||||    
33566837 aaag-----accatccatgtactcattactctttaatctttttcaattcaattcaatatgaattctaatggttttccctat 33566762  T

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Target: chr1 (Bit Score: 36; Significance: 0.00000000002; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 149 - 212
Target Start/End: Complemental strand, 17309854 - 17309792
Alignment:
149 accaaccatatactcattcatataatctttttcaatacaattcataatgaattctaagggtttt 212  Q
    |||| |||| |||||||| || ||||||||||||||||||||||  ||||||||||||||||||    
17309854 accatccatgtactcattaat-taatctttttcaatacaattcaatatgaattctaagggtttt 17309792  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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