View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16676_low_9 (Length: 546)
Name: NF16676_low_9
Description: NF16676
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16676_low_9 |
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Alignment Details
Target: chr4 (Bit Score: 301; Significance: 1e-169; HSPs: 4)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 301; E-Value: 1e-169
Query Start/End: Original strand, 194 - 525
Target Start/End: Complemental strand, 12708652 - 12708320
Alignment:
| Q |
194 |
taagaggtaattatgagggagaagagataccaataatggaagtaaaatcaattcaacgtaaaaagaagtttggcgaagatgaaacaccaaaaatggaaga |
293 |
Q |
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| T |
12708652 |
taagaggtagttatgagggagaagagataccaataatggaagtaaaatcaattcaacgtaaaaagaagtttgacgaagatgaaacaccaaaaatggaaga |
12708553 |
T |
|
| Q |
294 |
aaaactttcagcagctgatcaaaatcttagaaagatttaaagaaggttcactcgatcggcccattacgcatttcagtccctaaatcgatttccctcgtga |
393 |
Q |
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| T |
12708552 |
aaaactttcagcagctgatcaaaatcttagaaagatttaaagaaggttcactcgattggcccattacgcatttcagtccctaaatcgatttccctcgtga |
12708453 |
T |
|
| Q |
394 |
ttaatgaactagaaaaccccctagaagaaagcttcttatgtcccttggaattttgagcatctcaaattccttgaaagatttaaaccattgcacaaccaac |
493 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |
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| T |
12708452 |
ttaatgaactagaaaaccccctagaagaaagcttcttatgtcccttggaattttgagcatctcaaattccttgaaagattcaaaccattgcacaaccaac |
12708353 |
T |
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| Q |
494 |
aattg-cctttatatctagatccaaattctcac |
525 |
Q |
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| T |
12708352 |
aattgtcctgtagatctagatccaaattctcac |
12708320 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 96; E-Value: 8e-47
Query Start/End: Original strand, 98 - 197
Target Start/End: Complemental strand, 12709141 - 12709042
Alignment:
| Q |
98 |
ctttccatgaagaggtaagtgaagaggaaaatcctagtgaaattggggaagattctaatgaagtgaaaaccgaagaagaggaccccattctgaccttaag |
197 |
Q |
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| T |
12709141 |
ctttccatgaagaggtaagtgaagaggaaaatcctagtgaaattggggaggattctaatgaagtgaaaaccgaagaagaggaccccattctgaccttaag |
12709042 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 445 - 523
Target Start/End: Complemental strand, 17274818 - 17274738
Alignment:
| Q |
445 |
tttgagcatctcaaattccttgaaagatttaaaccattgcacaaccaacaattg--cctttatatctagatccaaattctc |
523 |
Q |
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| T |
17274818 |
tttgagcacctcaaattccttgaaagattcaaaccattacacaacctacaattgtctctctagatctagatccaaattctc |
17274738 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 1 - 39
Target Start/End: Complemental strand, 12709238 - 12709200
Alignment:
| Q |
1 |
agatacctaggaaggaaggcaagaatgagaagcaaatgc |
39 |
Q |
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| T |
12709238 |
agatacctaggaaggaaggcaagaatgagaagcaaatgc |
12709200 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 49; Significance: 9e-19; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 49; E-Value: 9e-19
Query Start/End: Original strand, 418 - 498
Target Start/End: Original strand, 16242073 - 16242153
Alignment:
| Q |
418 |
aagaaagcttcttatgtcccttggaattttgagcatctcaaattccttgaaagatttaaaccattgcacaaccaacaattg |
498 |
Q |
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| T |
16242073 |
aagaaagcttcttatgtcctttagaactttgagaacctcaaattccttaaaagattcaaaccattgaacaaccaacaattg |
16242153 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 33; Significance: 0.000000003; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 418 - 490
Target Start/End: Original strand, 36537647 - 36537719
Alignment:
| Q |
418 |
aagaaagcttcttatgtcccttggaattttgagcatctcaaattccttgaaagatttaaaccattgcacaacc |
490 |
Q |
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| T |
36537647 |
aagaaagcttcttatgtcatttgaaactttaagcacctcaaattgcttaaaagattcaaaccattacacaacc |
36537719 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 418 - 473
Target Start/End: Complemental strand, 23156926 - 23156871
Alignment:
| Q |
418 |
aagaaagcttcttatgtcccttggaattttgagcatctcaaattccttgaaagatt |
473 |
Q |
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| T |
23156926 |
aagaaagcttcttgtgtcctttgtaactttgagaaactcaaattccttgaaagatt |
23156871 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 445 - 525
Target Start/End: Complemental strand, 20475980 - 20475898
Alignment:
| Q |
445 |
tttgagcatctcaaattccttgaaagatttaaaccattgcacaaccaacaattgcctttata--tctagatccaaattctcac |
525 |
Q |
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|||||||| |||||||||||| |||| || |||||||| ||||| | ||||||| || | || ||||||||||||||||||| |
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| T |
20475980 |
tttgagcacctcaaattccttaaaagtttcaaaccattacacaatctacaattgtctctctaattctagatccaaattctcac |
20475898 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 29; Significance: 0.0000008; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 418 - 490
Target Start/End: Complemental strand, 12125662 - 12125590
Alignment:
| Q |
418 |
aagaaagcttcttatgtcccttggaattttgagcatctcaaattccttgaaagatttaaaccattgcacaacc |
490 |
Q |
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||||||||||||| | || |||||| ||| |||| |||||||| ||||||||| | |||||||| ||||||| |
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| T |
12125662 |
aagaaagcttcttgtatcatttggaactttaagcacctcaaatttcttgaaagaatcaaaccattacacaacc |
12125590 |
T |
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